Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Trav16d-dv11A0A075B617 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
Trav16d-dv11A0A075B617 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trav16d-dv11A0A075B617 Gm25239-201ENSMUST00000174915 86 ntBASIC23.75■■□□□ 1.39
Trav16d-dv11A0A075B617 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Trav16d-dv11A0A075B617 Psd-208ENSMUST00000224556 2034 ntBASIC23.71■■□□□ 1.39
Trav16d-dv11A0A075B617 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Trav16d-dv11A0A075B617 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trav16d-dv11A0A075B617 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trav16d-dv11A0A075B617 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Trav16d-dv11A0A075B617 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Trav16d-dv11A0A075B617 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trav16d-dv11A0A075B617 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trav16d-dv11A0A075B617 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trav16d-dv11A0A075B617 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trav16d-dv11A0A075B617 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trav16d-dv11A0A075B617 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Trav16d-dv11A0A075B617 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22.06■■□□□ 1.12
Trav16d-dv11A0A075B617 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
Trav16d-dv11A0A075B617 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trav16d-dv11A0A075B617 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trav16d-dv11A0A075B617 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trav16d-dv11A0A075B617 Gm15042-201ENSMUST00000120212 883 ntBASIC21.68■■□□□ 1.06
Trav16d-dv11A0A075B617 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trav16d-dv11A0A075B617 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.56■■□□□ 1.04
Trav16d-dv11A0A075B617 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Trav16d-dv11A0A075B617 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav16d-dv11A0A075B617 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Trav16d-dv11A0A075B617 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trav16d-dv11A0A075B617 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trav16d-dv11A0A075B617 Gm42596-201ENSMUST00000196305 1958 ntBASIC21.37■■□□□ 1.01
Trav16d-dv11A0A075B617 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.35■■□□□ 1.01
Trav16d-dv11A0A075B617 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trav16d-dv11A0A075B617 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
Trav16d-dv11A0A075B617 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21.32■■□□□ 1
Trav16d-dv11A0A075B617 Gm10524-201ENSMUST00000181931 1893 ntBASIC21.31■■□□□ 1
Trav16d-dv11A0A075B617 Gm15045-201ENSMUST00000117359 883 ntBASIC21.3■■□□□ 1
Trav16d-dv11A0A075B617 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Trav16d-dv11A0A075B617 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.29■■□□□ 1
Trav16d-dv11A0A075B617 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Trav16d-dv11A0A075B617 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav16d-dv11A0A075B617 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav16d-dv11A0A075B617 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav16d-dv11A0A075B617 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav16d-dv11A0A075B617 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav16d-dv11A0A075B617 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trav16d-dv11A0A075B617 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Trav16d-dv11A0A075B617 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Trav16d-dv11A0A075B617 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
Trav16d-dv11A0A075B617 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trav16d-dv11A0A075B617 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav16d-dv11A0A075B617 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20.99■□□□□ 0.95
Trav16d-dv11A0A075B617 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav16d-dv11A0A075B617 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trav16d-dv11A0A075B617 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav16d-dv11A0A075B617 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trav16d-dv11A0A075B617 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trav16d-dv11A0A075B617 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trav16d-dv11A0A075B617 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trav16d-dv11A0A075B617 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trav16d-dv11A0A075B617 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Trav16d-dv11A0A075B617 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trav16d-dv11A0A075B617 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trav16d-dv11A0A075B617 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trav16d-dv11A0A075B617 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Trav16d-dv11A0A075B617 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20.55■□□□□ 0.88
Trav16d-dv11A0A075B617 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav16d-dv11A0A075B617 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Trav16d-dv11A0A075B617 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trav16d-dv11A0A075B617 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trav16d-dv11A0A075B617 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trav16d-dv11A0A075B617 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trav16d-dv11A0A075B617 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trav16d-dv11A0A075B617 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trav16d-dv11A0A075B617 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Trav16d-dv11A0A075B617 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Trav16d-dv11A0A075B617 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav16d-dv11A0A075B617 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav16d-dv11A0A075B617 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20.26■□□□□ 0.83
Trav16d-dv11A0A075B617 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav16d-dv11A0A075B617 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav16d-dv11A0A075B617 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav16d-dv11A0A075B617 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav16d-dv11A0A075B617 Gm24109-201ENSMUST00000175489 103 ntBASIC20.14■□□□□ 0.81
Trav16d-dv11A0A075B617 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav16d-dv11A0A075B617 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav16d-dv11A0A075B617 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav16d-dv11A0A075B617 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav16d-dv11A0A075B617 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav16d-dv11A0A075B617 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trav16d-dv11A0A075B617 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trav16d-dv11A0A075B617 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Trav16d-dv11A0A075B617 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav16d-dv11A0A075B617 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav16d-dv11A0A075B617 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav16d-dv11A0A075B617 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC20■□□□□ 0.79
Trav16d-dv11A0A075B617 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trav16d-dv11A0A075B617 Gm23366-201ENSMUST00000175022 89 ntBASIC19.99■□□□□ 0.79
Trav16d-dv11A0A075B617 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC19.97■□□□□ 0.79
Trav16d-dv11A0A075B617 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 13.4 ms