Protein–RNA interactions for Protein: P01849

Tcra, T-cell receptor alpha chain C region, mousemouse

Predictions only

Length 138 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TcraP01849 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TcraP01849 Gm25239-201ENSMUST00000174915 86 ntBASIC24.09■■□□□ 1.45
TcraP01849 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
TcraP01849 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TcraP01849 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
TcraP01849 Psd-208ENSMUST00000224556 2034 ntBASIC23.28■■□□□ 1.32
TcraP01849 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TcraP01849 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TcraP01849 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
TcraP01849 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TcraP01849 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TcraP01849 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TcraP01849 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TcraP01849 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
TcraP01849 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TcraP01849 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TcraP01849 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TcraP01849 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TcraP01849 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
TcraP01849 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TcraP01849 Gm15042-201ENSMUST00000120212 883 ntBASIC21.52■■□□□ 1.04
TcraP01849 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC21.46■■□□□ 1.03
TcraP01849 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TcraP01849 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
TcraP01849 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TcraP01849 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TcraP01849 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TcraP01849 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
TcraP01849 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
TcraP01849 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.11■□□□□ 0.97
TcraP01849 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.11■□□□□ 0.97
TcraP01849 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
TcraP01849 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TcraP01849 Gm42596-201ENSMUST00000196305 1958 ntBASIC21.05■□□□□ 0.96
TcraP01849 Gm15045-201ENSMUST00000117359 883 ntBASIC21.03■□□□□ 0.96
TcraP01849 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TcraP01849 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TcraP01849 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TcraP01849 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TcraP01849 Gm10524-201ENSMUST00000181931 1893 ntBASIC20.8■□□□□ 0.92
TcraP01849 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TcraP01849 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TcraP01849 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TcraP01849 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TcraP01849 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TcraP01849 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20.73■□□□□ 0.91
TcraP01849 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TcraP01849 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
TcraP01849 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC20.66■□□□□ 0.9
TcraP01849 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
TcraP01849 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TcraP01849 Gm24109-201ENSMUST00000175489 103 ntBASIC20.63■□□□□ 0.89
TcraP01849 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TcraP01849 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
TcraP01849 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TcraP01849 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TcraP01849 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TcraP01849 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20.37■□□□□ 0.85
TcraP01849 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TcraP01849 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TcraP01849 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
TcraP01849 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
TcraP01849 Gm23366-201ENSMUST00000175022 89 ntBASIC20.24■□□□□ 0.83
TcraP01849 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TcraP01849 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
TcraP01849 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TcraP01849 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TcraP01849 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TcraP01849 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TcraP01849 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TcraP01849 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TcraP01849 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TcraP01849 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
TcraP01849 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TcraP01849 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TcraP01849 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TcraP01849 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TcraP01849 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20.04■□□□□ 0.8
TcraP01849 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TcraP01849 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TcraP01849 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TcraP01849 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
TcraP01849 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20■□□□□ 0.79
TcraP01849 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TcraP01849 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
TcraP01849 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC19.9■□□□□ 0.78
TcraP01849 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TcraP01849 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC19.9■□□□□ 0.78
TcraP01849 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TcraP01849 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TcraP01849 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TcraP01849 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TcraP01849 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TcraP01849 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TcraP01849 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC19.78■□□□□ 0.76
TcraP01849 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
TcraP01849 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TcraP01849 AC153911.1-202ENSMUST00000218534 1034 ntBASIC19.74■□□□□ 0.75
TcraP01849 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TcraP01849 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 8.1 ms