RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 C4orf26Q17RF5 130 aa6.47□□□□□ -1.37
LINC00339-211ENST00000641009 SMIM20Q8N5G0 67 aa6.42□□□□□ -1.38
LINC00339-211ENST00000641009 TRAV7A0A075B6U4 112 aa6.4□□□□□ -1.39
LINC00339-211ENST00000641009 KRTAP3-1Q9BYR8 98 aa6.38□□□□□ -1.39
LINC00339-211ENST00000641009 TMEM258P61165 79 aa6.35□□□□□ -1.39
LINC00339-211ENST00000641009 RPS28P62857 69 aaKnown RBP6.35□□□□□ -1.39
LINC00339-211ENST00000641009 CYSTM1Q9H1C7 97 aa6.35□□□□□ -1.39
LINC00339-211ENST00000641009 S4R3F8 94 aa6.34□□□□□ -1.39
LINC00339-211ENST00000641009 KRTAP6-3Q3LI67 103 aa6.34□□□□□ -1.4
LINC00339-211ENST00000641009 C1orf64Q8NEQ6 169 aa6.33□□□□□ -1.4
LINC00339-211ENST00000641009 KLKP1Q107X0 134 aa6.32□□□□□ -1.4
LINC00339-211ENST00000641009 LCA10Q71F78 164 aa6.31□□□□□ -1.4
LINC00339-211ENST00000641009 CSAG1Q6PB30 78 aa6.29□□□□□ -1.4
LINC00339-211ENST00000641009 MT1BP07438 61 aa6.28□□□□□ -1.4
LINC00339-211ENST00000641009 C20orf197Q8N268 126 aa6.28□□□□□ -1.4
LINC00339-211ENST00000641009 OCR1Q9BZK8 76 aa6.28□□□□□ -1.4
LINC00339-211ENST00000641009 H7BZZ5 65 aa6.27□□□□□ -1.41
LINC00339-211ENST00000641009 TP53AIP1Q9HCN2 124 aa6.26□□□□□ -1.41
LINC00339-211ENST00000641009 A6NN06 94 aa6.25□□□□□ -1.41
LINC00339-211ENST00000641009 NDUFC1O43677 76 aa6.25□□□□□ -1.41
LINC00339-211ENST00000641009 Q5VV11 94 aa6.25□□□□□ -1.41
LINC00339-211ENST00000641009 SPRR2GQ9BYE4 73 aa6.25□□□□□ -1.41
LINC00339-211ENST00000641009 V9GYY9 64 aa6.24□□□□□ -1.41
LINC00339-211ENST00000641009 KRTAP19-8Q3LI54 63 aa6.23□□□□□ -1.41
LINC00339-211ENST00000641009 H3BS24 57 aa6.22□□□□□ -1.41
LINC00339-211ENST00000641009 KRTAP3-3Q9BYR6 98 aa6.21□□□□□ -1.42
LINC00339-211ENST00000641009 CYP4F30PQ9H0H9 118 aa6.19□□□□□ -1.42
LINC00339-211ENST00000641009 SNURFQ9Y675 71 aa6.19□□□□□ -1.42
LINC00339-211ENST00000641009 ATP5EP56381 51 aaPredicted RBP6.18□□□□□ -1.42
LINC00339-211ENST00000641009 A0A0A0MQY5 61 aa6.17□□□□□ -1.42
LINC00339-211ENST00000641009 SERP1Q9Y6X1 66 aa6.16□□□□□ -1.42
LINC00339-211ENST00000641009 KRTAP10-5P60370 271 aa6.15□□□□□ -1.42
LINC00339-211ENST00000641009 MUC12Q9UKN1 5478 aa6.15□□□□□ -1.42
LINC00339-211ENST00000641009 TRAV22A0A0B4J277 110 aa6.14□□□□□ -1.43
LINC00339-211ENST00000641009 NEBP20929 6669 aa6.13□□□□□ -1.43
LINC00339-211ENST00000641009 LOC101927531A0A1B0GV80 90 aa6.1□□□□□ -1.43
LINC00339-211ENST00000641009 H3BPC8 53 aa6.07□□□□□ -1.44
LINC00339-211ENST00000641009 CRIPTQ9P021 101 aa6.07□□□□□ -1.44
LINC00339-211ENST00000641009 SMIM26A0A096LP01 95 aa6.05□□□□□ -1.44
LINC00339-211ENST00000641009 H0Y9P7 68 aa6.03□□□□□ -1.44
LINC00339-211ENST00000641009 MP68P56378 58 aa6.02□□□□□ -1.44
LINC00339-211ENST00000641009 KRTAP5-9P26371 169 aa6□□□□□ -1.45
LINC00339-211ENST00000641009 H0YAA0 97 aa5.99□□□□□ -1.45
LINC00339-211ENST00000641009 KMT2DO14686 5537 aa5.98□□□□□ -1.45
LINC00339-211ENST00000641009 SPANXA2-OT1Q8N9U9 137 aa5.98□□□□□ -1.45
LINC00339-211ENST00000641009 LINC00208Q96KT6 92 aa5.96□□□□□ -1.45
LINC00339-211ENST00000641009 ADM2Q7Z4H4 148 aa5.96□□□□□ -1.46
LINC00339-211ENST00000641009 MDN1Q9NU22 5596 aa5.95□□□□□ -1.46
LINC00339-211ENST00000641009 KRTAP20-1Q3LI63 56 aa5.94□□□□□ -1.46
LINC00339-211ENST00000641009 A8MUN3 132 aa5.93□□□□□ -1.46
LINC00339-211ENST00000641009 KRTAP3-2Q9BYR7 98 aa5.93□□□□□ -1.46
LINC00339-211ENST00000641009 PRO0628Q9UI54 55 aa5.9□□□□□ -1.47
LINC00339-211ENST00000641009 Q1T7F1 81 aa5.88□□□□□ -1.47
LINC00339-211ENST00000641009 MT1XP80297 61 aa5.86□□□□□ -1.47
LINC00339-211ENST00000641009 PRO2289Q9P1D8 64 aa5.85□□□□□ -1.47
LINC00339-211ENST00000641009 PLAC4Q8WY50 150 aa5.83□□□□□ -1.48
LINC00339-211ENST00000641009 P0C880 135 aa5.82□□□□□ -1.48
LINC00339-211ENST00000641009 SPRR2FQ96RM1 72 aa5.82□□□□□ -1.48
LINC00339-211ENST00000641009 R4GN34 69 aa5.81□□□□□ -1.48
LINC00339-211ENST00000641009 M0QZ58 72 aa5.76□□□□□ -1.49
LINC00339-211ENST00000641009 SPRR2EP22531 72 aa5.76□□□□□ -1.49
LINC00339-211ENST00000641009 SPRR2BP35325 72 aa5.76□□□□□ -1.49
LINC00339-211ENST00000641009 SPRR2AP35326 72 aa5.76□□□□□ -1.49
LINC00339-211ENST00000641009 COA5Q86WW8 74 aa5.76□□□□□ -1.49
LINC00339-211ENST00000641009 DMAC1Q96GE9 116 aa5.75□□□□□ -1.49
LINC00339-211ENST00000641009 KRTAP2-3P0C7H8 128 aa5.74□□□□□ -1.49
LINC00339-211ENST00000641009 KRTAP8-1Q8IUC2 63 aa5.74□□□□□ -1.49
LINC00339-211ENST00000641009 KRTAP2-4Q9BYR9 128 aa5.74□□□□□ -1.49
LINC00339-211ENST00000641009 KRTAP12-2P59991 146 aa5.71□□□□□ -1.49
LINC00339-211ENST00000641009 LINC01554Q52M75 96 aa5.71□□□□□ -1.5
LINC00339-211ENST00000641009 LINC01558Q9Y6Z2 57 aa5.68□□□□□ -1.5
LINC00339-211ENST00000641009 KRTAP4-8A0A0G2JLE6 195 aa5.66□□□□□ -1.5
LINC00339-211ENST00000641009 PSPHP1O15172 72 aa5.66□□□□□ -1.5
LINC00339-211ENST00000641009 LCE1AQ5T7P2 110 aa5.66□□□□□ -1.5
LINC00339-211ENST00000641009 BRK1Q8WUW1 75 aa5.66□□□□□ -1.5
LINC00339-211ENST00000641009 KRTAP4-8Q9BYQ9 185 aa5.66□□□□□ -1.5
LINC00339-211ENST00000641009 ACYP2P14621 99 aa5.65□□□□□ -1.5
LINC00339-211ENST00000641009 PMAIP1Q13794 54 aa5.65□□□□□ -1.5
LINC00339-211ENST00000641009 KRTAP10-7P60409 375 aaPredicted RBP5.6□□□□□ -1.51
LINC00339-211ENST00000641009 PRR15LQ9BU68 103 aa5.6□□□□□ -1.51
LINC00339-211ENST00000641009 CHKB-CPT1BH3BT56 60 aa5.57□□□□□ -1.52
LINC00339-211ENST00000641009 SPRR2DP22532 72 aa5.56□□□□□ -1.52
LINC00339-211ENST00000641009 KRTAP10-12P60413 245 aa5.55□□□□□ -1.52
LINC00339-211ENST00000641009 KRTAP2-2Q9BYT5 123 aa5.55□□□□□ -1.52
LINC00339-211ENST00000641009 KRTAP2-1Q9BYU5 128 aa5.55□□□□□ -1.52
LINC00339-211ENST00000641009 SPTSSBQ8NFR3 76 aa5.51□□□□□ -1.53
LINC00339-211ENST00000641009 CDC42SE1Q9NRR8 79 aa5.51□□□□□ -1.53
LINC00339-211ENST00000641009 A6NED7 52 aa5.49□□□□□ -1.53
LINC00339-211ENST00000641009 A8MU10 97 aa5.47□□□□□ -1.53
LINC00339-211ENST00000641009 LCE3BQ5TA77 95 aa5.42□□□□□ -1.54
LINC00339-211ENST00000641009 A0A1B0GU69 56 aa5.41□□□□□ -1.54
LINC00339-211ENST00000641009 KRTAP23-1A1A580 65 aa5.39□□□□□ -1.55
LINC00339-211ENST00000641009 KRTAP13-4Q3LI77 160 aa5.39□□□□□ -1.55
LINC00339-211ENST00000641009 SPATA8Q6RVD6 105 aa5.39□□□□□ -1.55
LINC00339-211ENST00000641009 UQCR11O14957 56 aa5.33□□□□□ -1.56
LINC00339-211ENST00000641009 CAMK2N1Q7Z7J9 78 aa5.32□□□□□ -1.56
LINC00339-211ENST00000641009 MIR22HGQ0VDD5 57 aa5.29□□□□□ -1.56
LINC00339-211ENST00000641009 KTN1-AS1Q86SY8 53 aa5.28□□□□□ -1.56
LINC00339-211ENST00000641009 DSTQ03001 7570 aaKnown RBP5.28□□□□□ -1.56
LINC00339-211ENST00000641009 KRTAP19-7Q3SYF9 63 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms