RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 LCA10Q71F78 164 aa9.37□□□□□ -0.91
CLN3-258ENST00000637184 LCE2CQ5TA81 110 aa9.35□□□□□ -0.91
CLN3-258ENST00000637184 RPS28P62857 69 aaKnown RBP9.33□□□□□ -0.92
CLN3-258ENST00000637184 FLGP20930 4061 aaPredicted RBP9.32□□□□□ -0.92
CLN3-258ENST00000637184 SPTSSBQ8NFR3 76 aa9.29□□□□□ -0.92
CLN3-258ENST00000637184 KRTAP3-3Q9BYR6 98 aa9.29□□□□□ -0.92
CLN3-258ENST00000637184 FAT4Q6V0I7 4981 aa9.29□□□□□ -0.92
CLN3-258ENST00000637184 CSAG1Q6PB30 78 aa9.23□□□□□ -0.93
CLN3-258ENST00000637184 MT1HP80294 61 aa9.19□□□□□ -0.94
CLN3-258ENST00000637184 SMIM26A0A096LP01 95 aa9.17□□□□□ -0.94
CLN3-258ENST00000637184 M0R2T5 61 aa9.14□□□□□ -0.95
CLN3-258ENST00000637184 Q1T7F1 81 aa9.04□□□□□ -0.96
CLN3-258ENST00000637184 LINC01558Q9Y6Z2 57 aa9.04□□□□□ -0.96
CLN3-258ENST00000637184 V9GYY9 64 aa9.04□□□□□ -0.96
CLN3-258ENST00000637184 SEC61GP60059 68 aa9.01□□□□□ -0.97
CLN3-258ENST00000637184 A0A1B0GU69 56 aa8.99□□□□□ -0.97
CLN3-258ENST00000637184 H0YAA0 97 aa8.99□□□□□ -0.97
CLN3-258ENST00000637184 ADM2Q7Z4H4 148 aa8.96□□□□□ -0.97
CLN3-258ENST00000637184 LCE2AQ5TA79 106 aaPredicted RBP8.96□□□□□ -0.98
CLN3-258ENST00000637184 PRR15LQ9BU68 103 aa8.95□□□□□ -0.98
CLN3-258ENST00000637184 KRTAP3-2Q9BYR7 98 aa8.91□□□□□ -0.98
CLN3-258ENST00000637184 PSPHP1O15172 72 aa8.91□□□□□ -0.98
CLN3-258ENST00000637184 KRTAP10-6P60371 365 aaPredicted RBP8.89□□□□□ -0.99
CLN3-258ENST00000637184 P0C880 135 aa8.86□□□□□ -0.99
CLN3-258ENST00000637184 LORP23490 312 aaPredicted RBP8.84□□□□□ -1
CLN3-258ENST00000637184 KRTAP9-8Q9BYQ0 159 aa8.82□□□□□ -1
CLN3-258ENST00000637184 Q5VV11 94 aa8.81□□□□□ -1
CLN3-258ENST00000637184 MT2AP02795 61 aa8.78□□□□□ -1
CLN3-258ENST00000637184 A0A1B0GU33 70 aa8.77□□□□□ -1.01
CLN3-258ENST00000637184 KRTAP10-10P60014 251 aa8.73□□□□□ -1.01
CLN3-258ENST00000637184 MT1FP04733 61 aa8.72□□□□□ -1.01
CLN3-258ENST00000637184 SVIPQ8NHG7 77 aa8.72□□□□□ -1.01
CLN3-258ENST00000637184 UQCR11O14957 56 aa8.68□□□□□ -1.02
CLN3-258ENST00000637184 CRIPTQ9P021 101 aa8.68□□□□□ -1.02
CLN3-258ENST00000637184 R4GN34 69 aa8.68□□□□□ -1.02
CLN3-258ENST00000637184 M0QZ58 72 aa8.65□□□□□ -1.02
CLN3-258ENST00000637184 A6NED7 52 aa8.64□□□□□ -1.03
CLN3-258ENST00000637184 SPATA8Q6RVD6 105 aa8.63□□□□□ -1.03
CLN3-258ENST00000637184 KRTAP13-4Q3LI77 160 aa8.62□□□□□ -1.03
CLN3-258ENST00000637184 MIR22HGQ0VDD5 57 aa8.56□□□□□ -1.04
CLN3-258ENST00000637184 SPRR2GQ9BYE4 73 aa8.52□□□□□ -1.05
CLN3-258ENST00000637184 KRTAP19-1Q8IUB9 90 aa8.5□□□□□ -1.05
CLN3-258ENST00000637184 KRTAP9-3Q9BYQ3 159 aa8.5□□□□□ -1.05
CLN3-258ENST00000637184 LINC01554Q52M75 96 aa8.5□□□□□ -1.05
CLN3-258ENST00000637184 A0A0D9SG42 100 aa8.47□□□□□ -1.05
CLN3-258ENST00000637184 A8MU10 97 aa8.47□□□□□ -1.05
CLN3-258ENST00000637184 CDC42SE1Q9NRR8 79 aa8.45□□□□□ -1.06
CLN3-258ENST00000637184 BRK1Q8WUW1 75 aa8.44□□□□□ -1.06
CLN3-258ENST00000637184 PRO0628Q9UI54 55 aa8.35□□□□□ -1.07
CLN3-258ENST00000637184 A6NN06 94 aa8.33□□□□□ -1.08
CLN3-258ENST00000637184 KRTAP19-8Q3LI54 63 aa8.32□□□□□ -1.08
CLN3-258ENST00000637184 LCE2BO14633 110 aa8.3□□□□□ -1.08
CLN3-258ENST00000637184 SPINT4Q6UDR6 99 aa8.3□□□□□ -1.08
CLN3-258ENST00000637184 KRTAP12-1P59990 96 aa8.3□□□□□ -1.08
CLN3-258ENST00000637184 KRTAP12-2P59991 146 aa8.26□□□□□ -1.09
CLN3-258ENST00000637184 K7ERS5 55 aa8.24□□□□□ -1.09
CLN3-258ENST00000637184 PLAC4Q8WY50 150 aa8.23□□□□□ -1.09
CLN3-258ENST00000637184 MT1BP07438 61 aa8.22□□□□□ -1.09
CLN3-258ENST00000637184 LCE2DQ5TA82 110 aaPredicted RBP8.22□□□□□ -1.09
CLN3-258ENST00000637184 USH2AO75445 5202 aa8.15□□□□□ -1.1
CLN3-258ENST00000637184 CAMK2N1Q7Z7J9 78 aa8.12□□□□□ -1.11
CLN3-258ENST00000637184 KRTAP9-2Q9BYQ4 174 aa7.99□□□□□ -1.13
CLN3-258ENST00000637184 FSIP2Q5CZC0 6907 aa7.97□□□□□ -1.13
CLN3-258ENST00000637184 PMAIP1Q13794 54 aa7.96□□□□□ -1.14
CLN3-258ENST00000637184 SSPOA2VEC9 5147 aa7.91□□□□□ -1.14
CLN3-258ENST00000637184 MT1XP80297 61 aa7.91□□□□□ -1.14
CLN3-258ENST00000637184 PRO2289Q9P1D8 64 aa7.9□□□□□ -1.14
CLN3-258ENST00000637184 KRTAP10-5P60370 271 aa7.89□□□□□ -1.15
CLN3-258ENST00000637184 KRTAP19-6Q3LI70 58 aa7.85□□□□□ -1.15
CLN3-258ENST00000637184 C10orf95Q9H7T3 257 aa7.85□□□□□ -1.15
CLN3-258ENST00000637184 ROMO1P60602 79 aa7.84□□□□□ -1.15
CLN3-258ENST00000637184 CRCT1Q9UGL9 99 aa7.69□□□□□ -1.18
CLN3-258ENST00000637184 TNP1P09430 55 aa7.68□□□□□ -1.18
CLN3-258ENST00000637184 KTN1-AS1Q86SY8 53 aa7.68□□□□□ -1.18
CLN3-258ENST00000637184 KRTAP25-1Q3LHN0 102 aa7.64□□□□□ -1.19
CLN3-258ENST00000637184 FCGBPQ9Y6R7 5405 aaPredicted RBP7.62□□□□□ -1.19
CLN3-258ENST00000637184 KRTAP10-7P60409 375 aaPredicted RBP7.59□□□□□ -1.2
CLN3-258ENST00000637184 KRTAP10-12P60413 245 aa7.51□□□□□ -1.21
CLN3-258ENST00000637184 PRAC1Q96KF2 57 aa7.49□□□□□ -1.21
CLN3-258ENST00000637184 KRTAP9-6A0A140TA67 174 aa7.48□□□□□ -1.21
CLN3-258ENST00000637184 KRTAP23-1A1A580 65 aa7.37□□□□□ -1.23
CLN3-258ENST00000637184 LCE3AQ5TA76 89 aa7.36□□□□□ -1.23
CLN3-258ENST00000637184 KMT2DO14686 5537 aa7.35□□□□□ -1.23
CLN3-258ENST00000637184 KRTAP4-8A0A0G2JLE6 195 aa7.34□□□□□ -1.23
CLN3-258ENST00000637184 KRTAP4-8Q9BYQ9 185 aa7.34□□□□□ -1.23
CLN3-258ENST00000637184 PP632Q6XCG6 107 aa7.33□□□□□ -1.24
CLN3-258ENST00000637184 MACF1Q9UPN3 7388 aaKnown RBP7.27□□□□□ -1.25
CLN3-258ENST00000637184 KRTAP8-1Q8IUC2 63 aa7.2□□□□□ -1.26
CLN3-258ENST00000637184 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.12□□□□□ -1.27
CLN3-258ENST00000637184 KRTAP19-5Q3LI72 72 aa7.11□□□□□ -1.27
CLN3-258ENST00000637184 SYNE2Q8WXH0 6885 aaKnown RBP7.1□□□□□ -1.27
CLN3-258ENST00000637184 KRTAP12-3P60328 96 aa7.08□□□□□ -1.28
CLN3-258ENST00000637184 KRTAP19-7Q3SYF9 63 aa7.06□□□□□ -1.28
CLN3-258ENST00000637184 SPRR2FQ96RM1 72 aa6.97□□□□□ -1.29
CLN3-258ENST00000637184 MT1EP04732 61 aa6.95□□□□□ -1.3
CLN3-258ENST00000637184 KRTAP5-9P26371 169 aa6.93□□□□□ -1.3
CLN3-258ENST00000637184 KRTAP6-3Q3LI67 103 aa6.9□□□□□ -1.3
CLN3-258ENST00000637184 KRTAP15-1Q3LI76 137 aa6.9□□□□□ -1.31
CLN3-258ENST00000637184 MUC12Q9UKN1 5478 aa6.88□□□□□ -1.31
CLN3-258ENST00000637184 KRTAP9-7A8MTY7 169 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms