RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 SEC61BP60468 96 aaKnown RBP9.11□□□□□ -0.95
CLN3-256ENST00000637107 RPL37P61927 97 aaKnown RBP9.11□□□□□ -0.95
CLN3-256ENST00000637107 SEC61GP60059 68 aa9.1□□□□□ -0.95
CLN3-256ENST00000637107 SPINK7P58062 85 aa9.09□□□□□ -0.95
CLN3-256ENST00000637107 KRTAP4-1Q9BYQ7 146 aa9.05□□□□□ -0.96
CLN3-256ENST00000637107 A6NED7 52 aa9.03□□□□□ -0.96
CLN3-256ENST00000637107 A8MU10 97 aa9.01□□□□□ -0.97
CLN3-256ENST00000637107 ATP11AUNQ6ZP68 121 aa9.01□□□□□ -0.97
CLN3-256ENST00000637107 KRTAP3-1Q9BYR8 98 aa9□□□□□ -0.97
CLN3-256ENST00000637107 LCA10Q71F78 164 aa8.98□□□□□ -0.97
CLN3-256ENST00000637107 A0A1B0GU69 56 aa8.97□□□□□ -0.97
CLN3-256ENST00000637107 CDC42SE1Q9NRR8 79 aa8.93□□□□□ -0.98
CLN3-256ENST00000637107 COX6B2Q6YFQ2 88 aa8.92□□□□□ -0.98
CLN3-256ENST00000637107 SPTSSBQ8NFR3 76 aa8.9□□□□□ -0.98
CLN3-256ENST00000637107 FAT4Q6V0I7 4981 aa8.88□□□□□ -0.99
CLN3-256ENST00000637107 UQCR11O14957 56 aa8.76□□□□□ -1.01
CLN3-256ENST00000637107 KRTAP19-2Q3LHN2 52 aa8.76□□□□□ -1.01
CLN3-256ENST00000637107 PMAIP1Q13794 54 aa8.75□□□□□ -1.01
CLN3-256ENST00000637107 SPATA8Q6RVD6 105 aa8.75□□□□□ -1.01
CLN3-256ENST00000637107 MIR22HGQ0VDD5 57 aa8.72□□□□□ -1.01
CLN3-256ENST00000637107 LCE2CQ5TA81 110 aa8.71□□□□□ -1.02
CLN3-256ENST00000637107 A6NN06 94 aa8.66□□□□□ -1.02
CLN3-256ENST00000637107 KRTAP3-3Q9BYR6 98 aa8.64□□□□□ -1.03
CLN3-256ENST00000637107 LCE2AQ5TA79 106 aaPredicted RBP8.63□□□□□ -1.03
CLN3-256ENST00000637107 S4R3F8 94 aa8.61□□□□□ -1.03
CLN3-256ENST00000637107 A0A1B0GU33 70 aa8.58□□□□□ -1.04
CLN3-256ENST00000637107 FLGP20930 4061 aaPredicted RBP8.58□□□□□ -1.04
CLN3-256ENST00000637107 H1FX-AS1Q4G0G2 97 aa8.58□□□□□ -1.04
CLN3-256ENST00000637107 MT1HP80294 61 aa8.56□□□□□ -1.04
CLN3-256ENST00000637107 RBM12B-AS1Q9P1G2 102 aa8.55□□□□□ -1.04
CLN3-256ENST00000637107 H0YAA0 97 aa8.53□□□□□ -1.04
CLN3-256ENST00000637107 KTN1-AS1Q86SY8 53 aa8.5□□□□□ -1.05
CLN3-256ENST00000637107 KRTAP10-6P60371 365 aaPredicted RBP8.46□□□□□ -1.05
CLN3-256ENST00000637107 KRTAP3-2Q9BYR7 98 aa8.44□□□□□ -1.06
CLN3-256ENST00000637107 M0R2T5 61 aa8.42□□□□□ -1.06
CLN3-256ENST00000637107 CSAG1Q6PB30 78 aa8.35□□□□□ -1.07
CLN3-256ENST00000637107 P0C880 135 aa8.33□□□□□ -1.08
CLN3-256ENST00000637107 KRTAP13-4Q3LI77 160 aa8.31□□□□□ -1.08
CLN3-256ENST00000637107 ADM2Q7Z4H4 148 aa8.31□□□□□ -1.08
CLN3-256ENST00000637107 LORP23490 312 aaPredicted RBP8.31□□□□□ -1.08
CLN3-256ENST00000637107 PRAC1Q96KF2 57 aa8.21□□□□□ -1.09
CLN3-256ENST00000637107 K7ERS5 55 aa8.2□□□□□ -1.1
CLN3-256ENST00000637107 A0A0D9SG42 100 aa8.19□□□□□ -1.1
CLN3-256ENST00000637107 KRTAP9-8Q9BYQ0 159 aa8.17□□□□□ -1.1
CLN3-256ENST00000637107 H3BS24 57 aa8.1□□□□□ -1.11
CLN3-256ENST00000637107 M0QZ58 72 aa8.09□□□□□ -1.11
CLN3-256ENST00000637107 MT2AP02795 61 aa8.09□□□□□ -1.11
CLN3-256ENST00000637107 KRTAP9-2Q9BYQ4 174 aa8.05□□□□□ -1.12
CLN3-256ENST00000637107 MT1FP04733 61 aa8.04□□□□□ -1.12
CLN3-256ENST00000637107 LCE2DQ5TA82 110 aaPredicted RBP8.01□□□□□ -1.13
CLN3-256ENST00000637107 KRTAP12-2P59991 146 aa8.01□□□□□ -1.13
CLN3-256ENST00000637107 KRTAP12-1P59990 96 aa7.99□□□□□ -1.13
CLN3-256ENST00000637107 KRTAP10-10P60014 251 aa7.99□□□□□ -1.13
CLN3-256ENST00000637107 ROMO1P60602 79 aa7.97□□□□□ -1.13
CLN3-256ENST00000637107 SPINT4Q6UDR6 99 aa7.95□□□□□ -1.14
CLN3-256ENST00000637107 R4GN34 69 aa7.95□□□□□ -1.14
CLN3-256ENST00000637107 FSIP2Q5CZC0 6907 aa7.91□□□□□ -1.14
CLN3-256ENST00000637107 KRTAP9-3Q9BYQ3 159 aa7.9□□□□□ -1.15
CLN3-256ENST00000637107 KRTAP25-1Q3LHN0 102 aa7.88□□□□□ -1.15
CLN3-256ENST00000637107 LINC01554Q52M75 96 aa7.87□□□□□ -1.15
CLN3-256ENST00000637107 CRIPTQ9P021 101 aa7.83□□□□□ -1.16
CLN3-256ENST00000637107 LCE2BO14633 110 aa7.79□□□□□ -1.16
CLN3-256ENST00000637107 USH2AO75445 5202 aa7.77□□□□□ -1.17
CLN3-256ENST00000637107 KRTAP19-1Q8IUB9 90 aa7.68□□□□□ -1.18
CLN3-256ENST00000637107 CRCT1Q9UGL9 99 aa7.66□□□□□ -1.18
CLN3-256ENST00000637107 SSPOA2VEC9 5147 aa7.64□□□□□ -1.19
CLN3-256ENST00000637107 C10orf95Q9H7T3 257 aa7.64□□□□□ -1.19
CLN3-256ENST00000637107 KRTAP9-6A0A140TA67 174 aa7.62□□□□□ -1.19
CLN3-256ENST00000637107 SPRR2GQ9BYE4 73 aa7.62□□□□□ -1.19
CLN3-256ENST00000637107 KRTAP19-8Q3LI54 63 aa7.5□□□□□ -1.21
CLN3-256ENST00000637107 CAMK2N1Q7Z7J9 78 aa7.5□□□□□ -1.21
CLN3-256ENST00000637107 MT1BP07438 61 aa7.48□□□□□ -1.21
CLN3-256ENST00000637107 KRTAP19-6Q3LI70 58 aa7.4□□□□□ -1.22
CLN3-256ENST00000637107 FCGBPQ9Y6R7 5405 aaPredicted RBP7.39□□□□□ -1.23
CLN3-256ENST00000637107 A0A0A0MQY5 61 aa7.35□□□□□ -1.23
CLN3-256ENST00000637107 PLAC4Q8WY50 150 aa7.31□□□□□ -1.24
CLN3-256ENST00000637107 TNP1P09430 55 aa7.2□□□□□ -1.26
CLN3-256ENST00000637107 KRTAP10-5P60370 271 aa7.2□□□□□ -1.26
CLN3-256ENST00000637107 PP632Q6XCG6 107 aa7.19□□□□□ -1.26
CLN3-256ENST00000637107 MACF1Q9UPN3 7388 aaKnown RBP7.17□□□□□ -1.26
CLN3-256ENST00000637107 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.12□□□□□ -1.27
CLN3-256ENST00000637107 MT1XP80297 61 aa7.11□□□□□ -1.27
CLN3-256ENST00000637107 KRTAP15-1Q3LI76 137 aa7.1□□□□□ -1.27
CLN3-256ENST00000637107 KRTAP23-1A1A580 65 aa7.07□□□□□ -1.28
CLN3-256ENST00000637107 PRO2289Q9P1D8 64 aa7.05□□□□□ -1.28
CLN3-256ENST00000637107 SYNE2Q8WXH0 6885 aaKnown RBP7.02□□□□□ -1.29
CLN3-256ENST00000637107 KRTAP9-7A8MTY7 169 aa6.91□□□□□ -1.3
CLN3-256ENST00000637107 KMT2DO14686 5537 aa6.88□□□□□ -1.31
CLN3-256ENST00000637107 LCE3AQ5TA76 89 aa6.86□□□□□ -1.31
CLN3-256ENST00000637107 KRTAP10-7P60409 375 aaPredicted RBP6.82□□□□□ -1.32
CLN3-256ENST00000637107 KRTAP6-3Q3LI67 103 aa6.76□□□□□ -1.33
CLN3-256ENST00000637107 NDUFAF8A1L188 74 aa6.74□□□□□ -1.33
CLN3-256ENST00000637107 KRTAP10-12P60413 245 aa6.74□□□□□ -1.33
CLN3-256ENST00000637107 KRTAP4-8A0A0G2JLE6 195 aa6.72□□□□□ -1.33
CLN3-256ENST00000637107 KRTAP4-8Q9BYQ9 185 aa6.72□□□□□ -1.33
CLN3-256ENST00000637107 KRTAP8-1Q8IUC2 63 aa6.71□□□□□ -1.34
CLN3-256ENST00000637107 MUC12Q9UKN1 5478 aa6.65□□□□□ -1.34
CLN3-256ENST00000637107 KRTAP5-9P26371 169 aa6.63□□□□□ -1.35
CLN3-256ENST00000637107 SPRR5A0A1B0GTR4 108 aa6.58□□□□□ -1.36
CLN3-256ENST00000637107 LUZP6Q538Z0 58 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms