RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 KRTAP4-5Q9BYR2 181 aa8.3□□□□□ -1.08
CLN3-251ENST00000636853 PRAC1Q96KF2 57 aa8.28□□□□□ -1.08
CLN3-251ENST00000636853 XP32Q5T750 250 aa8.27□□□□□ -1.09
CLN3-251ENST00000636853 RPL37P61927 97 aaKnown RBP8.26□□□□□ -1.09
CLN3-251ENST00000636853 LINC01554Q52M75 96 aa8.25□□□□□ -1.09
CLN3-251ENST00000636853 KRTAP3-1Q9BYR8 98 aa8.23□□□□□ -1.09
CLN3-251ENST00000636853 ADM2Q7Z4H4 148 aa8.22□□□□□ -1.09
CLN3-251ENST00000636853 COX6B2Q6YFQ2 88 aa8.14□□□□□ -1.11
CLN3-251ENST00000636853 ABCA13Q86UQ4 5058 aa8.11□□□□□ -1.11
CLN3-251ENST00000636853 TPRXLQ17RH7 258 aa8.09□□□□□ -1.11
CLN3-251ENST00000636853 LPAP08519 4548 aa8.09□□□□□ -1.11
CLN3-251ENST00000636853 LRP2P98164 4655 aa8.07□□□□□ -1.12
CLN3-251ENST00000636853 CSAG1Q6PB30 78 aa8.05□□□□□ -1.12
CLN3-251ENST00000636853 J3QL48 77 aa8□□□□□ -1.13
CLN3-251ENST00000636853 HERC2O95714 4834 aa7.99□□□□□ -1.13
CLN3-251ENST00000636853 BIRC6Q9NR09 4857 aa7.97□□□□□ -1.13
CLN3-251ENST00000636853 H0YAA0 97 aa7.95□□□□□ -1.14
CLN3-251ENST00000636853 KRTAP3-3Q9BYR6 98 aa7.91□□□□□ -1.14
CLN3-251ENST00000636853 A0A1B0GU33 70 aa7.89□□□□□ -1.15
CLN3-251ENST00000636853 KRTAP25-1Q3LHN0 102 aa7.89□□□□□ -1.15
CLN3-251ENST00000636853 S4R3F8 94 aa7.88□□□□□ -1.15
CLN3-251ENST00000636853 H1FX-AS1Q4G0G2 97 aa7.87□□□□□ -1.15
CLN3-251ENST00000636853 H3BS24 57 aa7.8□□□□□ -1.16
CLN3-251ENST00000636853 SEC61BP60468 96 aaKnown RBP7.8□□□□□ -1.16
CLN3-251ENST00000636853 K7ERS5 55 aa7.77□□□□□ -1.17
CLN3-251ENST00000636853 MUC17Q685J3 4493 aa7.75□□□□□ -1.17
CLN3-251ENST00000636853 ROMO1P60602 79 aa7.73□□□□□ -1.17
CLN3-251ENST00000636853 KRTAP4-1Q9BYQ7 146 aa7.73□□□□□ -1.17
CLN3-251ENST00000636853 KRTAP10-6P60371 365 aaPredicted RBP7.72□□□□□ -1.17
CLN3-251ENST00000636853 KRTAP3-2Q9BYR7 98 aa7.7□□□□□ -1.18
CLN3-251ENST00000636853 PCLOQ9Y6V0 5065 aa7.7□□□□□ -1.18
CLN3-251ENST00000636853 P0C880 135 aa7.64□□□□□ -1.19
CLN3-251ENST00000636853 HERC1Q15751 4861 aa7.61□□□□□ -1.19
CLN3-251ENST00000636853 KRTAP13-4Q3LI77 160 aa7.6□□□□□ -1.19
CLN3-251ENST00000636853 KRTAP19-2Q3LHN2 52 aa7.53□□□□□ -1.2
CLN3-251ENST00000636853 MUC2Q02817 5179 aa7.52□□□□□ -1.2
CLN3-251ENST00000636853 HMCN2Q8NDA2 5059 aa7.51□□□□□ -1.21
CLN3-251ENST00000636853 A0A0D9SG42 100 aa7.51□□□□□ -1.21
CLN3-251ENST00000636853 CRIPTQ9P021 101 aa7.45□□□□□ -1.22
CLN3-251ENST00000636853 M0QZ58 72 aa7.36□□□□□ -1.23
CLN3-251ENST00000636853 FLGP20930 4061 aaPredicted RBP7.34□□□□□ -1.23
CLN3-251ENST00000636853 SPINT4Q6UDR6 99 aa7.32□□□□□ -1.24
CLN3-251ENST00000636853 KRTAP12-2P59991 146 aa7.31□□□□□ -1.24
CLN3-251ENST00000636853 LORP23490 312 aaPredicted RBP7.31□□□□□ -1.24
CLN3-251ENST00000636853 R4GN34 69 aa7.29□□□□□ -1.24
CLN3-251ENST00000636853 KRTAP12-1P59990 96 aa7.29□□□□□ -1.24
CLN3-251ENST00000636853 KRTAP15-1Q3LI76 137 aa7.27□□□□□ -1.25
CLN3-251ENST00000636853 LCE2CQ5TA81 110 aa7.22□□□□□ -1.25
CLN3-251ENST00000636853 C10orf95Q9H7T3 257 aa7.21□□□□□ -1.25
CLN3-251ENST00000636853 FAT4Q6V0I7 4981 aa7.18□□□□□ -1.26
CLN3-251ENST00000636853 UBR4Q5T4S7 5183 aa7.18□□□□□ -1.26
CLN3-251ENST00000636853 RNF213Q63HN8 5207 aa7.16□□□□□ -1.26
CLN3-251ENST00000636853 NDUFAF8A1L188 74 aa7.08□□□□□ -1.28
CLN3-251ENST00000636853 MT1HP80294 61 aa7.06□□□□□ -1.28
CLN3-251ENST00000636853 M0R2T5 61 aa7.05□□□□□ -1.28
CLN3-251ENST00000636853 CAMK2N1Q7Z7J9 78 aa6.88□□□□□ -1.31
CLN3-251ENST00000636853 MT2AP02795 61 aa6.85□□□□□ -1.31
CLN3-251ENST00000636853 MT1FP04733 61 aa6.84□□□□□ -1.31
CLN3-251ENST00000636853 KRTAP9-8Q9BYQ0 159 aa6.84□□□□□ -1.31
CLN3-251ENST00000636853 SPRR2GQ9BYE4 73 aa6.84□□□□□ -1.31
CLN3-251ENST00000636853 KRTAP10-10P60014 251 aa6.83□□□□□ -1.32
CLN3-251ENST00000636853 KRTAP19-1Q8IUB9 90 aa6.83□□□□□ -1.32
CLN3-251ENST00000636853 PLAC4Q8WY50 150 aa6.79□□□□□ -1.32
CLN3-251ENST00000636853 PP632Q6XCG6 107 aa6.74□□□□□ -1.33
CLN3-251ENST00000636853 KRTAP19-8Q3LI54 63 aa6.59□□□□□ -1.35
CLN3-251ENST00000636853 LUZP6Q538Z0 58 aa6.57□□□□□ -1.36
CLN3-251ENST00000636853 KRTAP9-3Q9BYQ3 159 aa6.57□□□□□ -1.36
CLN3-251ENST00000636853 TNP1P09430 55 aa6.56□□□□□ -1.36
CLN3-251ENST00000636853 MT1BP07438 61 aa6.53□□□□□ -1.36
CLN3-251ENST00000636853 KRTAP23-1A1A580 65 aa6.53□□□□□ -1.36
CLN3-251ENST00000636853 LCE2AQ5TA79 106 aaPredicted RBP6.51□□□□□ -1.37
CLN3-251ENST00000636853 A0A0A0MQY5 61 aa6.46□□□□□ -1.38
CLN3-251ENST00000636853 KRTAP10-5P60370 271 aa6.4□□□□□ -1.38
CLN3-251ENST00000636853 MT1XP80297 61 aa6.4□□□□□ -1.38
CLN3-251ENST00000636853 SPRR5A0A1B0GTR4 108 aa6.39□□□□□ -1.39
CLN3-251ENST00000636853 LCE2BO14633 110 aa6.37□□□□□ -1.39
CLN3-251ENST00000636853 LCE3AQ5TA76 89 aa6.29□□□□□ -1.4
CLN3-251ENST00000636853 USH2AO75445 5202 aa6.23□□□□□ -1.41
CLN3-251ENST00000636853 PRO2289Q9P1D8 64 aa6.22□□□□□ -1.41
CLN3-251ENST00000636853 KRTAP10-7P60409 375 aaPredicted RBP6.2□□□□□ -1.42
CLN3-251ENST00000636853 KRTAP10-12P60413 245 aa6.16□□□□□ -1.42
CLN3-251ENST00000636853 KRTAP8-1Q8IUC2 63 aa6.1□□□□□ -1.43
CLN3-251ENST00000636853 KRTAP12-3P60328 96 aa6□□□□□ -1.45
CLN3-251ENST00000636853 KMT2DO14686 5537 aa5.96□□□□□ -1.46
CLN3-251ENST00000636853 FSIP2Q5CZC0 6907 aa5.94□□□□□ -1.46
CLN3-251ENST00000636853 KRTAP4-8A0A0G2JLE6 195 aa5.91□□□□□ -1.46
CLN3-251ENST00000636853 KRTAP4-8Q9BYQ9 185 aa5.91□□□□□ -1.46
CLN3-251ENST00000636853 SSPOA2VEC9 5147 aa5.91□□□□□ -1.46
CLN3-251ENST00000636853 INE1O15225 51 aa5.88□□□□□ -1.47
CLN3-251ENST00000636853 KRTAP19-5Q3LI72 72 aa5.88□□□□□ -1.47
CLN3-251ENST00000636853 KRTAP19-6Q3LI70 58 aa5.82□□□□□ -1.48
CLN3-251ENST00000636853 KRTAP9-2Q9BYQ4 174 aa5.74□□□□□ -1.49
CLN3-251ENST00000636853 LCE2DQ5TA82 110 aaPredicted RBP5.73□□□□□ -1.49
CLN3-251ENST00000636853 KRTAP19-7Q3SYF9 63 aa5.71□□□□□ -1.5
CLN3-251ENST00000636853 LCE3CQ5T5A8 94 aa5.62□□□□□ -1.51
CLN3-251ENST00000636853 FCGBPQ9Y6R7 5405 aaPredicted RBP5.58□□□□□ -1.52
CLN3-251ENST00000636853 MT1EP04732 61 aa5.57□□□□□ -1.52
CLN3-251ENST00000636853 MT1LQ93083 61 aa5.51□□□□□ -1.53
CLN3-251ENST00000636853 KRTAP4-7Q9BYR0 210 aa5.5□□□□□ -1.53
CLN3-251ENST00000636853 CRCT1Q9UGL9 99 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 193.4 ms