RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 NDUFB1O75438 58 aa6.65□□□□□ -1.34
CLN3-249ENST00000636685 SPRR2EP22531 72 aa6.65□□□□□ -1.34
CLN3-249ENST00000636685 SPRR2BP35325 72 aa6.65□□□□□ -1.34
CLN3-249ENST00000636685 SPRR2AP35326 72 aa6.65□□□□□ -1.34
CLN3-249ENST00000636685 PRR15Q8IV56 129 aa6.65□□□□□ -1.34
CLN3-249ENST00000636685 DEFB116Q30KQ4 102 aa6.64□□□□□ -1.35
CLN3-249ENST00000636685 TMEM254Q8TBM7 123 aa6.64□□□□□ -1.35
CLN3-249ENST00000636685 C5orf47Q569G3 176 aa6.63□□□□□ -1.35
CLN3-249ENST00000636685 CYSTM1Q9H1C7 97 aa6.63□□□□□ -1.35
CLN3-249ENST00000636685 WFDC13Q8IUB5 93 aa6.62□□□□□ -1.35
CLN3-249ENST00000636685 SNURFQ9Y675 71 aa6.61□□□□□ -1.35
CLN3-249ENST00000636685 H7BZZ5 65 aa6.6□□□□□ -1.35
CLN3-249ENST00000636685 Q5VV11 94 aa6.6□□□□□ -1.35
CLN3-249ENST00000636685 ATP5EP56381 51 aaPredicted RBP6.59□□□□□ -1.35
CLN3-249ENST00000636685 CASC2Q6XLA1 102 aa6.59□□□□□ -1.35
CLN3-249ENST00000636685 ZCCHC13Q8WW36 166 aaKnown RBP6.59□□□□□ -1.35
CLN3-249ENST00000636685 SPRR2FQ96RM1 72 aa6.57□□□□□ -1.36
CLN3-249ENST00000636685 IGHV6-1A0A0B4J1U7 121 aa6.56□□□□□ -1.36
CLN3-249ENST00000636685 H3BPC8 53 aa6.55□□□□□ -1.36
CLN3-249ENST00000636685 MP68P56378 58 aa6.55□□□□□ -1.36
CLN3-249ENST00000636685 hDV103S1A0JD37 113 aa6.53□□□□□ -1.36
CLN3-249ENST00000636685 KRTAP19-8Q3LI54 63 aa6.53□□□□□ -1.36
CLN3-249ENST00000636685 SERP1Q9Y6X1 66 aa6.53□□□□□ -1.36
CLN3-249ENST00000636685 MMP24-AS1A0A0U1RRL7 71 aa6.52□□□□□ -1.37
CLN3-249ENST00000636685 A0A1B0GVX0 72 aa6.52□□□□□ -1.37
CLN3-249ENST00000636685 TP53AIP1Q9HCN2 124 aa6.52□□□□□ -1.37
CLN3-249ENST00000636685 C8orf17Q9NRJ1 99 aa6.52□□□□□ -1.37
CLN3-249ENST00000636685 H1FX-AS1Q4G0G2 97 aa6.51□□□□□ -1.37
CLN3-249ENST00000636685 H0Y9P7 68 aa6.47□□□□□ -1.37
CLN3-249ENST00000636685 C8orf87E5RJ46 101 aa6.46□□□□□ -1.38
CLN3-249ENST00000636685 LCE1AQ5T7P2 110 aa6.46□□□□□ -1.38
CLN3-249ENST00000636685 LINC00208Q96KT6 92 aa6.45□□□□□ -1.38
CLN3-249ENST00000636685 MRPL34Q9BQ48 92 aaKnown RBP6.45□□□□□ -1.38
CLN3-249ENST00000636685 SPRR2GQ9BYE4 73 aa6.44□□□□□ -1.38
CLN3-249ENST00000636685 TRAV22A0A0B4J277 110 aa6.43□□□□□ -1.38
CLN3-249ENST00000636685 SPRR2DP22532 72 aa6.43□□□□□ -1.38
CLN3-249ENST00000636685 C1orf64Q8NEQ6 169 aa6.42□□□□□ -1.38
CLN3-249ENST00000636685 SMIM26A0A096LP01 95 aa6.41□□□□□ -1.38
CLN3-249ENST00000636685 NDUFS5O43920 106 aa6.4□□□□□ -1.38
CLN3-249ENST00000636685 SPANXA2-OT1Q8N9U9 137 aa6.4□□□□□ -1.38
CLN3-249ENST00000636685 CYP4F30PQ9H0H9 118 aa6.4□□□□□ -1.38
CLN3-249ENST00000636685 LOC101927531A0A1B0GV80 90 aa6.32□□□□□ -1.4
CLN3-249ENST00000636685 LCE3BQ5TA77 95 aa6.31□□□□□ -1.4
CLN3-249ENST00000636685 KRTAP8-1Q8IUC2 63 aa6.3□□□□□ -1.4
CLN3-249ENST00000636685 Q5W150 140 aa6.25□□□□□ -1.41
CLN3-249ENST00000636685 C4orf26Q17RF5 130 aa6.24□□□□□ -1.41
CLN3-249ENST00000636685 V9GYY9 64 aa6.23□□□□□ -1.41
CLN3-249ENST00000636685 Q1T7F1 81 aa6.21□□□□□ -1.42
CLN3-249ENST00000636685 IGKV2-30P06310 120 aa6.18□□□□□ -1.42
CLN3-249ENST00000636685 IGKV2D-30A0A075B6S6 120 aa6.17□□□□□ -1.42
CLN3-249ENST00000636685 COA5Q86WW8 74 aa6.16□□□□□ -1.42
CLN3-249ENST00000636685 ACYP2P14621 99 aa6.15□□□□□ -1.42
CLN3-249ENST00000636685 DSTQ03001 7570 aaKnown RBP6.13□□□□□ -1.43
CLN3-249ENST00000636685 CSAG1Q6PB30 78 aa6.13□□□□□ -1.43
CLN3-249ENST00000636685 KRTAP4-9Q9BYQ8 210 aa6.11□□□□□ -1.43
CLN3-249ENST00000636685 SVIPQ8NHG7 77 aa6.1□□□□□ -1.43
CLN3-249ENST00000636685 S4R3F8 94 aa6.1□□□□□ -1.43
CLN3-249ENST00000636685 KRTAP4-8A0A0G2JLE6 195 aa6.09□□□□□ -1.43
CLN3-249ENST00000636685 MT1XP80297 61 aa6.09□□□□□ -1.43
CLN3-249ENST00000636685 C7orf65Q6ZTY9 151 aa6.09□□□□□ -1.43
CLN3-249ENST00000636685 KRTAP4-8Q9BYQ9 185 aa6.09□□□□□ -1.43
CLN3-249ENST00000636685 DMAC1Q96GE9 116 aa6.08□□□□□ -1.44
CLN3-249ENST00000636685 PRO2289Q9P1D8 64 aa6.07□□□□□ -1.44
CLN3-249ENST00000636685 LCA10Q71F78 164 aa6.06□□□□□ -1.44
CLN3-249ENST00000636685 LINC01558Q9Y6Z2 57 aa6.05□□□□□ -1.44
CLN3-249ENST00000636685 KRTAP12-2P59991 146 aa6.04□□□□□ -1.44
CLN3-249ENST00000636685 KRTAP3-1Q9BYR8 98 aa6.04□□□□□ -1.44
CLN3-249ENST00000636685 CHKB-CPT1BH3BT56 60 aa6.03□□□□□ -1.44
CLN3-249ENST00000636685 CRIPTQ9P021 101 aa6.03□□□□□ -1.44
CLN3-249ENST00000636685 PSPHP1O15172 72 aa6.02□□□□□ -1.45
CLN3-249ENST00000636685 A8MUN3 132 aa6.01□□□□□ -1.45
CLN3-249ENST00000636685 PRO0628Q9UI54 55 aa6.01□□□□□ -1.45
CLN3-249ENST00000636685 PRR15LQ9BU68 103 aa5.99□□□□□ -1.45
CLN3-249ENST00000636685 BRK1Q8WUW1 75 aa5.97□□□□□ -1.45
CLN3-249ENST00000636685 HMCN1Q96RW7 5635 aa5.94□□□□□ -1.46
CLN3-249ENST00000636685 AHNAK2Q8IVF2 5795 aa5.93□□□□□ -1.46
CLN3-249ENST00000636685 SPTSSBQ8NFR3 76 aa5.93□□□□□ -1.46
CLN3-249ENST00000636685 KRTAP3-3Q9BYR6 98 aa5.91□□□□□ -1.46
CLN3-249ENST00000636685 A6NED7 52 aa5.87□□□□□ -1.47
CLN3-249ENST00000636685 A0A1B0GU69 56 aa5.85□□□□□ -1.47
CLN3-249ENST00000636685 LCE1DQ5T752 114 aa5.85□□□□□ -1.47
CLN3-249ENST00000636685 PLAC4Q8WY50 150 aa5.85□□□□□ -1.47
CLN3-249ENST00000636685 CDC42SE1Q9NRR8 79 aa5.82□□□□□ -1.48
CLN3-249ENST00000636685 SEC61GP60059 68 aa5.81□□□□□ -1.48
CLN3-249ENST00000636685 KRTAP10-7P60409 375 aaPredicted RBP5.81□□□□□ -1.48
CLN3-249ENST00000636685 KRTAP5-10Q6L8G5 202 aa5.79□□□□□ -1.48
CLN3-249ENST00000636685 UQCR11O14957 56 aa5.75□□□□□ -1.49
CLN3-249ENST00000636685 KRTAP10-12P60413 245 aa5.75□□□□□ -1.49
CLN3-249ENST00000636685 SPATA8Q6RVD6 105 aa5.73□□□□□ -1.49
CLN3-249ENST00000636685 MT4P47944 62 aa5.71□□□□□ -1.5
CLN3-249ENST00000636685 PMAIP1Q13794 54 aa5.7□□□□□ -1.5
CLN3-249ENST00000636685 A8MU10 97 aa5.68□□□□□ -1.5
CLN3-249ENST00000636685 H0YAA0 97 aa5.68□□□□□ -1.5
CLN3-249ENST00000636685 MIR22HGQ0VDD5 57 aa5.68□□□□□ -1.5
CLN3-249ENST00000636685 ADM2Q7Z4H4 148 aa5.66□□□□□ -1.5
CLN3-249ENST00000636685 KRTAP5-7Q6L8G8 165 aa5.65□□□□□ -1.5
CLN3-249ENST00000636685 LCE5AQ5TCM9 118 aa5.64□□□□□ -1.51
CLN3-249ENST00000636685 A0A1B0GU33 70 aa5.61□□□□□ -1.51
CLN3-249ENST00000636685 LCE4AQ5TA78 99 aa5.61□□□□□ -1.51
CLN3-249ENST00000636685 R4GN34 69 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 137.7 ms