RNA–Protein interactions for RNA: ENST00000632758.1

LIMS4-203, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 1,580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-203ENST00000632758 M0R2T5 61 aa7.17□□□□□ -1.26
LIMS4-203ENST00000632758 ACYP2P14621 99 aa7.17□□□□□ -1.26
LIMS4-203ENST00000632758 KRTAP3-3Q9BYR6 98 aa7.16□□□□□ -1.26
LIMS4-203ENST00000632758 TMEM258P61165 79 aa7.08□□□□□ -1.28
LIMS4-203ENST00000632758 KRTAP10-6P60371 365 aaPredicted RBP7.06□□□□□ -1.28
LIMS4-203ENST00000632758 CSAG1Q6PB30 78 aa7.06□□□□□ -1.28
LIMS4-203ENST00000632758 COA5Q86WW8 74 aa7.06□□□□□ -1.28
LIMS4-203ENST00000632758 CHKB-CPT1BH3BT56 60 aa7.04□□□□□ -1.28
LIMS4-203ENST00000632758 ATP5EP56381 51 aaPredicted RBP7.03□□□□□ -1.28
LIMS4-203ENST00000632758 LORP23490 312 aaPredicted RBP7.03□□□□□ -1.28
LIMS4-203ENST00000632758 KRTAP9-8Q9BYQ0 159 aa6.99□□□□□ -1.29
LIMS4-203ENST00000632758 LCE2DQ5TA82 110 aaPredicted RBP6.96□□□□□ -1.29
LIMS4-203ENST00000632758 MT2AP02795 61 aa6.93□□□□□ -1.3
LIMS4-203ENST00000632758 SPTSSBQ8NFR3 76 aa6.93□□□□□ -1.3
LIMS4-203ENST00000632758 MT1FP04733 61 aa6.89□□□□□ -1.31
LIMS4-203ENST00000632758 KRTAP3-2Q9BYR7 98 aa6.87□□□□□ -1.31
LIMS4-203ENST00000632758 SERP1Q9Y6X1 66 aa6.87□□□□□ -1.31
LIMS4-203ENST00000632758 ADM2Q7Z4H4 148 aa6.86□□□□□ -1.31
LIMS4-203ENST00000632758 H0YAA0 97 aa6.85□□□□□ -1.31
LIMS4-203ENST00000632758 KRTAP10-10P60014 251 aa6.85□□□□□ -1.31
LIMS4-203ENST00000632758 P0C880 135 aa6.79□□□□□ -1.32
LIMS4-203ENST00000632758 KRTAP9-3Q9BYQ3 159 aa6.74□□□□□ -1.33
LIMS4-203ENST00000632758 RPS28P62857 69 aaKnown RBP6.72□□□□□ -1.33
LIMS4-203ENST00000632758 SVIPQ8NHG7 77 aa6.7□□□□□ -1.34
LIMS4-203ENST00000632758 SEC61GP60059 68 aa6.69□□□□□ -1.34
LIMS4-203ENST00000632758 LINC01558Q9Y6Z2 57 aa6.69□□□□□ -1.34
LIMS4-203ENST00000632758 A0A1B0GU69 56 aa6.67□□□□□ -1.34
LIMS4-203ENST00000632758 SMIM26A0A096LP01 95 aa6.65□□□□□ -1.34
LIMS4-203ENST00000632758 KRTAP19-1Q8IUB9 90 aa6.65□□□□□ -1.34
LIMS4-203ENST00000632758 CRIPTQ9P021 101 aa6.65□□□□□ -1.35
LIMS4-203ENST00000632758 KRTAP9-2Q9BYQ4 174 aa6.62□□□□□ -1.35
LIMS4-203ENST00000632758 LCE2BO14633 110 aa6.61□□□□□ -1.35
LIMS4-203ENST00000632758 SPRR2GQ9BYE4 73 aa6.61□□□□□ -1.35
LIMS4-203ENST00000632758 R4GN34 69 aa6.61□□□□□ -1.35
LIMS4-203ENST00000632758 M0QZ58 72 aa6.6□□□□□ -1.35
LIMS4-203ENST00000632758 Q1T7F1 81 aa6.6□□□□□ -1.35
LIMS4-203ENST00000632758 KRTAP13-4Q3LI77 160 aa6.57□□□□□ -1.36
LIMS4-203ENST00000632758 PRR15LQ9BU68 103 aa6.57□□□□□ -1.36
LIMS4-203ENST00000632758 A0A1B0GU33 70 aa6.57□□□□□ -1.36
LIMS4-203ENST00000632758 V9GYY9 64 aa6.57□□□□□ -1.36
LIMS4-203ENST00000632758 USH2AO75445 5202 aa6.55□□□□□ -1.36
LIMS4-203ENST00000632758 PSPHP1O15172 72 aa6.53□□□□□ -1.36
LIMS4-203ENST00000632758 SPATA8Q6RVD6 105 aa6.52□□□□□ -1.37
LIMS4-203ENST00000632758 KRTAP19-8Q3LI54 63 aa6.5□□□□□ -1.37
LIMS4-203ENST00000632758 LINC01554Q52M75 96 aa6.5□□□□□ -1.37
LIMS4-203ENST00000632758 Q5VV11 94 aa6.47□□□□□ -1.37
LIMS4-203ENST00000632758 MT1BP07438 61 aa6.46□□□□□ -1.38
LIMS4-203ENST00000632758 A0A0D9SG42 100 aa6.4□□□□□ -1.38
LIMS4-203ENST00000632758 FSIP2Q5CZC0 6907 aa6.4□□□□□ -1.38
LIMS4-203ENST00000632758 SSPOA2VEC9 5147 aa6.4□□□□□ -1.38
LIMS4-203ENST00000632758 UQCR11O14957 56 aa6.4□□□□□ -1.39
LIMS4-203ENST00000632758 A8MU10 97 aa6.39□□□□□ -1.39
LIMS4-203ENST00000632758 KRTAP9-6A0A140TA67 174 aa6.33□□□□□ -1.4
LIMS4-203ENST00000632758 PLAC4Q8WY50 150 aa6.33□□□□□ -1.4
LIMS4-203ENST00000632758 MIR22HGQ0VDD5 57 aa6.32□□□□□ -1.4
LIMS4-203ENST00000632758 A6NN06 94 aa6.31□□□□□ -1.4
LIMS4-203ENST00000632758 A6NED7 52 aa6.31□□□□□ -1.4
LIMS4-203ENST00000632758 KRTAP12-1P59990 96 aa6.28□□□□□ -1.4
LIMS4-203ENST00000632758 SPINT4Q6UDR6 99 aa6.27□□□□□ -1.41
LIMS4-203ENST00000632758 CRCT1Q9UGL9 99 aa6.27□□□□□ -1.41
LIMS4-203ENST00000632758 KRTAP12-2P59991 146 aa6.26□□□□□ -1.41
LIMS4-203ENST00000632758 KRTAP19-6Q3LI70 58 aa6.25□□□□□ -1.41
LIMS4-203ENST00000632758 MT1XP80297 61 aa6.18□□□□□ -1.42
LIMS4-203ENST00000632758 KRTAP10-5P60370 271 aa6.17□□□□□ -1.42
LIMS4-203ENST00000632758 CAMK2N1Q7Z7J9 78 aa6.15□□□□□ -1.42
LIMS4-203ENST00000632758 FCGBPQ9Y6R7 5405 aaPredicted RBP6.14□□□□□ -1.43
LIMS4-203ENST00000632758 CDC42SE1Q9NRR8 79 aa6.14□□□□□ -1.43
LIMS4-203ENST00000632758 PRO2289Q9P1D8 64 aa6.09□□□□□ -1.43
LIMS4-203ENST00000632758 K7ERS5 55 aa6.04□□□□□ -1.44
LIMS4-203ENST00000632758 BRK1Q8WUW1 75 aa6.02□□□□□ -1.45
LIMS4-203ENST00000632758 PRO0628Q9UI54 55 aa5.98□□□□□ -1.45
LIMS4-203ENST00000632758 C10orf95Q9H7T3 257 aa5.97□□□□□ -1.45
LIMS4-203ENST00000632758 KRTAP10-7P60409 375 aaPredicted RBP5.93□□□□□ -1.46
LIMS4-203ENST00000632758 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.85□□□□□ -1.47
LIMS4-203ENST00000632758 KRTAP10-12P60413 245 aa5.85□□□□□ -1.47
LIMS4-203ENST00000632758 KMT2DO14686 5537 aa5.83□□□□□ -1.48
LIMS4-203ENST00000632758 MACF1Q9UPN3 7388 aaKnown RBP5.81□□□□□ -1.48
LIMS4-203ENST00000632758 TNP1P09430 55 aa5.8□□□□□ -1.48
LIMS4-203ENST00000632758 KRTAP4-8A0A0G2JLE6 195 aa5.8□□□□□ -1.48
LIMS4-203ENST00000632758 KRTAP4-8Q9BYQ9 185 aa5.8□□□□□ -1.48
LIMS4-203ENST00000632758 ROMO1P60602 79 aa5.78□□□□□ -1.48
LIMS4-203ENST00000632758 KRTAP9-7A8MTY7 169 aa5.72□□□□□ -1.49
LIMS4-203ENST00000632758 KRTAP25-1Q3LHN0 102 aa5.71□□□□□ -1.5
LIMS4-203ENST00000632758 PMAIP1Q13794 54 aa5.68□□□□□ -1.5
LIMS4-203ENST00000632758 SYNE2Q8WXH0 6885 aaKnown RBP5.68□□□□□ -1.5
LIMS4-203ENST00000632758 KRTAP8-1Q8IUC2 63 aa5.66□□□□□ -1.5
LIMS4-203ENST00000632758 LCE3AQ5TA76 89 aa5.65□□□□□ -1.5
LIMS4-203ENST00000632758 KRTAP6-3Q3LI67 103 aa5.59□□□□□ -1.52
LIMS4-203ENST00000632758 KRTAP5-9P26371 169 aa5.55□□□□□ -1.52
LIMS4-203ENST00000632758 SPRR2FQ96RM1 72 aa5.53□□□□□ -1.52
LIMS4-203ENST00000632758 KRTAP19-5Q3LI72 72 aa5.52□□□□□ -1.53
LIMS4-203ENST00000632758 KRTAP19-7Q3SYF9 63 aa5.52□□□□□ -1.53
LIMS4-203ENST00000632758 LOC100996750A0A140TA64 210 aa5.51□□□□□ -1.53
LIMS4-203ENST00000632758 KRTAP4-6Q9BYQ5 205 aa5.51□□□□□ -1.53
LIMS4-203ENST00000632758 KRTAP23-1A1A580 65 aa5.5□□□□□ -1.53
LIMS4-203ENST00000632758 MUC12Q9UKN1 5478 aa5.48□□□□□ -1.53
LIMS4-203ENST00000632758 KTN1-AS1Q86SY8 53 aa5.47□□□□□ -1.53
LIMS4-203ENST00000632758 H3BS24 57 aa5.45□□□□□ -1.54
LIMS4-203ENST00000632758 MT1EP04732 61 aa5.43□□□□□ -1.54
LIMS4-203ENST00000632758 PP632Q6XCG6 107 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms