RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 KRTAP9-3Q9BYQ3 159 aa9.54□□□□□ -0.88
PTCD3-220ENST00000627371 KRTAP9-6A0A140TA67 174 aa9.48□□□□□ -0.89
PTCD3-220ENST00000627371 CRCT1Q9UGL9 99 aa9.45□□□□□ -0.9
PTCD3-220ENST00000627371 LCE2BO14633 110 aa9.42□□□□□ -0.9
PTCD3-220ENST00000627371 DMAC1Q96GE9 116 aa9.42□□□□□ -0.9
PTCD3-220ENST00000627371 NDUFC1O43677 76 aa9.41□□□□□ -0.9
PTCD3-220ENST00000627371 SERP2Q8N6R1 65 aa9.41□□□□□ -0.9
PTCD3-220ENST00000627371 USH2AO75445 5202 aa9.38□□□□□ -0.91
PTCD3-220ENST00000627371 SNURFQ9Y675 71 aa9.36□□□□□ -0.91
PTCD3-220ENST00000627371 C20orf197Q8N268 126 aa9.32□□□□□ -0.92
PTCD3-220ENST00000627371 H0YAA0 97 aa9.26□□□□□ -0.93
PTCD3-220ENST00000627371 SSPOA2VEC9 5147 aa9.24□□□□□ -0.93
PTCD3-220ENST00000627371 ACYP2P14621 99 aa9.24□□□□□ -0.93
PTCD3-220ENST00000627371 COX7CP15954 63 aa9.22□□□□□ -0.93
PTCD3-220ENST00000627371 KRTAP19-1Q8IUB9 90 aa9.22□□□□□ -0.93
PTCD3-220ENST00000627371 SPANXA2-OT1Q8N9U9 137 aa9.21□□□□□ -0.94
PTCD3-220ENST00000627371 SPRR2GQ9BYE4 73 aa9.16□□□□□ -0.94
PTCD3-220ENST00000627371 CRIPTQ9P021 101 aa9.15□□□□□ -0.94
PTCD3-220ENST00000627371 ADM2Q7Z4H4 148 aa9.14□□□□□ -0.95
PTCD3-220ENST00000627371 CHKB-CPT1BH3BT56 60 aa9.07□□□□□ -0.96
PTCD3-220ENST00000627371 ANAPC13Q9BS18 74 aa9.07□□□□□ -0.96
PTCD3-220ENST00000627371 SPTSSBQ8NFR3 76 aa9.06□□□□□ -0.96
PTCD3-220ENST00000627371 KRTAP19-8Q3LI54 63 aa9.05□□□□□ -0.96
PTCD3-220ENST00000627371 KRTAP19-6Q3LI70 58 aa9.04□□□□□ -0.96
PTCD3-220ENST00000627371 CYSTM1Q9H1C7 97 aa9.02□□□□□ -0.97
PTCD3-220ENST00000627371 H7BZZ5 65 aa9.01□□□□□ -0.97
PTCD3-220ENST00000627371 Q5VV11 94 aa9.01□□□□□ -0.97
PTCD3-220ENST00000627371 MT1BP07438 61 aa8.99□□□□□ -0.97
PTCD3-220ENST00000627371 P0C880 135 aa8.98□□□□□ -0.97
PTCD3-220ENST00000627371 FCGBPQ9Y6R7 5405 aaPredicted RBP8.97□□□□□ -0.97
PTCD3-220ENST00000627371 COA5Q86WW8 74 aa8.92□□□□□ -0.98
PTCD3-220ENST00000627371 R4GN34 69 aa8.89□□□□□ -0.99
PTCD3-220ENST00000627371 CCDC179H3BU77 68 aa8.88□□□□□ -0.99
PTCD3-220ENST00000627371 M0QZ58 72 aa8.83□□□□□ -1
PTCD3-220ENST00000627371 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.79□□□□□ -1
PTCD3-220ENST00000627371 A6NN06 94 aa8.74□□□□□ -1.01
PTCD3-220ENST00000627371 MACF1Q9UPN3 7388 aaKnown RBP8.71□□□□□ -1.01
PTCD3-220ENST00000627371 KRTAP10-5P60370 271 aa8.71□□□□□ -1.02
PTCD3-220ENST00000627371 ATP5EP56381 51 aaPredicted RBP8.69□□□□□ -1.02
PTCD3-220ENST00000627371 LINC01554Q52M75 96 aa8.67□□□□□ -1.02
PTCD3-220ENST00000627371 PLAC4Q8WY50 150 aa8.66□□□□□ -1.02
PTCD3-220ENST00000627371 SEC61GP60059 68 aa8.62□□□□□ -1.03
PTCD3-220ENST00000627371 SERP1Q9Y6X1 66 aa8.6□□□□□ -1.03
PTCD3-220ENST00000627371 TMEM258P61165 79 aa8.59□□□□□ -1.03
PTCD3-220ENST00000627371 KRTAP9-7A8MTY7 169 aa8.57□□□□□ -1.04
PTCD3-220ENST00000627371 SYNE2Q8WXH0 6885 aaKnown RBP8.55□□□□□ -1.04
PTCD3-220ENST00000627371 KRTAP13-4Q3LI77 160 aa8.54□□□□□ -1.04
PTCD3-220ENST00000627371 PRO2289Q9P1D8 64 aa8.53□□□□□ -1.04
PTCD3-220ENST00000627371 MT1XP80297 61 aa8.52□□□□□ -1.05
PTCD3-220ENST00000627371 A0A1B0GU69 56 aa8.45□□□□□ -1.06
PTCD3-220ENST00000627371 A0A1B0GU33 70 aa8.44□□□□□ -1.06
PTCD3-220ENST00000627371 SPATA8Q6RVD6 105 aa8.37□□□□□ -1.07
PTCD3-220ENST00000627371 KRTAP6-3Q3LI67 103 aa8.34□□□□□ -1.07
PTCD3-220ENST00000627371 LINC01558Q9Y6Z2 57 aa8.32□□□□□ -1.08
PTCD3-220ENST00000627371 PRR15LQ9BU68 103 aa8.31□□□□□ -1.08
PTCD3-220ENST00000627371 A0A0D9SG42 100 aa8.3□□□□□ -1.08
PTCD3-220ENST00000627371 KRTAP12-2P59991 146 aa8.26□□□□□ -1.09
PTCD3-220ENST00000627371 CAMK2N1Q7Z7J9 78 aa8.22□□□□□ -1.09
PTCD3-220ENST00000627371 SMIM26A0A096LP01 95 aa8.2□□□□□ -1.1
PTCD3-220ENST00000627371 KMT2DO14686 5537 aa8.17□□□□□ -1.1
PTCD3-220ENST00000627371 KRTAP12-1P59990 96 aa8.17□□□□□ -1.1
PTCD3-220ENST00000627371 PCP4P48539 62 aa8.16□□□□□ -1.1
PTCD3-220ENST00000627371 SPINT4Q6UDR6 99 aa8.16□□□□□ -1.1
PTCD3-220ENST00000627371 KRTAP10-7P60409 375 aaPredicted RBP8.14□□□□□ -1.11
PTCD3-220ENST00000627371 A8MU10 97 aa8.13□□□□□ -1.11
PTCD3-220ENST00000627371 KRTAP5-9P26371 169 aa8.13□□□□□ -1.11
PTCD3-220ENST00000627371 KRTAP10-12P60413 245 aa8.1□□□□□ -1.11
PTCD3-220ENST00000627371 V9GYY9 64 aa8.05□□□□□ -1.12
PTCD3-220ENST00000627371 MUC12Q9UKN1 5478 aa8.04□□□□□ -1.12
PTCD3-220ENST00000627371 UQCR11O14957 56 aa8.04□□□□□ -1.12
PTCD3-220ENST00000627371 KRTAP8-1Q8IUC2 63 aa8.04□□□□□ -1.12
PTCD3-220ENST00000627371 KRTAP4-8A0A0G2JLE6 195 aa8.02□□□□□ -1.13
PTCD3-220ENST00000627371 KRTAP4-8Q9BYQ9 185 aa8.02□□□□□ -1.13
PTCD3-220ENST00000627371 Q1T7F1 81 aa8.01□□□□□ -1.13
PTCD3-220ENST00000627371 NEBP20929 6669 aa7.99□□□□□ -1.13
PTCD3-220ENST00000627371 SPRR2FQ96RM1 72 aa7.95□□□□□ -1.14
PTCD3-220ENST00000627371 LOC100996750A0A140TA64 210 aa7.94□□□□□ -1.14
PTCD3-220ENST00000627371 KRTAP4-6Q9BYQ5 205 aa7.94□□□□□ -1.14
PTCD3-220ENST00000627371 PSPHP1O15172 72 aa7.93□□□□□ -1.14
PTCD3-220ENST00000627371 RPS28P62857 69 aaKnown RBP7.91□□□□□ -1.14
PTCD3-220ENST00000627371 MIR22HGQ0VDD5 57 aa7.89□□□□□ -1.15
PTCD3-220ENST00000627371 MDN1Q9NU22 5596 aa7.84□□□□□ -1.15
PTCD3-220ENST00000627371 C10orf95Q9H7T3 257 aa7.77□□□□□ -1.17
PTCD3-220ENST00000627371 SPRR2EP22531 72 aa7.75□□□□□ -1.17
PTCD3-220ENST00000627371 SPRR2BP35325 72 aa7.75□□□□□ -1.17
PTCD3-220ENST00000627371 SPRR2AP35326 72 aa7.75□□□□□ -1.17
PTCD3-220ENST00000627371 LCE1AQ5T7P2 110 aa7.7□□□□□ -1.18
PTCD3-220ENST00000627371 A6NED7 52 aa7.69□□□□□ -1.18
PTCD3-220ENST00000627371 TNP1P09430 55 aa7.69□□□□□ -1.18
PTCD3-220ENST00000627371 K7ERS5 55 aa7.67□□□□□ -1.18
PTCD3-220ENST00000627371 KRTAP19-7Q3SYF9 63 aa7.61□□□□□ -1.19
PTCD3-220ENST00000627371 KRTAP20-1Q3LI63 56 aa7.55□□□□□ -1.2
PTCD3-220ENST00000627371 MT1EP04732 61 aa7.53□□□□□ -1.2
PTCD3-220ENST00000627371 LCE3AQ5TA76 89 aa7.52□□□□□ -1.21
PTCD3-220ENST00000627371 KRTAP19-5Q3LI72 72 aa7.51□□□□□ -1.21
PTCD3-220ENST00000627371 SPRR2DP22532 72 aa7.49□□□□□ -1.21
PTCD3-220ENST00000627371 KRTAP2-3P0C7H8 128 aa7.44□□□□□ -1.22
PTCD3-220ENST00000627371 KRTAP2-4Q9BYR9 128 aa7.44□□□□□ -1.22
PTCD3-220ENST00000627371 KRTAP25-1Q3LHN0 102 aa7.43□□□□□ -1.22
PTCD3-220ENST00000627371 CDC42SE1Q9NRR8 79 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms