RNA–Protein interactions for RNA: ENST00000621856.1

SPAST-204, Transcript of spastin, humanhuman

TSL 1 (best) BASIC

Gene SPAST, Length 1,715 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-204ENST00000621856 H1FX-AS1Q4G0G2 97 aa10.8□□□□□ -0.68
SPAST-204ENST00000621856 HMCN2Q8NDA2 5059 aa10.77□□□□□ -0.69
SPAST-204ENST00000621856 S4R3F8 94 aa10.76□□□□□ -0.69
SPAST-204ENST00000621856 Q5VV11 94 aa10.72□□□□□ -0.69
SPAST-204ENST00000621856 LCA10Q71F78 164 aa10.72□□□□□ -0.69
SPAST-204ENST00000621856 A0A1B0GU69 56 aa10.7□□□□□ -0.7
SPAST-204ENST00000621856 KRTAP3-3Q9BYR6 98 aa10.66□□□□□ -0.7
SPAST-204ENST00000621856 SEC61GP60059 68 aa10.62□□□□□ -0.71
SPAST-204ENST00000621856 A6NED7 52 aa10.53□□□□□ -0.72
SPAST-204ENST00000621856 BRK1Q8WUW1 75 aa10.51□□□□□ -0.73
SPAST-204ENST00000621856 KRTAP19-2Q3LHN2 52 aa10.5□□□□□ -0.73
SPAST-204ENST00000621856 CSAG1Q6PB30 78 aa10.5□□□□□ -0.73
SPAST-204ENST00000621856 UQCR11O14957 56 aa10.38□□□□□ -0.75
SPAST-204ENST00000621856 A0A1B0GU33 70 aa10.33□□□□□ -0.76
SPAST-204ENST00000621856 MUC2Q02817 5179 aa10.33□□□□□ -0.76
SPAST-204ENST00000621856 CDC42SE1Q9NRR8 79 aa10.33□□□□□ -0.76
SPAST-204ENST00000621856 KRTAP3-2Q9BYR7 98 aa10.31□□□□□ -0.76
SPAST-204ENST00000621856 KRTAP10-6P60371 365 aaPredicted RBP10.3□□□□□ -0.76
SPAST-204ENST00000621856 ADM2Q7Z4H4 148 aa10.3□□□□□ -0.76
SPAST-204ENST00000621856 A8MU10 97 aa10.3□□□□□ -0.76
SPAST-204ENST00000621856 MIR22HGQ0VDD5 57 aa10.29□□□□□ -0.76
SPAST-204ENST00000621856 PRO0628Q9UI54 55 aa10.28□□□□□ -0.76
SPAST-204ENST00000621856 P0C880 135 aa10.24□□□□□ -0.77
SPAST-204ENST00000621856 SPATA8Q6RVD6 105 aa10.24□□□□□ -0.77
SPAST-204ENST00000621856 H0YAA0 97 aa10.22□□□□□ -0.77
SPAST-204ENST00000621856 LCE2CQ5TA81 110 aa10.22□□□□□ -0.77
SPAST-204ENST00000621856 RNF213Q63HN8 5207 aa10.21□□□□□ -0.78
SPAST-204ENST00000621856 UBR4Q5T4S7 5183 aa10.21□□□□□ -0.78
SPAST-204ENST00000621856 FLGP20930 4061 aaPredicted RBP10.19□□□□□ -0.78
SPAST-204ENST00000621856 KRTAP13-4Q3LI77 160 aa10.06□□□□□ -0.8
SPAST-204ENST00000621856 MT1HP80294 61 aa10.04□□□□□ -0.8
SPAST-204ENST00000621856 M0R2T5 61 aa10.02□□□□□ -0.8
SPAST-204ENST00000621856 M0QZ58 72 aa9.98□□□□□ -0.81
SPAST-204ENST00000621856 A0A0D9SG42 100 aa9.95□□□□□ -0.82
SPAST-204ENST00000621856 FAT4Q6V0I7 4981 aa9.93□□□□□ -0.82
SPAST-204ENST00000621856 R4GN34 69 aa9.93□□□□□ -0.82
SPAST-204ENST00000621856 PMAIP1Q13794 54 aa9.92□□□□□ -0.82
SPAST-204ENST00000621856 LORP23490 312 aaPredicted RBP9.9□□□□□ -0.82
SPAST-204ENST00000621856 K7ERS5 55 aa9.82□□□□□ -0.84
SPAST-204ENST00000621856 A6NN06 94 aa9.82□□□□□ -0.84
SPAST-204ENST00000621856 LINC01554Q52M75 96 aa9.79□□□□□ -0.84
SPAST-204ENST00000621856 CRIPTQ9P021 101 aa9.76□□□□□ -0.85
SPAST-204ENST00000621856 SPINT4Q6UDR6 99 aa9.7□□□□□ -0.86
SPAST-204ENST00000621856 KRTAP12-1P59990 96 aa9.69□□□□□ -0.86
SPAST-204ENST00000621856 MT2AP02795 61 aa9.68□□□□□ -0.86
SPAST-204ENST00000621856 KRTAP12-2P59991 146 aa9.68□□□□□ -0.86
SPAST-204ENST00000621856 KRTAP9-8Q9BYQ0 159 aa9.66□□□□□ -0.86
SPAST-204ENST00000621856 KRTAP10-10P60014 251 aa9.64□□□□□ -0.87
SPAST-204ENST00000621856 MT1FP04733 61 aa9.62□□□□□ -0.87
SPAST-204ENST00000621856 SVIPQ8NHG7 77 aa9.61□□□□□ -0.87
SPAST-204ENST00000621856 LCE2AQ5TA79 106 aaPredicted RBP9.52□□□□□ -0.89
SPAST-204ENST00000621856 KTN1-AS1Q86SY8 53 aa9.52□□□□□ -0.89
SPAST-204ENST00000621856 SPRR2GQ9BYE4 73 aa9.51□□□□□ -0.89
SPAST-204ENST00000621856 KRTAP19-1Q8IUB9 90 aa9.48□□□□□ -0.89
SPAST-204ENST00000621856 ROMO1P60602 79 aa9.41□□□□□ -0.9
SPAST-204ENST00000621856 CAMK2N1Q7Z7J9 78 aa9.34□□□□□ -0.92
SPAST-204ENST00000621856 KRTAP9-3Q9BYQ3 159 aa9.31□□□□□ -0.92
SPAST-204ENST00000621856 PLAC4Q8WY50 150 aa9.3□□□□□ -0.92
SPAST-204ENST00000621856 PRAC1Q96KF2 57 aa9.3□□□□□ -0.92
SPAST-204ENST00000621856 LCE2DQ5TA82 110 aaPredicted RBP9.27□□□□□ -0.93
SPAST-204ENST00000621856 KRTAP19-8Q3LI54 63 aa9.25□□□□□ -0.93
SPAST-204ENST00000621856 C10orf95Q9H7T3 257 aa9.17□□□□□ -0.94
SPAST-204ENST00000621856 MT1BP07438 61 aa9.12□□□□□ -0.95
SPAST-204ENST00000621856 LCE2BO14633 110 aa9.04□□□□□ -0.96
SPAST-204ENST00000621856 KRTAP25-1Q3LHN0 102 aa9.03□□□□□ -0.96
SPAST-204ENST00000621856 TNP1P09430 55 aa8.88□□□□□ -0.99
SPAST-204ENST00000621856 MT1XP80297 61 aa8.85□□□□□ -0.99
SPAST-204ENST00000621856 KRTAP10-5P60370 271 aa8.84□□□□□ -0.99
SPAST-204ENST00000621856 PRO2289Q9P1D8 64 aa8.77□□□□□ -1
SPAST-204ENST00000621856 USH2AO75445 5202 aa8.67□□□□□ -1.02
SPAST-204ENST00000621856 PP632Q6XCG6 107 aa8.66□□□□□ -1.02
SPAST-204ENST00000621856 KRTAP23-1A1A580 65 aa8.57□□□□□ -1.04
SPAST-204ENST00000621856 KRTAP10-7P60409 375 aaPredicted RBP8.52□□□□□ -1.05
SPAST-204ENST00000621856 LCE3AQ5TA76 89 aa8.48□□□□□ -1.05
SPAST-204ENST00000621856 KRTAP10-12P60413 245 aa8.47□□□□□ -1.05
SPAST-204ENST00000621856 KRTAP19-6Q3LI70 58 aa8.45□□□□□ -1.06
SPAST-204ENST00000621856 SSPOA2VEC9 5147 aa8.42□□□□□ -1.06
SPAST-204ENST00000621856 KRTAP8-1Q8IUC2 63 aa8.26□□□□□ -1.09
SPAST-204ENST00000621856 KRTAP9-2Q9BYQ4 174 aa8.23□□□□□ -1.09
SPAST-204ENST00000621856 FSIP2Q5CZC0 6907 aa8.22□□□□□ -1.09
SPAST-204ENST00000621856 KRTAP4-8A0A0G2JLE6 195 aa8.16□□□□□ -1.1
SPAST-204ENST00000621856 KRTAP4-8Q9BYQ9 185 aa8.16□□□□□ -1.1
SPAST-204ENST00000621856 KRTAP12-3P60328 96 aa8.12□□□□□ -1.11
SPAST-204ENST00000621856 KRTAP19-5Q3LI72 72 aa8.06□□□□□ -1.12
SPAST-204ENST00000621856 KMT2DO14686 5537 aa8.01□□□□□ -1.13
SPAST-204ENST00000621856 FCGBPQ9Y6R7 5405 aaPredicted RBP8.01□□□□□ -1.13
SPAST-204ENST00000621856 KRTAP15-1Q3LI76 137 aa7.99□□□□□ -1.13
SPAST-204ENST00000621856 CRCT1Q9UGL9 99 aa7.97□□□□□ -1.13
SPAST-204ENST00000621856 KRTAP19-7Q3SYF9 63 aa7.89□□□□□ -1.15
SPAST-204ENST00000621856 MT1EP04732 61 aa7.75□□□□□ -1.17
SPAST-204ENST00000621856 SPRR5A0A1B0GTR4 108 aa7.68□□□□□ -1.18
SPAST-204ENST00000621856 MT1LQ93083 61 aa7.62□□□□□ -1.19
SPAST-204ENST00000621856 LCE3CQ5T5A8 94 aa7.6□□□□□ -1.19
SPAST-204ENST00000621856 MACF1Q9UPN3 7388 aaKnown RBP7.59□□□□□ -1.19
SPAST-204ENST00000621856 SPRR2FQ96RM1 72 aa7.56□□□□□ -1.2
SPAST-204ENST00000621856 LUZP6Q538Z0 58 aa7.55□□□□□ -1.2
SPAST-204ENST00000621856 KRTAP9-6A0A140TA67 174 aa7.54□□□□□ -1.2
SPAST-204ENST00000621856 KRTAP19-4Q3LI73 84 aa7.52□□□□□ -1.2
SPAST-204ENST00000621856 NDUFAF8A1L188 74 aa7.45□□□□□ -1.22
SPAST-204ENST00000621856 KRTAP19-3Q7Z4W3 81 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms