RNA–Protein interactions for RNA: ENST00000620429.4

VPS11-207, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5 BASIC

Gene VPS11, Length 2,739 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-207ENST00000620429 PKHD1P08F94 4074 aa5.64□□□□□ -1.51
VPS11-207ENST00000620429 KIAA1109Q2LD37 5005 aa5.63□□□□□ -1.51
VPS11-207ENST00000620429 VPS13BQ7Z7G8 4022 aa5.62□□□□□ -1.51
VPS11-207ENST00000620429 RYR1P21817 5038 aa5.6□□□□□ -1.51
VPS11-207ENST00000620429 COX6B2Q6YFQ2 88 aa5.6□□□□□ -1.51
VPS11-207ENST00000620429 RPL37P61927 97 aaKnown RBP5.59□□□□□ -1.52
VPS11-207ENST00000620429 J3QL48 77 aa5.57□□□□□ -1.52
VPS11-207ENST00000620429 C10orf95Q9H7T3 257 aa5.56□□□□□ -1.52
VPS11-207ENST00000620429 KRTAP4-5Q9BYR2 181 aa5.55□□□□□ -1.52
VPS11-207ENST00000620429 HSPG2P98160 4391 aa5.55□□□□□ -1.52
VPS11-207ENST00000620429 KRTAP1-4P0C5Y4 121 aa5.54□□□□□ -1.52
VPS11-207ENST00000620429 FAT1Q14517 4588 aa5.52□□□□□ -1.53
VPS11-207ENST00000620429 ABCA13Q86UQ4 5058 aa5.51□□□□□ -1.53
VPS11-207ENST00000620429 SMR3BP02814 79 aaPredicted RBP5.5□□□□□ -1.53
VPS11-207ENST00000620429 KRTAP3-1Q9BYR8 98 aa5.5□□□□□ -1.53
VPS11-207ENST00000620429 APOBP04114 4563 aaKnown RBP5.47□□□□□ -1.53
VPS11-207ENST00000620429 SEC61BP60468 96 aaKnown RBP5.44□□□□□ -1.54
VPS11-207ENST00000620429 Q5VSD8 79 aa5.43□□□□□ -1.54
VPS11-207ENST00000620429 C9orf92A6NGG3 77 aa5.4□□□□□ -1.54
VPS11-207ENST00000620429 KRTAP13-4Q3LI77 160 aa5.4□□□□□ -1.55
VPS11-207ENST00000620429 KRTAP10-6P60371 365 aaPredicted RBP5.39□□□□□ -1.55
VPS11-207ENST00000620429 A0A0D9SG42 100 aa5.37□□□□□ -1.55
VPS11-207ENST00000620429 KRTAP10-4P60372 401 aaPredicted RBP5.37□□□□□ -1.55
VPS11-207ENST00000620429 XP32Q5T750 250 aa5.36□□□□□ -1.55
VPS11-207ENST00000620429 S4R3F8 94 aa5.36□□□□□ -1.55
VPS11-207ENST00000620429 RPS29P62273 56 aaKnown RBP5.35□□□□□ -1.55
VPS11-207ENST00000620429 KRTAP3-2Q9BYR7 98 aa5.34□□□□□ -1.55
VPS11-207ENST00000620429 PKHD1L1Q86WI1 4243 aa5.34□□□□□ -1.55
VPS11-207ENST00000620429 LRP1Q07954 4544 aaKnown RBP5.31□□□□□ -1.56
VPS11-207ENST00000620429 DMBT1Q9UGM3 2413 aaPredicted RBP5.3□□□□□ -1.56
VPS11-207ENST00000620429 KRTAP12-2P59991 146 aa5.28□□□□□ -1.56
VPS11-207ENST00000620429 HERC1Q15751 4861 aa5.28□□□□□ -1.56
VPS11-207ENST00000620429 MYCBP2O75592 4640 aa5.26□□□□□ -1.57
VPS11-207ENST00000620429 PLAC4Q8WY50 150 aa5.25□□□□□ -1.57
VPS11-207ENST00000620429 TNXBP22105 4242 aa5.23□□□□□ -1.57
VPS11-207ENST00000620429 KRTAP12-1P59990 96 aa5.23□□□□□ -1.57
VPS11-207ENST00000620429 KRTAP3-3Q9BYR6 98 aa5.23□□□□□ -1.57
VPS11-207ENST00000620429 FAT3Q8TDW7 4589 aa5.21□□□□□ -1.58
VPS11-207ENST00000620429 HMCN2Q8NDA2 5059 aa5.14□□□□□ -1.59
VPS11-207ENST00000620429 KRTAP10-8P60410 259 aa5.14□□□□□ -1.59
VPS11-207ENST00000620429 MT1HL1P0DM35 61 aa5.1□□□□□ -1.59
VPS11-207ENST00000620429 CAMK2N1Q7Z7J9 78 aa5.1□□□□□ -1.59
VPS11-207ENST00000620429 M0QZ58 72 aa5.04□□□□□ -1.6
VPS11-207ENST00000620429 LPAP08519 4548 aa4.98□□□□□ -1.61
VPS11-207ENST00000620429 PRO2289Q9P1D8 64 aa4.96□□□□□ -1.61
VPS11-207ENST00000620429 LRP2P98164 4655 aa4.95□□□□□ -1.62
VPS11-207ENST00000620429 UBR4Q5T4S7 5183 aa4.94□□□□□ -1.62
VPS11-207ENST00000620429 PP632Q6XCG6 107 aa4.93□□□□□ -1.62
VPS11-207ENST00000620429 SPRR5A0A1B0GTR4 108 aa4.85□□□□□ -1.63
VPS11-207ENST00000620429 RNF213Q63HN8 5207 aa4.84□□□□□ -1.64
VPS11-207ENST00000620429 KRTAP9-2Q9BYQ4 174 aa4.79□□□□□ -1.64
VPS11-207ENST00000620429 INE1O15225 51 aa4.77□□□□□ -1.65
VPS11-207ENST00000620429 LCE2AQ5TA79 106 aaPredicted RBP4.76□□□□□ -1.65
VPS11-207ENST00000620429 R4GN34 69 aa4.76□□□□□ -1.65
VPS11-207ENST00000620429 KRTAP9-6A0A140TA67 174 aa4.74□□□□□ -1.65
VPS11-207ENST00000620429 MUC17Q685J3 4493 aa4.71□□□□□ -1.66
VPS11-207ENST00000620429 KRTAP4-1Q9BYQ7 146 aa4.7□□□□□ -1.66
VPS11-207ENST00000620429 LCE2DQ5TA82 110 aaPredicted RBP4.67□□□□□ -1.66
VPS11-207ENST00000620429 MUC2Q02817 5179 aa4.66□□□□□ -1.66
VPS11-207ENST00000620429 KRTAP23-1A1A580 65 aa4.65□□□□□ -1.66
VPS11-207ENST00000620429 LORP23490 312 aaPredicted RBP4.65□□□□□ -1.67
VPS11-207ENST00000620429 FAT4Q6V0I7 4981 aa4.62□□□□□ -1.67
VPS11-207ENST00000620429 KRTAP19-2Q3LHN2 52 aa4.55□□□□□ -1.68
VPS11-207ENST00000620429 CRCT1Q9UGL9 99 aa4.52□□□□□ -1.69
VPS11-207ENST00000620429 TNP1P09430 55 aa4.5□□□□□ -1.69
VPS11-207ENST00000620429 FLGP20930 4061 aaPredicted RBP4.44□□□□□ -1.7
VPS11-207ENST00000620429 LCE2CQ5TA81 110 aa4.38□□□□□ -1.71
VPS11-207ENST00000620429 MT1HP80294 61 aa4.36□□□□□ -1.71
VPS11-207ENST00000620429 M0R2T5 61 aa4.23□□□□□ -1.73
VPS11-207ENST00000620429 KRTAP9-7A8MTY7 169 aa4.23□□□□□ -1.73
VPS11-207ENST00000620429 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.21□□□□□ -1.74
VPS11-207ENST00000620429 LCE3AQ5TA76 89 aa4.16□□□□□ -1.74
VPS11-207ENST00000620429 KRTAP19-1Q8IUB9 90 aa4.15□□□□□ -1.75
VPS11-207ENST00000620429 MT1FP04733 61 aa4.14□□□□□ -1.75
VPS11-207ENST00000620429 MT2AP02795 61 aa4.13□□□□□ -1.75
VPS11-207ENST00000620429 KRTAP10-10P60014 251 aa4.12□□□□□ -1.75
VPS11-207ENST00000620429 SPRR2GQ9BYE4 73 aa4.12□□□□□ -1.75
VPS11-207ENST00000620429 KRTAP8-1Q8IUC2 63 aa4.11□□□□□ -1.75
VPS11-207ENST00000620429 KRTAP9-8Q9BYQ0 159 aa4.11□□□□□ -1.75
VPS11-207ENST00000620429 FSIP2Q5CZC0 6907 aa4.1□□□□□ -1.75
VPS11-207ENST00000620429 KRTAP10-12P60413 245 aa4.07□□□□□ -1.76
VPS11-207ENST00000620429 KRTAP19-6Q3LI70 58 aa3.99□□□□□ -1.77
VPS11-207ENST00000620429 KRTAP9-3Q9BYQ3 159 aa3.98□□□□□ -1.77
VPS11-207ENST00000620429 KRTAP6-3Q3LI67 103 aa3.96□□□□□ -1.78
VPS11-207ENST00000620429 MT1BP07438 61 aa3.95□□□□□ -1.78
VPS11-207ENST00000620429 LCE2BO14633 110 aa3.95□□□□□ -1.78
VPS11-207ENST00000620429 KRTAP19-8Q3LI54 63 aa3.95□□□□□ -1.78
VPS11-207ENST00000620429 KRTAP12-3P60328 96 aa3.94□□□□□ -1.78
VPS11-207ENST00000620429 USH2AO75445 5202 aa3.94□□□□□ -1.78
VPS11-207ENST00000620429 SSPOA2VEC9 5147 aa3.93□□□□□ -1.78
VPS11-207ENST00000620429 FCGBPQ9Y6R7 5405 aaPredicted RBP3.91□□□□□ -1.78
VPS11-207ENST00000620429 KRTAP10-5P60370 271 aa3.9□□□□□ -1.79
VPS11-207ENST00000620429 MT1XP80297 61 aa3.89□□□□□ -1.79
VPS11-207ENST00000620429 KRTAP2-3P0C7H8 128 aa3.81□□□□□ -1.8
VPS11-207ENST00000620429 KRTAP2-4Q9BYR9 128 aa3.81□□□□□ -1.8
VPS11-207ENST00000620429 KRTAP2-1Q9BYU5 128 aa3.81□□□□□ -1.8
VPS11-207ENST00000620429 KRTAP10-7P60409 375 aaPredicted RBP3.81□□□□□ -1.8
VPS11-207ENST00000620429 MACF1Q9UPN3 7388 aaKnown RBP3.81□□□□□ -1.8
VPS11-207ENST00000620429 LCE3CQ5T5A8 94 aa3.76□□□□□ -1.81
VPS11-207ENST00000620429 KMT2DO14686 5537 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms