RNA–Protein interactions for RNA: ENST00000611950.1

PCDHGC3-202, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS ALT2 BASIC

Gene PCDHGC3, Length 2,849 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-202ENST00000611950 LCE2BO14633 110 aa6.08□□□□□ -1.44
PCDHGC3-202ENST00000611950 KRTAP13-2Q52LG2 175 aa6.08□□□□□ -1.44
PCDHGC3-202ENST00000611950 FLG2Q5D862 2391 aaPredicted RBP6.08□□□□□ -1.44
PCDHGC3-202ENST00000611950 APOBP04114 4563 aaKnown RBP6.07□□□□□ -1.44
PCDHGC3-202ENST00000611950 KRTAP10-1P60331 282 aa6.07□□□□□ -1.44
PCDHGC3-202ENST00000611950 IGKV2D-30A0A075B6S6 120 aa6.06□□□□□ -1.44
PCDHGC3-202ENST00000611950 IGKV2-30P06310 120 aa6.06□□□□□ -1.44
PCDHGC3-202ENST00000611950 KRTAP13-3Q3SY46 172 aa6.05□□□□□ -1.44
PCDHGC3-202ENST00000611950 ACYP2P14621 99 aa6.05□□□□□ -1.44
PCDHGC3-202ENST00000611950 SSBP3-AS1Q7Z2R9 100 aa6.05□□□□□ -1.44
PCDHGC3-202ENST00000611950 KRTAP23-1A1A580 65 aa6.04□□□□□ -1.44
PCDHGC3-202ENST00000611950 Q6ZSA8 131 aa6.04□□□□□ -1.44
PCDHGC3-202ENST00000611950 CRIPTQ9P021 101 aa6.01□□□□□ -1.45
PCDHGC3-202ENST00000611950 Q5VSD8 79 aa6.01□□□□□ -1.45
PCDHGC3-202ENST00000611950 SMR3BP02814 79 aaPredicted RBP5.99□□□□□ -1.45
PCDHGC3-202ENST00000611950 KRTAP1-4P0C5Y4 121 aa5.99□□□□□ -1.45
PCDHGC3-202ENST00000611950 SPINK1P00995 79 aa5.98□□□□□ -1.45
PCDHGC3-202ENST00000611950 MYCBP2O75592 4640 aa5.98□□□□□ -1.45
PCDHGC3-202ENST00000611950 TYMSOSQ8TAI1 123 aa5.94□□□□□ -1.46
PCDHGC3-202ENST00000611950 FAT1Q14517 4588 aa5.93□□□□□ -1.46
PCDHGC3-202ENST00000611950 C9orf92A6NGG3 77 aa5.9□□□□□ -1.46
PCDHGC3-202ENST00000611950 H0YAA0 97 aa5.83□□□□□ -1.48
PCDHGC3-202ENST00000611950 TPRXLQ17RH7 258 aa5.81□□□□□ -1.48
PCDHGC3-202ENST00000611950 UBR4Q5T4S7 5183 aa5.8□□□□□ -1.48
PCDHGC3-202ENST00000611950 PKHD1L1Q86WI1 4243 aa5.79□□□□□ -1.48
PCDHGC3-202ENST00000611950 CAMK2N1Q7Z7J9 78 aa5.79□□□□□ -1.48
PCDHGC3-202ENST00000611950 RPS29P62273 56 aaKnown RBP5.75□□□□□ -1.49
PCDHGC3-202ENST00000611950 LRP1Q07954 4544 aaKnown RBP5.75□□□□□ -1.49
PCDHGC3-202ENST00000611950 KRTAP10-4P60372 401 aaPredicted RBP5.74□□□□□ -1.49
PCDHGC3-202ENST00000611950 HMCN2Q8NDA2 5059 aa5.72□□□□□ -1.49
PCDHGC3-202ENST00000611950 KRTAP3-1Q9BYR8 98 aa5.67□□□□□ -1.5
PCDHGC3-202ENST00000611950 LORP23490 312 aaPredicted RBP5.66□□□□□ -1.5
PCDHGC3-202ENST00000611950 FAT3Q8TDW7 4589 aa5.63□□□□□ -1.51
PCDHGC3-202ENST00000611950 RNF213Q63HN8 5207 aa5.63□□□□□ -1.51
PCDHGC3-202ENST00000611950 C10orf95Q9H7T3 257 aa5.63□□□□□ -1.51
PCDHGC3-202ENST00000611950 A0A1B0GU33 70 aa5.61□□□□□ -1.51
PCDHGC3-202ENST00000611950 MT1HL1P0DM35 61 aa5.61□□□□□ -1.51
PCDHGC3-202ENST00000611950 TNXBP22105 4242 aa5.6□□□□□ -1.51
PCDHGC3-202ENST00000611950 LRP2P98164 4655 aa5.59□□□□□ -1.52
PCDHGC3-202ENST00000611950 H1FX-AS1Q4G0G2 97 aa5.56□□□□□ -1.52
PCDHGC3-202ENST00000611950 COX6B2Q6YFQ2 88 aa5.51□□□□□ -1.53
PCDHGC3-202ENST00000611950 A0A0D9SG42 100 aa5.5□□□□□ -1.53
PCDHGC3-202ENST00000611950 LPAP08519 4548 aa5.49□□□□□ -1.53
PCDHGC3-202ENST00000611950 KRTAP10-8P60410 259 aa5.49□□□□□ -1.53
PCDHGC3-202ENST00000611950 PRO2289Q9P1D8 64 aa5.43□□□□□ -1.54
PCDHGC3-202ENST00000611950 KRTAP13-4Q3LI77 160 aa5.42□□□□□ -1.54
PCDHGC3-202ENST00000611950 RPL37P61927 97 aaKnown RBP5.41□□□□□ -1.54
PCDHGC3-202ENST00000611950 XP32Q5T750 250 aa5.4□□□□□ -1.55
PCDHGC3-202ENST00000611950 KRTAP10-6P60371 365 aaPredicted RBP5.38□□□□□ -1.55
PCDHGC3-202ENST00000611950 PLAC4Q8WY50 150 aa5.36□□□□□ -1.55
PCDHGC3-202ENST00000611950 S4R3F8 94 aa5.36□□□□□ -1.55
PCDHGC3-202ENST00000611950 KRTAP9-2Q9BYQ4 174 aa5.32□□□□□ -1.56
PCDHGC3-202ENST00000611950 R4GN34 69 aa5.32□□□□□ -1.56
PCDHGC3-202ENST00000611950 MUC2Q02817 5179 aa5.32□□□□□ -1.56
PCDHGC3-202ENST00000611950 KRTAP12-2P59991 146 aa5.24□□□□□ -1.57
PCDHGC3-202ENST00000611950 KRTAP9-6A0A140TA67 174 aa5.22□□□□□ -1.57
PCDHGC3-202ENST00000611950 FAT4Q6V0I7 4981 aa5.13□□□□□ -1.59
PCDHGC3-202ENST00000611950 KRTAP12-1P59990 96 aa5.13□□□□□ -1.59
PCDHGC3-202ENST00000611950 M0QZ58 72 aa5.08□□□□□ -1.6
PCDHGC3-202ENST00000611950 INE1O15225 51 aa5.06□□□□□ -1.6
PCDHGC3-202ENST00000611950 MUC17Q685J3 4493 aa5.05□□□□□ -1.6
PCDHGC3-202ENST00000611950 FSIP2Q5CZC0 6907 aa5.01□□□□□ -1.61
PCDHGC3-202ENST00000611950 KRTAP4-1Q9BYQ7 146 aa4.99□□□□□ -1.61
PCDHGC3-202ENST00000611950 CRCT1Q9UGL9 99 aa4.98□□□□□ -1.61
PCDHGC3-202ENST00000611950 KRTAP19-2Q3LHN2 52 aa4.89□□□□□ -1.63
PCDHGC3-202ENST00000611950 SPRR5A0A1B0GTR4 108 aa4.84□□□□□ -1.63
PCDHGC3-202ENST00000611950 FLGP20930 4061 aaPredicted RBP4.79□□□□□ -1.64
PCDHGC3-202ENST00000611950 MT1HP80294 61 aa4.79□□□□□ -1.64
PCDHGC3-202ENST00000611950 M0R2T5 61 aa4.76□□□□□ -1.65
PCDHGC3-202ENST00000611950 PP632Q6XCG6 107 aa4.73□□□□□ -1.65
PCDHGC3-202ENST00000611950 KRTAP9-7A8MTY7 169 aa4.68□□□□□ -1.66
PCDHGC3-202ENST00000611950 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.64□□□□□ -1.67
PCDHGC3-202ENST00000611950 TNP1P09430 55 aa4.54□□□□□ -1.68
PCDHGC3-202ENST00000611950 USH2AO75445 5202 aa4.53□□□□□ -1.68
PCDHGC3-202ENST00000611950 SSPOA2VEC9 5147 aa4.52□□□□□ -1.69
PCDHGC3-202ENST00000611950 KRTAP9-8Q9BYQ0 159 aa4.48□□□□□ -1.69
PCDHGC3-202ENST00000611950 FCGBPQ9Y6R7 5405 aaPredicted RBP4.48□□□□□ -1.69
PCDHGC3-202ENST00000611950 KRTAP19-1Q8IUB9 90 aa4.47□□□□□ -1.69
PCDHGC3-202ENST00000611950 SPRR2GQ9BYE4 73 aa4.47□□□□□ -1.69
PCDHGC3-202ENST00000611950 KRTAP10-10P60014 251 aa4.43□□□□□ -1.7
PCDHGC3-202ENST00000611950 MT2AP02795 61 aa4.4□□□□□ -1.7
PCDHGC3-202ENST00000611950 MT1FP04733 61 aa4.4□□□□□ -1.7
PCDHGC3-202ENST00000611950 LCE5AQ5TCM9 118 aa4.4□□□□□ -1.7
PCDHGC3-202ENST00000611950 LCE3AQ5TA76 89 aa4.37□□□□□ -1.71
PCDHGC3-202ENST00000611950 MACF1Q9UPN3 7388 aaKnown RBP4.37□□□□□ -1.71
PCDHGC3-202ENST00000611950 KRTAP9-4Q9BYQ2 154 aa4.35□□□□□ -1.71
PCDHGC3-202ENST00000611950 SYNE2Q8WXH0 6885 aaKnown RBP4.35□□□□□ -1.71
PCDHGC3-202ENST00000611950 KRTAP9-3Q9BYQ3 159 aa4.35□□□□□ -1.71
PCDHGC3-202ENST00000611950 KRTAP19-8Q3LI54 63 aa4.27□□□□□ -1.73
PCDHGC3-202ENST00000611950 KRTAP19-6Q3LI70 58 aa4.27□□□□□ -1.73
PCDHGC3-202ENST00000611950 MT1BP07438 61 aa4.25□□□□□ -1.73
PCDHGC3-202ENST00000611950 LCE4AQ5TA78 99 aa4.24□□□□□ -1.73
PCDHGC3-202ENST00000611950 KMT2DO14686 5537 aa4.23□□□□□ -1.73
PCDHGC3-202ENST00000611950 KRTAP6-3Q3LI67 103 aa4.22□□□□□ -1.73
PCDHGC3-202ENST00000611950 KRTAP10-5P60370 271 aa4.21□□□□□ -1.74
PCDHGC3-202ENST00000611950 KRTAP9-9Q9BYP9 154 aa4.21□□□□□ -1.74
PCDHGC3-202ENST00000611950 MT1XP80297 61 aa4.21□□□□□ -1.74
PCDHGC3-202ENST00000611950 KRTAP10-7P60409 375 aaPredicted RBP4.16□□□□□ -1.74
PCDHGC3-202ENST00000611950 KRTAP10-12P60413 245 aa4.14□□□□□ -1.75
PCDHGC3-202ENST00000611950 KRTAP8-1Q8IUC2 63 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms