RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 LCE2CQ5TA81 110 aa7.64□□□□□ -1.19
UPF1-206ENST00000598471 COA5Q86WW8 74 aa7.64□□□□□ -1.19
UPF1-206ENST00000598471 SPTSSBQ8NFR3 76 aa7.59□□□□□ -1.19
UPF1-206ENST00000598471 LCA10Q71F78 164 aa7.58□□□□□ -1.2
UPF1-206ENST00000598471 SERP1Q9Y6X1 66 aa7.58□□□□□ -1.2
UPF1-206ENST00000598471 FLGP20930 4061 aaPredicted RBP7.52□□□□□ -1.21
UPF1-206ENST00000598471 CSAG1Q6PB30 78 aa7.52□□□□□ -1.21
UPF1-206ENST00000598471 MT1HP80294 61 aa7.51□□□□□ -1.21
UPF1-206ENST00000598471 M0R2T5 61 aa7.49□□□□□ -1.21
UPF1-206ENST00000598471 KRTAP3-3Q9BYR6 98 aa7.49□□□□□ -1.21
UPF1-206ENST00000598471 RPS28P62857 69 aaKnown RBP7.46□□□□□ -1.22
UPF1-206ENST00000598471 SMIM26A0A096LP01 95 aa7.36□□□□□ -1.23
UPF1-206ENST00000598471 H0YAA0 97 aa7.32□□□□□ -1.24
UPF1-206ENST00000598471 SEC61GP60059 68 aa7.32□□□□□ -1.24
UPF1-206ENST00000598471 KRTAP10-6P60371 365 aaPredicted RBP7.32□□□□□ -1.24
UPF1-206ENST00000598471 LORP23490 312 aaPredicted RBP7.3□□□□□ -1.24
UPF1-206ENST00000598471 V9GYY9 64 aa7.3□□□□□ -1.24
UPF1-206ENST00000598471 LINC01558Q9Y6Z2 57 aa7.28□□□□□ -1.24
UPF1-206ENST00000598471 ADM2Q7Z4H4 148 aa7.27□□□□□ -1.25
UPF1-206ENST00000598471 A0A1B0GU69 56 aa7.26□□□□□ -1.25
UPF1-206ENST00000598471 PRR15LQ9BU68 103 aa7.26□□□□□ -1.25
UPF1-206ENST00000598471 Q1T7F1 81 aa7.24□□□□□ -1.25
UPF1-206ENST00000598471 KRTAP9-2Q9BYQ4 174 aa7.23□□□□□ -1.25
UPF1-206ENST00000598471 KRTAP9-8Q9BYQ0 159 aa7.18□□□□□ -1.26
UPF1-206ENST00000598471 KRTAP3-2Q9BYR7 98 aa7.18□□□□□ -1.26
UPF1-206ENST00000598471 MT2AP02795 61 aa7.16□□□□□ -1.26
UPF1-206ENST00000598471 LCE2DQ5TA82 110 aaPredicted RBP7.16□□□□□ -1.26
UPF1-206ENST00000598471 P0C880 135 aa7.15□□□□□ -1.26
UPF1-206ENST00000598471 KRTAP10-10P60014 251 aa7.14□□□□□ -1.27
UPF1-206ENST00000598471 PSPHP1O15172 72 aa7.11□□□□□ -1.27
UPF1-206ENST00000598471 MT1FP04733 61 aa7.11□□□□□ -1.27
UPF1-206ENST00000598471 CRIPTQ9P021 101 aa7.11□□□□□ -1.27
UPF1-206ENST00000598471 A0A1B0GU33 70 aa7.09□□□□□ -1.27
UPF1-206ENST00000598471 R4GN34 69 aa7.06□□□□□ -1.28
UPF1-206ENST00000598471 Q5VV11 94 aa7.04□□□□□ -1.28
UPF1-206ENST00000598471 M0QZ58 72 aa7.03□□□□□ -1.28
UPF1-206ENST00000598471 KRTAP9-6A0A140TA67 174 aa7□□□□□ -1.29
UPF1-206ENST00000598471 UQCR11O14957 56 aa7□□□□□ -1.29
UPF1-206ENST00000598471 A6NED7 52 aa6.95□□□□□ -1.3
UPF1-206ENST00000598471 SPRR2GQ9BYE4 73 aa6.94□□□□□ -1.3
UPF1-206ENST00000598471 SPATA8Q6RVD6 105 aa6.93□□□□□ -1.3
UPF1-206ENST00000598471 KRTAP9-3Q9BYQ3 159 aa6.93□□□□□ -1.3
UPF1-206ENST00000598471 KRTAP13-4Q3LI77 160 aa6.92□□□□□ -1.3
UPF1-206ENST00000598471 MIR22HGQ0VDD5 57 aa6.9□□□□□ -1.3
UPF1-206ENST00000598471 KRTAP19-1Q8IUB9 90 aa6.9□□□□□ -1.3
UPF1-206ENST00000598471 LINC01554Q52M75 96 aa6.89□□□□□ -1.31
UPF1-206ENST00000598471 CRCT1Q9UGL9 99 aa6.88□□□□□ -1.31
UPF1-206ENST00000598471 LCE2BO14633 110 aa6.85□□□□□ -1.31
UPF1-206ENST00000598471 USH2AO75445 5202 aa6.85□□□□□ -1.31
UPF1-206ENST00000598471 A0A0D9SG42 100 aa6.84□□□□□ -1.31
UPF1-206ENST00000598471 FSIP2Q5CZC0 6907 aa6.81□□□□□ -1.32
UPF1-206ENST00000598471 A8MU10 97 aa6.8□□□□□ -1.32
UPF1-206ENST00000598471 KRTAP19-8Q3LI54 63 aa6.79□□□□□ -1.32
UPF1-206ENST00000598471 A6NN06 94 aa6.78□□□□□ -1.32
UPF1-206ENST00000598471 CDC42SE1Q9NRR8 79 aa6.78□□□□□ -1.32
UPF1-206ENST00000598471 SSPOA2VEC9 5147 aa6.74□□□□□ -1.33
UPF1-206ENST00000598471 PLAC4Q8WY50 150 aa6.73□□□□□ -1.33
UPF1-206ENST00000598471 SPINT4Q6UDR6 99 aa6.71□□□□□ -1.34
UPF1-206ENST00000598471 K7ERS5 55 aa6.7□□□□□ -1.34
UPF1-206ENST00000598471 BRK1Q8WUW1 75 aa6.7□□□□□ -1.34
UPF1-206ENST00000598471 KRTAP12-1P59990 96 aa6.69□□□□□ -1.34
UPF1-206ENST00000598471 MT1BP07438 61 aa6.68□□□□□ -1.34
UPF1-206ENST00000598471 KRTAP12-2P59991 146 aa6.65□□□□□ -1.34
UPF1-206ENST00000598471 CAMK2N1Q7Z7J9 78 aa6.61□□□□□ -1.35
UPF1-206ENST00000598471 FCGBPQ9Y6R7 5405 aaPredicted RBP6.53□□□□□ -1.36
UPF1-206ENST00000598471 KRTAP19-6Q3LI70 58 aa6.52□□□□□ -1.37
UPF1-206ENST00000598471 PRO2289Q9P1D8 64 aa6.49□□□□□ -1.37
UPF1-206ENST00000598471 PRO0628Q9UI54 55 aa6.45□□□□□ -1.38
UPF1-206ENST00000598471 KRTAP10-5P60370 271 aa6.42□□□□□ -1.38
UPF1-206ENST00000598471 MT1XP80297 61 aa6.42□□□□□ -1.38
UPF1-206ENST00000598471 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.39□□□□□ -1.39
UPF1-206ENST00000598471 PMAIP1Q13794 54 aa6.33□□□□□ -1.4
UPF1-206ENST00000598471 ROMO1P60602 79 aa6.32□□□□□ -1.4
UPF1-206ENST00000598471 C10orf95Q9H7T3 257 aa6.32□□□□□ -1.4
UPF1-206ENST00000598471 KRTAP9-7A8MTY7 169 aa6.24□□□□□ -1.41
UPF1-206ENST00000598471 TNP1P09430 55 aa6.24□□□□□ -1.41
UPF1-206ENST00000598471 KRTAP25-1Q3LHN0 102 aa6.21□□□□□ -1.42
UPF1-206ENST00000598471 MACF1Q9UPN3 7388 aaKnown RBP6.15□□□□□ -1.42
UPF1-206ENST00000598471 KRTAP10-7P60409 375 aaPredicted RBP6.14□□□□□ -1.43
UPF1-206ENST00000598471 KRTAP10-12P60413 245 aa6.11□□□□□ -1.43
UPF1-206ENST00000598471 KRTAP6-3Q3LI67 103 aa6.05□□□□□ -1.44
UPF1-206ENST00000598471 SYNE2Q8WXH0 6885 aaKnown RBP6.03□□□□□ -1.44
UPF1-206ENST00000598471 KTN1-AS1Q86SY8 53 aa6.01□□□□□ -1.45
UPF1-206ENST00000598471 KRTAP23-1A1A580 65 aa5.99□□□□□ -1.45
UPF1-206ENST00000598471 LCE3AQ5TA76 89 aa5.96□□□□□ -1.46
UPF1-206ENST00000598471 PP632Q6XCG6 107 aa5.96□□□□□ -1.46
UPF1-206ENST00000598471 KMT2DO14686 5537 aa5.93□□□□□ -1.46
UPF1-206ENST00000598471 KRTAP4-8A0A0G2JLE6 195 aa5.92□□□□□ -1.46
UPF1-206ENST00000598471 KRTAP4-8Q9BYQ9 185 aa5.92□□□□□ -1.46
UPF1-206ENST00000598471 KRTAP8-1Q8IUC2 63 aa5.91□□□□□ -1.46
UPF1-206ENST00000598471 PRAC1Q96KF2 57 aa5.9□□□□□ -1.46
UPF1-206ENST00000598471 MUC12Q9UKN1 5478 aa5.85□□□□□ -1.47
UPF1-206ENST00000598471 KRTAP5-9P26371 169 aa5.85□□□□□ -1.47
UPF1-206ENST00000598471 KRTAP19-5Q3LI72 72 aa5.77□□□□□ -1.49
UPF1-206ENST00000598471 KRTAP12-3P60328 96 aa5.75□□□□□ -1.49
UPF1-206ENST00000598471 SPRR2FQ96RM1 72 aa5.74□□□□□ -1.49
UPF1-206ENST00000598471 KRTAP19-7Q3SYF9 63 aa5.72□□□□□ -1.49
UPF1-206ENST00000598471 SVIPQ8NHG7 77 aa5.7□□□□□ -1.5
UPF1-206ENST00000598471 NEBP20929 6669 aa5.69□□□□□ -1.5
UPF1-206ENST00000598471 MDN1Q9NU22 5596 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms