RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 C5orf47Q569G3 176 aa5.28□□□□□ -1.56
LIG1-211ENST00000596457 KRTAP19-1Q8IUB9 90 aa5.28□□□□□ -1.56
LIG1-211ENST00000596457 OCR1Q9BZK8 76 aa5.28□□□□□ -1.56
LIG1-211ENST00000596457 KRTAP20-1Q3LI63 56 aa5.26□□□□□ -1.57
LIG1-211ENST00000596457 KLKP1Q107X0 134 aa5.24□□□□□ -1.57
LIG1-211ENST00000596457 LCA10Q71F78 164 aa5.24□□□□□ -1.57
LIG1-211ENST00000596457 KRTAP6-3Q3LI67 103 aa5.23□□□□□ -1.57
LIG1-211ENST00000596457 KRTAP9-3Q9BYQ3 159 aa5.22□□□□□ -1.57
LIG1-211ENST00000596457 IMUPQ9GZP8 106 aa5.22□□□□□ -1.57
LIG1-211ENST00000596457 CSAG1Q6PB30 78 aa5.21□□□□□ -1.58
LIG1-211ENST00000596457 LOC100996750A0A140TA64 210 aa5.19□□□□□ -1.58
LIG1-211ENST00000596457 FAM236AA0A1B0GUQ0 79 aa5.19□□□□□ -1.58
LIG1-211ENST00000596457 FAM236BA0A1B0GV22 79 aa5.19□□□□□ -1.58
LIG1-211ENST00000596457 KRTAP4-6Q9BYQ5 205 aa5.19□□□□□ -1.58
LIG1-211ENST00000596457 H3BPC8 53 aa5.18□□□□□ -1.58
LIG1-211ENST00000596457 TRAV7A0A075B6U4 112 aa5.13□□□□□ -1.59
LIG1-211ENST00000596457 A8MUN3 132 aa5.13□□□□□ -1.59
LIG1-211ENST00000596457 SMIM20Q8N5G0 67 aa5.13□□□□□ -1.59
LIG1-211ENST00000596457 NDUFC1O43677 76 aa5.12□□□□□ -1.59
LIG1-211ENST00000596457 SNURFQ9Y675 71 aa5.06□□□□□ -1.6
LIG1-211ENST00000596457 KRTAP19-6Q3LI70 58 aa5.05□□□□□ -1.6
LIG1-211ENST00000596457 DMAC1Q96GE9 116 aa5.04□□□□□ -1.6
LIG1-211ENST00000596457 MUC12Q9UKN1 5478 aa5.04□□□□□ -1.6
LIG1-211ENST00000596457 ADM2Q7Z4H4 148 aa5.01□□□□□ -1.61
LIG1-211ENST00000596457 C20orf197Q8N268 126 aa5.01□□□□□ -1.61
LIG1-211ENST00000596457 SERP2Q8N6R1 65 aa5.01□□□□□ -1.61
LIG1-211ENST00000596457 ACYP2P14621 99 aa5□□□□□ -1.61
LIG1-211ENST00000596457 GPR98Q8WXG9 6306 aa4.99□□□□□ -1.61
LIG1-211ENST00000596457 H0YAA0 97 aa4.97□□□□□ -1.61
LIG1-211ENST00000596457 Q5VV11 94 aa4.95□□□□□ -1.62
LIG1-211ENST00000596457 SPRR2GQ9BYE4 73 aa4.95□□□□□ -1.62
LIG1-211ENST00000596457 CHKB-CPT1BH3BT56 60 aa4.94□□□□□ -1.62
LIG1-211ENST00000596457 CRIPTQ9P021 101 aa4.94□□□□□ -1.62
LIG1-211ENST00000596457 KMT2DO14686 5537 aa4.92□□□□□ -1.62
LIG1-211ENST00000596457 COX7CP15954 63 aa4.91□□□□□ -1.62
LIG1-211ENST00000596457 SPTSSBQ8NFR3 76 aa4.91□□□□□ -1.62
LIG1-211ENST00000596457 MT1BP07438 61 aa4.9□□□□□ -1.63
LIG1-211ENST00000596457 KRTAP19-8Q3LI54 63 aa4.9□□□□□ -1.63
LIG1-211ENST00000596457 P0C880 135 aa4.89□□□□□ -1.63
LIG1-211ENST00000596457 SPANXA2-OT1Q8N9U9 137 aa4.89□□□□□ -1.63
LIG1-211ENST00000596457 KRTAP2-3P0C7H8 128 aa4.88□□□□□ -1.63
LIG1-211ENST00000596457 KRTAP2-4Q9BYR9 128 aa4.88□□□□□ -1.63
LIG1-211ENST00000596457 SVIPQ8NHG7 77 aa4.86□□□□□ -1.63
LIG1-211ENST00000596457 R4GN34 69 aa4.85□□□□□ -1.63
LIG1-211ENST00000596457 M0QZ58 72 aa4.84□□□□□ -1.63
LIG1-211ENST00000596457 ANAPC13Q9BS18 74 aa4.84□□□□□ -1.63
LIG1-211ENST00000596457 A6NN06 94 aa4.83□□□□□ -1.64
LIG1-211ENST00000596457 CYSTM1Q9H1C7 97 aa4.81□□□□□ -1.64
LIG1-211ENST00000596457 COA5Q86WW8 74 aa4.8□□□□□ -1.64
LIG1-211ENST00000596457 LINC01554Q52M75 96 aa4.79□□□□□ -1.64
LIG1-211ENST00000596457 H7BZZ5 65 aa4.78□□□□□ -1.64
LIG1-211ENST00000596457 MDN1Q9NU22 5596 aa4.78□□□□□ -1.64
LIG1-211ENST00000596457 PLAC4Q8WY50 150 aa4.77□□□□□ -1.65
LIG1-211ENST00000596457 KRTAP10-5P60370 271 aa4.76□□□□□ -1.65
LIG1-211ENST00000596457 CCDC179H3BU77 68 aa4.74□□□□□ -1.65
LIG1-211ENST00000596457 SEC61GP60059 68 aa4.68□□□□□ -1.66
LIG1-211ENST00000596457 KRTAP2-2Q9BYT5 123 aa4.67□□□□□ -1.66
LIG1-211ENST00000596457 KRTAP2-1Q9BYU5 128 aa4.67□□□□□ -1.66
LIG1-211ENST00000596457 SERP1Q9Y6X1 66 aa4.67□□□□□ -1.66
LIG1-211ENST00000596457 KRTAP4-8Q9BYQ9 185 aa4.66□□□□□ -1.66
LIG1-211ENST00000596457 PRO2289Q9P1D8 64 aa4.66□□□□□ -1.66
LIG1-211ENST00000596457 KRTAP5-9P26371 169 aa4.64□□□□□ -1.67
LIG1-211ENST00000596457 MT1XP80297 61 aa4.64□□□□□ -1.67
LIG1-211ENST00000596457 KRTAP13-4Q3LI77 160 aa4.62□□□□□ -1.67
LIG1-211ENST00000596457 ATP5EP56381 51 aaPredicted RBP4.59□□□□□ -1.67
LIG1-211ENST00000596457 A0A1B0GU33 70 aa4.57□□□□□ -1.68
LIG1-211ENST00000596457 SPATA8Q6RVD6 105 aa4.57□□□□□ -1.68
LIG1-211ENST00000596457 A0A0D9SG42 100 aa4.56□□□□□ -1.68
LIG1-211ENST00000596457 A0A1B0GU69 56 aa4.56□□□□□ -1.68
LIG1-211ENST00000596457 TMEM258P61165 79 aa4.53□□□□□ -1.68
LIG1-211ENST00000596457 SPRR2EP22531 72 aa4.51□□□□□ -1.69
LIG1-211ENST00000596457 SPRR2BP35325 72 aa4.51□□□□□ -1.69
LIG1-211ENST00000596457 SPRR2AP35326 72 aa4.51□□□□□ -1.69
LIG1-211ENST00000596457 CAMK2N1Q7Z7J9 78 aa4.51□□□□□ -1.69
LIG1-211ENST00000596457 SPINT4Q6UDR6 99 aa4.49□□□□□ -1.69
LIG1-211ENST00000596457 PRR15LQ9BU68 103 aa4.47□□□□□ -1.69
LIG1-211ENST00000596457 KRTAP12-2P59991 146 aa4.46□□□□□ -1.7
LIG1-211ENST00000596457 KRTAP10-7P60409 375 aaPredicted RBP4.46□□□□□ -1.7
LIG1-211ENST00000596457 SMIM26A0A096LP01 95 aa4.44□□□□□ -1.7
LIG1-211ENST00000596457 KRTAP8-1Q8IUC2 63 aa4.44□□□□□ -1.7
LIG1-211ENST00000596457 LINC01558Q9Y6Z2 57 aa4.44□□□□□ -1.7
LIG1-211ENST00000596457 LCE3BQ5TA77 95 aa4.43□□□□□ -1.7
LIG1-211ENST00000596457 KRTAP4-8A0A0G2JLE6 195 aa4.42□□□□□ -1.7
LIG1-211ENST00000596457 A8MU10 97 aa4.42□□□□□ -1.7
LIG1-211ENST00000596457 KRTAP12-1P59990 96 aa4.41□□□□□ -1.7
LIG1-211ENST00000596457 SPRR2FQ96RM1 72 aa4.41□□□□□ -1.7
LIG1-211ENST00000596457 KRTAP10-12P60413 245 aa4.39□□□□□ -1.71
LIG1-211ENST00000596457 SPRR2DP22532 72 aa4.38□□□□□ -1.71
LIG1-211ENST00000596457 KRTAP9-9Q9BYP9 154 aa4.35□□□□□ -1.71
LIG1-211ENST00000596457 KRTAP9-4Q9BYQ2 154 aa4.35□□□□□ -1.71
LIG1-211ENST00000596457 KRTAP4-12Q9BQ66 201 aa4.34□□□□□ -1.71
LIG1-211ENST00000596457 UQCR11O14957 56 aa4.31□□□□□ -1.72
LIG1-211ENST00000596457 LCE1AQ5T7P2 110 aa4.31□□□□□ -1.72
LIG1-211ENST00000596457 PCP4P48539 62 aa4.29□□□□□ -1.72
LIG1-211ENST00000596457 PSPHP1O15172 72 aa4.27□□□□□ -1.73
LIG1-211ENST00000596457 V9GYY9 64 aa4.27□□□□□ -1.73
LIG1-211ENST00000596457 KRTAP4-9Q9BYQ8 210 aa4.25□□□□□ -1.73
LIG1-211ENST00000596457 MIR22HGQ0VDD5 57 aa4.24□□□□□ -1.73
LIG1-211ENST00000596457 Q1T7F1 81 aa4.24□□□□□ -1.73
LIG1-211ENST00000596457 DSTQ03001 7570 aaKnown RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms