RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 FAM236AA0A1B0GUQ0 79 aa6.71□□□□□ -1.34
VRK3-206ENST00000594090 FAM236BA0A1B0GV22 79 aa6.71□□□□□ -1.34
VRK3-206ENST00000594090 A8MUN3 132 aa6.7□□□□□ -1.34
VRK3-206ENST00000594090 USH2AO75445 5202 aa6.69□□□□□ -1.34
VRK3-206ENST00000594090 KRTAP19-1Q8IUB9 90 aa6.67□□□□□ -1.34
VRK3-206ENST00000594090 NDUFC1O43677 76 aa6.64□□□□□ -1.35
VRK3-206ENST00000594090 SSPOA2VEC9 5147 aa6.63□□□□□ -1.35
VRK3-206ENST00000594090 SMIM20Q8N5G0 67 aa6.62□□□□□ -1.35
VRK3-206ENST00000594090 TRAV7A0A075B6U4 112 aa6.61□□□□□ -1.35
VRK3-206ENST00000594090 KRTAP19-6Q3LI70 58 aa6.59□□□□□ -1.35
VRK3-206ENST00000594090 DMAC1Q96GE9 116 aa6.58□□□□□ -1.36
VRK3-206ENST00000594090 SPRR2GQ9BYE4 73 aa6.57□□□□□ -1.36
VRK3-206ENST00000594090 H0YAA0 97 aa6.55□□□□□ -1.36
VRK3-206ENST00000594090 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.52□□□□□ -1.37
VRK3-206ENST00000594090 KRTAP19-8Q3LI54 63 aa6.5□□□□□ -1.37
VRK3-206ENST00000594090 CRIPTQ9P021 101 aa6.5□□□□□ -1.37
VRK3-206ENST00000594090 MT1BP07438 61 aa6.5□□□□□ -1.37
VRK3-206ENST00000594090 Q5VV11 94 aa6.49□□□□□ -1.37
VRK3-206ENST00000594090 ADM2Q7Z4H4 148 aa6.48□□□□□ -1.37
VRK3-206ENST00000594090 SNURFQ9Y675 71 aa6.47□□□□□ -1.37
VRK3-206ENST00000594090 FCGBPQ9Y6R7 5405 aaPredicted RBP6.46□□□□□ -1.38
VRK3-206ENST00000594090 SERP2Q8N6R1 65 aa6.45□□□□□ -1.38
VRK3-206ENST00000594090 ACYP2P14621 99 aa6.43□□□□□ -1.38
VRK3-206ENST00000594090 C20orf197Q8N268 126 aa6.42□□□□□ -1.38
VRK3-206ENST00000594090 KRTAP9-7A8MTY7 169 aa6.39□□□□□ -1.39
VRK3-206ENST00000594090 P0C880 135 aa6.36□□□□□ -1.39
VRK3-206ENST00000594090 SPANXA2-OT1Q8N9U9 137 aa6.36□□□□□ -1.39
VRK3-206ENST00000594090 A6NN06 94 aa6.33□□□□□ -1.4
VRK3-206ENST00000594090 KRTAP3-2Q9BYR7 98 aa6.33□□□□□ -1.4
VRK3-206ENST00000594090 SPTSSBQ8NFR3 76 aa6.33□□□□□ -1.4
VRK3-206ENST00000594090 CHKB-CPT1BH3BT56 60 aa6.32□□□□□ -1.4
VRK3-206ENST00000594090 PCP4P48539 62 aa6.32□□□□□ -1.4
VRK3-206ENST00000594090 ANAPC13Q9BS18 74 aa6.32□□□□□ -1.4
VRK3-206ENST00000594090 KRTAP10-5P60370 271 aa6.31□□□□□ -1.4
VRK3-206ENST00000594090 COX7CP15954 63 aa6.3□□□□□ -1.4
VRK3-206ENST00000594090 R4GN34 69 aa6.3□□□□□ -1.4
VRK3-206ENST00000594090 M0QZ58 72 aa6.26□□□□□ -1.41
VRK3-206ENST00000594090 MACF1Q9UPN3 7388 aaKnown RBP6.25□□□□□ -1.41
VRK3-206ENST00000594090 CCDC179H3BU77 68 aa6.22□□□□□ -1.41
VRK3-206ENST00000594090 CYSTM1Q9H1C7 97 aa6.19□□□□□ -1.42
VRK3-206ENST00000594090 COA5Q86WW8 74 aa6.18□□□□□ -1.42
VRK3-206ENST00000594090 PLAC4Q8WY50 150 aa6.18□□□□□ -1.42
VRK3-206ENST00000594090 H7BZZ5 65 aa6.17□□□□□ -1.42
VRK3-206ENST00000594090 LINC01554Q52M75 96 aa6.16□□□□□ -1.42
VRK3-206ENST00000594090 KRTAP6-3Q3LI67 103 aa6.14□□□□□ -1.43
VRK3-206ENST00000594090 MT1XP80297 61 aa6.13□□□□□ -1.43
VRK3-206ENST00000594090 PRO2289Q9P1D8 64 aa6.12□□□□□ -1.43
VRK3-206ENST00000594090 SYNE2Q8WXH0 6885 aaKnown RBP6.03□□□□□ -1.44
VRK3-206ENST00000594090 KRTAP13-4Q3LI77 160 aa6.01□□□□□ -1.45
VRK3-206ENST00000594090 TMEM258P61165 79 aa5.99□□□□□ -1.45
VRK3-206ENST00000594090 SEC61GP60059 68 aa5.99□□□□□ -1.45
VRK3-206ENST00000594090 SERP1Q9Y6X1 66 aa5.98□□□□□ -1.45
VRK3-206ENST00000594090 KRTAP5-9P26371 169 aa5.94□□□□□ -1.46
VRK3-206ENST00000594090 ATP5EP56381 51 aaPredicted RBP5.94□□□□□ -1.46
VRK3-206ENST00000594090 KRTAP12-2P59991 146 aa5.94□□□□□ -1.46
VRK3-206ENST00000594090 A0A1B0GU33 70 aa5.87□□□□□ -1.47
VRK3-206ENST00000594090 A0A1B0GU69 56 aa5.85□□□□□ -1.47
VRK3-206ENST00000594090 KRTAP10-7P60409 375 aaPredicted RBP5.85□□□□□ -1.47
VRK3-206ENST00000594090 SPATA8Q6RVD6 105 aa5.85□□□□□ -1.47
VRK3-206ENST00000594090 A0A0D9SG42 100 aa5.83□□□□□ -1.48
VRK3-206ENST00000594090 KRTAP8-1Q8IUC2 63 aa5.82□□□□□ -1.48
VRK3-206ENST00000594090 CAMK2N1Q7Z7J9 78 aa5.82□□□□□ -1.48
VRK3-206ENST00000594090 KRTAP10-12P60413 245 aa5.81□□□□□ -1.48
VRK3-206ENST00000594090 KRTAP4-8A0A0G2JLE6 195 aa5.8□□□□□ -1.48
VRK3-206ENST00000594090 RPS28P62857 69 aaKnown RBP5.8□□□□□ -1.48
VRK3-206ENST00000594090 SPRR2FQ96RM1 72 aa5.8□□□□□ -1.48
VRK3-206ENST00000594090 KRTAP4-8Q9BYQ9 185 aa5.8□□□□□ -1.48
VRK3-206ENST00000594090 KMT2DO14686 5537 aa5.79□□□□□ -1.48
VRK3-206ENST00000594090 MUC12Q9UKN1 5478 aa5.76□□□□□ -1.49
VRK3-206ENST00000594090 KRTAP12-1P59990 96 aa5.74□□□□□ -1.49
VRK3-206ENST00000594090 SPINT4Q6UDR6 99 aa5.74□□□□□ -1.49
VRK3-206ENST00000594090 H3BS24 57 aa5.72□□□□□ -1.49
VRK3-206ENST00000594090 PRR15LQ9BU68 103 aa5.72□□□□□ -1.49
VRK3-206ENST00000594090 SMIM26A0A096LP01 95 aa5.71□□□□□ -1.5
VRK3-206ENST00000594090 LINC01558Q9Y6Z2 57 aa5.71□□□□□ -1.5
VRK3-206ENST00000594090 SPRR2EP22531 72 aa5.68□□□□□ -1.5
VRK3-206ENST00000594090 SPRR2BP35325 72 aa5.68□□□□□ -1.5
VRK3-206ENST00000594090 SPRR2AP35326 72 aa5.68□□□□□ -1.5
VRK3-206ENST00000594090 A8MU10 97 aa5.67□□□□□ -1.5
VRK3-206ENST00000594090 A0A0A0MQY5 61 aa5.65□□□□□ -1.5
VRK3-206ENST00000594090 NEBP20929 6669 aa5.65□□□□□ -1.5
VRK3-206ENST00000594090 V9GYY9 64 aa5.65□□□□□ -1.51
VRK3-206ENST00000594090 LCE1AQ5T7P2 110 aa5.63□□□□□ -1.51
VRK3-206ENST00000594090 KRTAP20-1Q3LI63 56 aa5.62□□□□□ -1.51
VRK3-206ENST00000594090 MDN1Q9NU22 5596 aa5.58□□□□□ -1.52
VRK3-206ENST00000594090 Q1T7F1 81 aa5.57□□□□□ -1.52
VRK3-206ENST00000594090 UQCR11O14957 56 aa5.53□□□□□ -1.52
VRK3-206ENST00000594090 KRTAP2-3P0C7H8 128 aa5.5□□□□□ -1.53
VRK3-206ENST00000594090 KRTAP2-4Q9BYR9 128 aa5.5□□□□□ -1.53
VRK3-206ENST00000594090 SPRR2DP22532 72 aa5.48□□□□□ -1.53
VRK3-206ENST00000594090 KRTAP19-7Q3SYF9 63 aa5.47□□□□□ -1.53
VRK3-206ENST00000594090 C10orf95Q9H7T3 257 aa5.46□□□□□ -1.54
VRK3-206ENST00000594090 MIR22HGQ0VDD5 57 aa5.42□□□□□ -1.54
VRK3-206ENST00000594090 PSPHP1O15172 72 aa5.41□□□□□ -1.54
VRK3-206ENST00000594090 MT1EP04732 61 aa5.41□□□□□ -1.54
VRK3-206ENST00000594090 TNP1P09430 55 aa5.41□□□□□ -1.54
VRK3-206ENST00000594090 KRTAP19-5Q3LI72 72 aa5.37□□□□□ -1.55
VRK3-206ENST00000594090 LCE3AQ5TA76 89 aa5.34□□□□□ -1.55
VRK3-206ENST00000594090 KRTAP19-3Q7Z4W3 81 aa5.33□□□□□ -1.56
VRK3-206ENST00000594090 KRTAP2-2Q9BYT5 123 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 1572.6 ms