RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 GPR98Q8WXG9 6306 aa1.98□□□□□ -2.09
VMP1-216ENST00000592790 KRTAP10-1P60331 282 aa1.98□□□□□ -2.09
VMP1-216ENST00000592790 A8MUU9 505 aa1.97□□□□□ -2.09
VMP1-216ENST00000592790 Q6ZSA8 131 aa1.97□□□□□ -2.09
VMP1-216ENST00000592790 KRTAP10-2P60368 255 aa1.97□□□□□ -2.09
VMP1-216ENST00000592790 C20orf166-AS1Q96NR2 134 aa1.97□□□□□ -2.09
VMP1-216ENST00000592790 S4R3F8 94 aa1.97□□□□□ -2.09
VMP1-216ENST00000592790 KRTAP3-1Q9BYR8 98 aa1.95□□□□□ -2.1
VMP1-216ENST00000592790 APOBP04114 4563 aaKnown RBP1.94□□□□□ -2.1
VMP1-216ENST00000592790 A0A0D9SG42 100 aa1.94□□□□□ -2.1
VMP1-216ENST00000592790 KRTAP1-4P0C5Y4 121 aa1.94□□□□□ -2.1
VMP1-216ENST00000592790 LUZP6Q538Z0 58 aa1.94□□□□□ -2.1
VMP1-216ENST00000592790 KMT2CQ8NEZ4 4911 aaKnown RBP1.94□□□□□ -2.1
VMP1-216ENST00000592790 HIVEP1P15822 2718 aa1.94□□□□□ -2.1
VMP1-216ENST00000592790 VWFP04275 2813 aa1.93□□□□□ -2.1
VMP1-216ENST00000592790 SMR3BP02814 79 aaPredicted RBP1.93□□□□□ -2.1
VMP1-216ENST00000592790 H0YAA0 97 aa1.92□□□□□ -2.1
VMP1-216ENST00000592790 P0C880 135 aa1.92□□□□□ -2.1
VMP1-216ENST00000592790 M0QZ58 72 aa1.91□□□□□ -2.1
VMP1-216ENST00000592790 FLGP20930 4061 aaPredicted RBP1.91□□□□□ -2.1
VMP1-216ENST00000592790 KRTAP9-9Q9BYP9 154 aa1.9□□□□□ -2.1
VMP1-216ENST00000592790 KRTAP9-4Q9BYQ2 154 aa1.9□□□□□ -2.1
VMP1-216ENST00000592790 HERC2O95714 4834 aa1.9□□□□□ -2.11
VMP1-216ENST00000592790 NDUFAF8A1L188 74 aa1.87□□□□□ -2.11
VMP1-216ENST00000592790 R4GN34 69 aa1.87□□□□□ -2.11
VMP1-216ENST00000592790 KRTAP15-1Q3LI76 137 aa1.87□□□□□ -2.11
VMP1-216ENST00000592790 FAT1Q14517 4588 aa1.86□□□□□ -2.11
VMP1-216ENST00000592790 LRP1BQ9NZR2 4599 aa1.86□□□□□ -2.11
VMP1-216ENST00000592790 DYNC1H1Q14204 4646 aaKnown RBP1.86□□□□□ -2.11
VMP1-216ENST00000592790 TENM1Q9UKZ4 2725 aa1.85□□□□□ -2.11
VMP1-216ENST00000592790 BIRC6Q9NR09 4857 aa1.85□□□□□ -2.11
VMP1-216ENST00000592790 LPAP08519 4548 aa1.84□□□□□ -2.11
VMP1-216ENST00000592790 KRTAP4-8Q9BYQ9 185 aa1.84□□□□□ -2.11
VMP1-216ENST00000592790 EPPK1P58107 5090 aaKnown RBP1.84□□□□□ -2.11
VMP1-216ENST00000592790 KRTAP19-1Q8IUB9 90 aa1.84□□□□□ -2.11
VMP1-216ENST00000592790 CAMK2N1Q7Z7J9 78 aa1.84□□□□□ -2.12
VMP1-216ENST00000592790 PP632Q6XCG6 107 aa1.83□□□□□ -2.12
VMP1-216ENST00000592790 PKD1L1Q8TDX9 2849 aa1.83□□□□□ -2.12
VMP1-216ENST00000592790 LCE4AQ5TA78 99 aa1.82□□□□□ -2.12
VMP1-216ENST00000592790 PCLOQ9Y6V0 5065 aa1.82□□□□□ -2.12
VMP1-216ENST00000592790 XP32Q5T750 250 aa1.82□□□□□ -2.12
VMP1-216ENST00000592790 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.81□□□□□ -2.12
VMP1-216ENST00000592790 PLAC4Q8WY50 150 aa1.81□□□□□ -2.12
VMP1-216ENST00000592790 KRTAP4-12Q9BQ66 201 aa1.8□□□□□ -2.12
VMP1-216ENST00000592790 TGP01266 2768 aa1.8□□□□□ -2.12
VMP1-216ENST00000592790 TPRXLQ17RH7 258 aa1.79□□□□□ -2.12
VMP1-216ENST00000592790 KRTAP10-8P60410 259 aa1.79□□□□□ -2.12
VMP1-216ENST00000592790 TENM2Q9NT68 2774 aa1.78□□□□□ -2.12
VMP1-216ENST00000592790 A0A1B0GVY2 172 aa1.78□□□□□ -2.12
VMP1-216ENST00000592790 RYR1P21817 5038 aa1.77□□□□□ -2.13
VMP1-216ENST00000592790 KRTAP10-6P60371 365 aaPredicted RBP1.77□□□□□ -2.13
VMP1-216ENST00000592790 ABCA13Q86UQ4 5058 aa1.77□□□□□ -2.13
VMP1-216ENST00000592790 KRTAP9-6A0A140TA67 174 aa1.77□□□□□ -2.13
VMP1-216ENST00000592790 KRTAP9-7A8MTY7 169 aa1.77□□□□□ -2.13
VMP1-216ENST00000592790 C10orf95Q9H7T3 257 aa1.77□□□□□ -2.13
VMP1-216ENST00000592790 HERC1Q15751 4861 aa1.76□□□□□ -2.13
VMP1-216ENST00000592790 MEGF8Q7Z7M0 2845 aa1.76□□□□□ -2.13
VMP1-216ENST00000592790 KRTAP12-1P59990 96 aa1.76□□□□□ -2.13
VMP1-216ENST00000592790 KRTAP9-2Q9BYQ4 174 aa1.76□□□□□ -2.13
VMP1-216ENST00000592790 KRTAP12-2P59991 146 aa1.75□□□□□ -2.13
VMP1-216ENST00000592790 TNP1P09430 55 aa1.75□□□□□ -2.13
VMP1-216ENST00000592790 SRRM2Q9UQ35 2752 aaKnown RBP1.74□□□□□ -2.13
VMP1-216ENST00000592790 MUC17Q685J3 4493 aa1.74□□□□□ -2.13
VMP1-216ENST00000592790 SPRR5A0A1B0GTR4 108 aa1.73□□□□□ -2.13
VMP1-216ENST00000592790 KRTAP13-4Q3LI77 160 aa1.73□□□□□ -2.13
VMP1-216ENST00000592790 LRP1Q07954 4544 aaKnown RBP1.73□□□□□ -2.13
VMP1-216ENST00000592790 KIAA1109Q2LD37 5005 aa1.72□□□□□ -2.13
VMP1-216ENST00000592790 KRTAP10-4P60372 401 aaPredicted RBP1.72□□□□□ -2.13
VMP1-216ENST00000592790 KRTAP4-8A0A0G2JLE6 195 aa1.7□□□□□ -2.14
VMP1-216ENST00000592790 KRTAP4-7Q9BYR0 210 aa1.7□□□□□ -2.14
VMP1-216ENST00000592790 KRTAP4-2Q9BYR5 136 aa1.69□□□□□ -2.14
VMP1-216ENST00000592790 KRTAP9-3Q9BYQ3 159 aa1.67□□□□□ -2.14
VMP1-216ENST00000592790 PRO2289Q9P1D8 64 aa1.67□□□□□ -2.14
VMP1-216ENST00000592790 KRTAP5-3Q6L8H2 238 aa1.66□□□□□ -2.14
VMP1-216ENST00000592790 MT1HL1P0DM35 61 aa1.64□□□□□ -2.15
VMP1-216ENST00000592790 MACF1Q9UPN3 7388 aaKnown RBP1.63□□□□□ -2.15
VMP1-216ENST00000592790 LRP2P98164 4655 aa1.61□□□□□ -2.15
VMP1-216ENST00000592790 HMCN2Q8NDA2 5059 aa1.61□□□□□ -2.15
VMP1-216ENST00000592790 KRTAP9-8Q9BYQ0 159 aa1.6□□□□□ -2.15
VMP1-216ENST00000592790 INE1O15225 51 aa1.6□□□□□ -2.15
VMP1-216ENST00000592790 CRCT1Q9UGL9 99 aa1.6□□□□□ -2.15
VMP1-216ENST00000592790 KRTAP4-9Q9BYQ8 210 aa1.59□□□□□ -2.15
VMP1-216ENST00000592790 KRTAP19-4Q3LI73 84 aa1.59□□□□□ -2.15
VMP1-216ENST00000592790 LCE3BQ5TA77 95 aa1.58□□□□□ -2.16
VMP1-216ENST00000592790 OBSCNQ5VST9 7968 aa1.57□□□□□ -2.16
VMP1-216ENST00000592790 LCE5AQ5TCM9 118 aa1.56□□□□□ -2.16
VMP1-216ENST00000592790 KRTAP10-10P60014 251 aa1.54□□□□□ -2.16
VMP1-216ENST00000592790 FAT4Q6V0I7 4981 aa1.54□□□□□ -2.16
VMP1-216ENST00000592790 MUC2Q02817 5179 aa1.53□□□□□ -2.16
VMP1-216ENST00000592790 KRTAP4-5Q9BYR2 181 aa1.53□□□□□ -2.16
VMP1-216ENST00000592790 UBR4Q5T4S7 5183 aa1.51□□□□□ -2.17
VMP1-216ENST00000592790 LCE1DQ5T752 114 aa1.49□□□□□ -2.17
VMP1-216ENST00000592790 SPRR2GQ9BYE4 73 aa1.48□□□□□ -2.17
VMP1-216ENST00000592790 KRTAP10-12P60413 245 aa1.47□□□□□ -2.17
VMP1-216ENST00000592790 LCE3AQ5TA76 89 aa1.46□□□□□ -2.18
VMP1-216ENST00000592790 KRTAP12-3P60328 96 aa1.46□□□□□ -2.18
VMP1-216ENST00000592790 KRTAP4-1Q9BYQ7 146 aa1.45□□□□□ -2.18
VMP1-216ENST00000592790 KRTAP10-7P60409 375 aaPredicted RBP1.45□□□□□ -2.18
VMP1-216ENST00000592790 LCE3CQ5T5A8 94 aa1.44□□□□□ -2.18
VMP1-216ENST00000592790 KRTAP4-11Q9BYQ6 195 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms