RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 XP32Q5T750 250 aa1.61□□□□□ -2.15
SMCHD1-203ENST00000577880 DNAH9Q9NYC9 4486 aa1.61□□□□□ -2.15
SMCHD1-203ENST00000577880 KRTAP11-1Q8IUC1 163 aa1.61□□□□□ -2.15
SMCHD1-203ENST00000577880 SSPOA2VEC9 5147 aa1.6□□□□□ -2.15
SMCHD1-203ENST00000577880 KRTAP13-1Q8IUC0 172 aa1.6□□□□□ -2.15
SMCHD1-203ENST00000577880 LINC01558Q9Y6Z2 57 aa1.6□□□□□ -2.15
SMCHD1-203ENST00000577880 NOTCH2NLQ7Z3S9 236 aa1.6□□□□□ -2.15
SMCHD1-203ENST00000577880 PKD1L1Q8TDX9 2849 aa1.59□□□□□ -2.15
SMCHD1-203ENST00000577880 COL7A1Q02388 2944 aa1.59□□□□□ -2.15
SMCHD1-203ENST00000577880 ROMO1P60602 79 aa1.59□□□□□ -2.16
SMCHD1-203ENST00000577880 HRNRQ86YZ3 2850 aaPredicted RBP1.59□□□□□ -2.16
SMCHD1-203ENST00000577880 KRTAP6-3Q3LI67 103 aa1.58□□□□□ -2.16
SMCHD1-203ENST00000577880 KRTAP1-4P0C5Y4 121 aa1.58□□□□□ -2.16
SMCHD1-203ENST00000577880 PKD1P98161 4303 aa1.58□□□□□ -2.16
SMCHD1-203ENST00000577880 ZANQ9Y493 2812 aa1.57□□□□□ -2.16
SMCHD1-203ENST00000577880 A0A0A0MQY5 61 aa1.57□□□□□ -2.16
SMCHD1-203ENST00000577880 SPATA8Q6RVD6 105 aa1.57□□□□□ -2.16
SMCHD1-203ENST00000577880 PKHD1L1Q86WI1 4243 aa1.57□□□□□ -2.16
SMCHD1-203ENST00000577880 ABCA13Q86UQ4 5058 aa1.57□□□□□ -2.16
SMCHD1-203ENST00000577880 KTN1-AS1Q86SY8 53 aa1.57□□□□□ -2.16
SMCHD1-203ENST00000577880 KRTAP13-3Q3SY46 172 aa1.57□□□□□ -2.16
SMCHD1-203ENST00000577880 KRTAP7-1Q8IUC3 87 aa1.57□□□□□ -2.16
SMCHD1-203ENST00000577880 VPS13BQ7Z7G8 4022 aa1.56□□□□□ -2.16
SMCHD1-203ENST00000577880 ALMS1Q8TCU4 4167 aa1.55□□□□□ -2.16
SMCHD1-203ENST00000577880 KRTAP2-3P0C7H8 128 aa1.54□□□□□ -2.16
SMCHD1-203ENST00000577880 KRTAP2-4Q9BYR9 128 aa1.54□□□□□ -2.16
SMCHD1-203ENST00000577880 SRRM2Q9UQ35 2752 aaKnown RBP1.54□□□□□ -2.16
SMCHD1-203ENST00000577880 Q5VV11 94 aa1.54□□□□□ -2.16
SMCHD1-203ENST00000577880 MXRA5Q9NR99 2828 aa1.53□□□□□ -2.16
SMCHD1-203ENST00000577880 MUC5BQ9HC84 5762 aaPredicted RBP1.53□□□□□ -2.16
SMCHD1-203ENST00000577880 DNAH17Q9UFH2 4485 aa1.52□□□□□ -2.17
SMCHD1-203ENST00000577880 VPS13DQ5THJ4 4388 aa1.52□□□□□ -2.17
SMCHD1-203ENST00000577880 NEBP20929 6669 aa1.52□□□□□ -2.17
SMCHD1-203ENST00000577880 KRTAP4-12Q9BQ66 201 aa1.51□□□□□ -2.17
SMCHD1-203ENST00000577880 DNAH2Q9P225 4427 aa1.51□□□□□ -2.17
SMCHD1-203ENST00000577880 A6NN06 94 aa1.51□□□□□ -2.17
SMCHD1-203ENST00000577880 KRTAP4-5Q9BYR2 181 aa1.51□□□□□ -2.17
SMCHD1-203ENST00000577880 PP632Q6XCG6 107 aa1.51□□□□□ -2.17
SMCHD1-203ENST00000577880 STARD9Q9P2P6 4700 aa1.5□□□□□ -2.17
SMCHD1-203ENST00000577880 A8MU10 97 aa1.5□□□□□ -2.17
SMCHD1-203ENST00000577880 KRTAP9-9Q9BYP9 154 aa1.49□□□□□ -2.17
SMCHD1-203ENST00000577880 KRTAP9-4Q9BYQ2 154 aa1.49□□□□□ -2.17
SMCHD1-203ENST00000577880 TGP01266 2768 aa1.48□□□□□ -2.17
SMCHD1-203ENST00000577880 KRTAP4-8Q9BYQ9 185 aa1.48□□□□□ -2.17
SMCHD1-203ENST00000577880 KRTAP25-1Q3LHN0 102 aa1.48□□□□□ -2.17
SMCHD1-203ENST00000577880 FAT4Q6V0I7 4981 aa1.48□□□□□ -2.17
SMCHD1-203ENST00000577880 DNAH10Q8IVF4 4471 aa1.48□□□□□ -2.17
SMCHD1-203ENST00000577880 P0C880 135 aa1.48□□□□□ -2.17
SMCHD1-203ENST00000577880 C10orf95Q9H7T3 257 aa1.47□□□□□ -2.17
SMCHD1-203ENST00000577880 HSPG2P98160 4391 aa1.47□□□□□ -2.17
SMCHD1-203ENST00000577880 PRAC1Q96KF2 57 aa1.47□□□□□ -2.17
SMCHD1-203ENST00000577880 DYNC1H1Q14204 4646 aaKnown RBP1.47□□□□□ -2.17
SMCHD1-203ENST00000577880 UBR4Q5T4S7 5183 aa1.46□□□□□ -2.17
SMCHD1-203ENST00000577880 DNAH11Q96DT5 4516 aa1.46□□□□□ -2.18
SMCHD1-203ENST00000577880 AHNAKQ09666 5890 aaKnown RBP1.46□□□□□ -2.18
SMCHD1-203ENST00000577880 KRTAP19-1Q8IUB9 90 aa1.46□□□□□ -2.18
SMCHD1-203ENST00000577880 KRTAP5-7Q6L8G8 165 aa1.46□□□□□ -2.18
SMCHD1-203ENST00000577880 PLECQ15149 4684 aaKnown RBP1.45□□□□□ -2.18
SMCHD1-203ENST00000577880 KRTAP16-1A8MUX0 517 aa1.44□□□□□ -2.18
SMCHD1-203ENST00000577880 KRTAP2-2Q9BYT5 123 aa1.43□□□□□ -2.18
SMCHD1-203ENST00000577880 KRTAP2-1Q9BYU5 128 aa1.43□□□□□ -2.18
SMCHD1-203ENST00000577880 TNXBP22105 4242 aa1.43□□□□□ -2.18
SMCHD1-203ENST00000577880 MT1HL1P0DM35 61 aa1.42□□□□□ -2.18
SMCHD1-203ENST00000577880 KRTAP9-8Q9BYQ0 159 aa1.42□□□□□ -2.18
SMCHD1-203ENST00000577880 HMCN2Q8NDA2 5059 aa1.41□□□□□ -2.18
SMCHD1-203ENST00000577880 H0YAA0 97 aa1.4□□□□□ -2.18
SMCHD1-203ENST00000577880 CYSTM1Q9H1C7 97 aa1.4□□□□□ -2.19
SMCHD1-203ENST00000577880 MUC2Q02817 5179 aa1.4□□□□□ -2.19
SMCHD1-203ENST00000577880 KRTAP5-3Q6L8H2 238 aa1.39□□□□□ -2.19
SMCHD1-203ENST00000577880 MYCBP2O75592 4640 aa1.38□□□□□ -2.19
SMCHD1-203ENST00000577880 APOBP04114 4563 aaKnown RBP1.38□□□□□ -2.19
SMCHD1-203ENST00000577880 KRTAP4-2Q9BYR5 136 aa1.37□□□□□ -2.19
SMCHD1-203ENST00000577880 KRTAP15-1Q3LI76 137 aa1.36□□□□□ -2.19
SMCHD1-203ENST00000577880 KRTAP13-4Q3LI77 160 aa1.36□□□□□ -2.19
SMCHD1-203ENST00000577880 FAT1Q14517 4588 aa1.34□□□□□ -2.19
SMCHD1-203ENST00000577880 DNAH8Q96JB1 4490 aa1.34□□□□□ -2.19
SMCHD1-203ENST00000577880 KRTAP8-1Q8IUC2 63 aa1.34□□□□□ -2.19
SMCHD1-203ENST00000577880 DNAH5Q8TE73 4624 aa1.34□□□□□ -2.19
SMCHD1-203ENST00000577880 KRTAP12-2P59991 146 aa1.34□□□□□ -2.2
SMCHD1-203ENST00000577880 NDUFAF8A1L188 74 aa1.33□□□□□ -2.2
SMCHD1-203ENST00000577880 KRTAP10-12P60413 245 aa1.33□□□□□ -2.2
SMCHD1-203ENST00000577880 KRTAP10-4P60372 401 aaPredicted RBP1.32□□□□□ -2.2
SMCHD1-203ENST00000577880 KRTAP4-8A0A0G2JLE6 195 aa1.3□□□□□ -2.2
SMCHD1-203ENST00000577880 KRTAP12-1P59990 96 aa1.3□□□□□ -2.2
SMCHD1-203ENST00000577880 KRTAP5-2Q701N4 177 aa1.29□□□□□ -2.2
SMCHD1-203ENST00000577880 H3BS24 57 aa1.29□□□□□ -2.2
SMCHD1-203ENST00000577880 KRTAP5-10Q6L8G5 202 aa1.28□□□□□ -2.2
SMCHD1-203ENST00000577880 KRTAP3-1Q9BYR8 98 aa1.28□□□□□ -2.2
SMCHD1-203ENST00000577880 LCE4AQ5TA78 99 aa1.28□□□□□ -2.2
SMCHD1-203ENST00000577880 KRTAP10-6P60371 365 aaPredicted RBP1.27□□□□□ -2.21
SMCHD1-203ENST00000577880 SPRR2FQ96RM1 72 aa1.26□□□□□ -2.21
SMCHD1-203ENST00000577880 KRTAP4-7Q9BYR0 210 aa1.26□□□□□ -2.21
SMCHD1-203ENST00000577880 KRTAP12-3P60328 96 aa1.26□□□□□ -2.21
SMCHD1-203ENST00000577880 MT1HP80294 61 aa1.25□□□□□ -2.21
SMCHD1-203ENST00000577880 SYNE2Q8WXH0 6885 aaKnown RBP1.25□□□□□ -2.21
SMCHD1-203ENST00000577880 KRTAP10-7P60409 375 aaPredicted RBP1.25□□□□□ -2.21
SMCHD1-203ENST00000577880 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.24□□□□□ -2.21
SMCHD1-203ENST00000577880 MUC17Q685J3 4493 aa1.24□□□□□ -2.21
SMCHD1-203ENST00000577880 HMCN1Q96RW7 5635 aa1.24□□□□□ -2.21
SMCHD1-203ENST00000577880 KRTAP5-9P26371 169 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms