RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 LCE2CQ5TA81 110 aa11.96□□□□□ -0.49
ATPAF1-213ENST00000574428 H1FX-AS1Q4G0G2 97 aa11.95□□□□□ -0.5
ATPAF1-213ENST00000574428 V9GYY9 64 aa11.91□□□□□ -0.5
ATPAF1-213ENST00000574428 FAT4Q6V0I7 4981 aa11.84□□□□□ -0.51
ATPAF1-213ENST00000574428 PSPHP1O15172 72 aa11.82□□□□□ -0.52
ATPAF1-213ENST00000574428 LINC01558Q9Y6Z2 57 aa11.8□□□□□ -0.52
ATPAF1-213ENST00000574428 S4R3F8 94 aa11.8□□□□□ -0.52
ATPAF1-213ENST00000574428 FLGP20930 4061 aaPredicted RBP11.79□□□□□ -0.52
ATPAF1-213ENST00000574428 LCA10Q71F78 164 aa11.77□□□□□ -0.53
ATPAF1-213ENST00000574428 PRR15LQ9BU68 103 aa11.76□□□□□ -0.53
ATPAF1-213ENST00000574428 MT1HP80294 61 aa11.74□□□□□ -0.53
ATPAF1-213ENST00000574428 Q5VV11 94 aa11.71□□□□□ -0.54
ATPAF1-213ENST00000574428 KRTAP3-3Q9BYR6 98 aa11.69□□□□□ -0.54
ATPAF1-213ENST00000574428 SPTSSBQ8NFR3 76 aa11.63□□□□□ -0.55
ATPAF1-213ENST00000574428 M0R2T5 61 aa11.62□□□□□ -0.55
ATPAF1-213ENST00000574428 CSAG1Q6PB30 78 aa11.56□□□□□ -0.56
ATPAF1-213ENST00000574428 A0A1B0GU69 56 aa11.55□□□□□ -0.56
ATPAF1-213ENST00000574428 LCE2AQ5TA79 106 aaPredicted RBP11.53□□□□□ -0.56
ATPAF1-213ENST00000574428 BRK1Q8WUW1 75 aa11.49□□□□□ -0.57
ATPAF1-213ENST00000574428 A6NED7 52 aa11.43□□□□□ -0.58
ATPAF1-213ENST00000574428 SEC61GP60059 68 aa11.39□□□□□ -0.59
ATPAF1-213ENST00000574428 KRTAP10-6P60371 365 aaPredicted RBP11.36□□□□□ -0.59
ATPAF1-213ENST00000574428 PRO0628Q9UI54 55 aa11.32□□□□□ -0.6
ATPAF1-213ENST00000574428 A8MU10 97 aa11.31□□□□□ -0.6
ATPAF1-213ENST00000574428 LORP23490 312 aaPredicted RBP11.31□□□□□ -0.6
ATPAF1-213ENST00000574428 KRTAP9-8Q9BYQ0 159 aa11.26□□□□□ -0.61
ATPAF1-213ENST00000574428 CDC42SE1Q9NRR8 79 aa11.26□□□□□ -0.61
ATPAF1-213ENST00000574428 ADM2Q7Z4H4 148 aa11.24□□□□□ -0.61
ATPAF1-213ENST00000574428 H0YAA0 97 aa11.23□□□□□ -0.61
ATPAF1-213ENST00000574428 UQCR11O14957 56 aa11.22□□□□□ -0.61
ATPAF1-213ENST00000574428 MT2AP02795 61 aa11.21□□□□□ -0.62
ATPAF1-213ENST00000574428 KRTAP3-2Q9BYR7 98 aa11.18□□□□□ -0.62
ATPAF1-213ENST00000574428 MT1FP04733 61 aa11.13□□□□□ -0.63
ATPAF1-213ENST00000574428 P0C880 135 aa11.13□□□□□ -0.63
ATPAF1-213ENST00000574428 MIR22HGQ0VDD5 57 aa11.13□□□□□ -0.63
ATPAF1-213ENST00000574428 SPATA8Q6RVD6 105 aa11.13□□□□□ -0.63
ATPAF1-213ENST00000574428 A0A1B0GU33 70 aa11.13□□□□□ -0.63
ATPAF1-213ENST00000574428 KRTAP10-10P60014 251 aa11.1□□□□□ -0.63
ATPAF1-213ENST00000574428 KRTAP13-4Q3LI77 160 aa10.89□□□□□ -0.67
ATPAF1-213ENST00000574428 CRIPTQ9P021 101 aa10.88□□□□□ -0.67
ATPAF1-213ENST00000574428 SVIPQ8NHG7 77 aa10.85□□□□□ -0.67
ATPAF1-213ENST00000574428 KRTAP9-3Q9BYQ3 159 aa10.85□□□□□ -0.67
ATPAF1-213ENST00000574428 R4GN34 69 aa10.85□□□□□ -0.67
ATPAF1-213ENST00000574428 PMAIP1Q13794 54 aa10.84□□□□□ -0.67
ATPAF1-213ENST00000574428 M0QZ58 72 aa10.83□□□□□ -0.68
ATPAF1-213ENST00000574428 KRTAP19-1Q8IUB9 90 aa10.79□□□□□ -0.68
ATPAF1-213ENST00000574428 A6NN06 94 aa10.78□□□□□ -0.68
ATPAF1-213ENST00000574428 SPRR2GQ9BYE4 73 aa10.77□□□□□ -0.69
ATPAF1-213ENST00000574428 A0A0D9SG42 100 aa10.69□□□□□ -0.7
ATPAF1-213ENST00000574428 LINC01554Q52M75 96 aa10.67□□□□□ -0.7
ATPAF1-213ENST00000574428 LCE2BO14633 110 aa10.64□□□□□ -0.71
ATPAF1-213ENST00000574428 LCE2DQ5TA82 110 aaPredicted RBP10.59□□□□□ -0.71
ATPAF1-213ENST00000574428 K7ERS5 55 aa10.54□□□□□ -0.72
ATPAF1-213ENST00000574428 KRTAP19-8Q3LI54 63 aa10.54□□□□□ -0.72
ATPAF1-213ENST00000574428 KTN1-AS1Q86SY8 53 aa10.47□□□□□ -0.73
ATPAF1-213ENST00000574428 KRTAP12-1P59990 96 aa10.46□□□□□ -0.74
ATPAF1-213ENST00000574428 KRTAP12-2P59991 146 aa10.46□□□□□ -0.74
ATPAF1-213ENST00000574428 MT1BP07438 61 aa10.45□□□□□ -0.74
ATPAF1-213ENST00000574428 USH2AO75445 5202 aa10.43□□□□□ -0.74
ATPAF1-213ENST00000574428 SPINT4Q6UDR6 99 aa10.4□□□□□ -0.74
ATPAF1-213ENST00000574428 KRTAP9-2Q9BYQ4 174 aa10.4□□□□□ -0.74
ATPAF1-213ENST00000574428 PLAC4Q8WY50 150 aa10.33□□□□□ -0.76
ATPAF1-213ENST00000574428 FSIP2Q5CZC0 6907 aa10.24□□□□□ -0.77
ATPAF1-213ENST00000574428 PRAC1Q96KF2 57 aa10.19□□□□□ -0.78
ATPAF1-213ENST00000574428 ROMO1P60602 79 aa10.19□□□□□ -0.78
ATPAF1-213ENST00000574428 SSPOA2VEC9 5147 aa10.14□□□□□ -0.79
ATPAF1-213ENST00000574428 CAMK2N1Q7Z7J9 78 aa10.14□□□□□ -0.79
ATPAF1-213ENST00000574428 KRTAP19-6Q3LI70 58 aa10.04□□□□□ -0.8
ATPAF1-213ENST00000574428 MT1XP80297 61 aa10.03□□□□□ -0.8
ATPAF1-213ENST00000574428 KRTAP10-5P60370 271 aa10.01□□□□□ -0.81
ATPAF1-213ENST00000574428 CRCT1Q9UGL9 99 aa9.97□□□□□ -0.81
ATPAF1-213ENST00000574428 PRO2289Q9P1D8 64 aa9.94□□□□□ -0.82
ATPAF1-213ENST00000574428 C10orf95Q9H7T3 257 aa9.89□□□□□ -0.83
ATPAF1-213ENST00000574428 KRTAP25-1Q3LHN0 102 aa9.86□□□□□ -0.83
ATPAF1-213ENST00000574428 FCGBPQ9Y6R7 5405 aaPredicted RBP9.79□□□□□ -0.84
ATPAF1-213ENST00000574428 KRTAP9-6A0A140TA67 174 aa9.72□□□□□ -0.85
ATPAF1-213ENST00000574428 KRTAP10-7P60409 375 aaPredicted RBP9.63□□□□□ -0.87
ATPAF1-213ENST00000574428 TNP1P09430 55 aa9.55□□□□□ -0.88
ATPAF1-213ENST00000574428 KRTAP10-12P60413 245 aa9.5□□□□□ -0.89
ATPAF1-213ENST00000574428 KRTAP4-8A0A0G2JLE6 195 aa9.35□□□□□ -0.91
ATPAF1-213ENST00000574428 KRTAP4-8Q9BYQ9 185 aa9.35□□□□□ -0.91
ATPAF1-213ENST00000574428 MACF1Q9UPN3 7388 aaKnown RBP9.34□□□□□ -0.91
ATPAF1-213ENST00000574428 KMT2DO14686 5537 aa9.34□□□□□ -0.91
ATPAF1-213ENST00000574428 PP632Q6XCG6 107 aa9.31□□□□□ -0.92
ATPAF1-213ENST00000574428 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.25□□□□□ -0.93
ATPAF1-213ENST00000574428 LCE3AQ5TA76 89 aa9.25□□□□□ -0.93
ATPAF1-213ENST00000574428 KRTAP23-1A1A580 65 aa9.24□□□□□ -0.93
ATPAF1-213ENST00000574428 KRTAP8-1Q8IUC2 63 aa9.17□□□□□ -0.94
ATPAF1-213ENST00000574428 SYNE2Q8WXH0 6885 aaKnown RBP9.12□□□□□ -0.95
ATPAF1-213ENST00000574428 KRTAP19-5Q3LI72 72 aa8.99□□□□□ -0.97
ATPAF1-213ENST00000574428 KRTAP19-7Q3SYF9 63 aa8.96□□□□□ -0.98
ATPAF1-213ENST00000574428 SPRR2FQ96RM1 72 aa8.92□□□□□ -0.98
ATPAF1-213ENST00000574428 KRTAP6-3Q3LI67 103 aa8.91□□□□□ -0.98
ATPAF1-213ENST00000574428 KRTAP5-9P26371 169 aa8.89□□□□□ -0.99
ATPAF1-213ENST00000574428 KRTAP12-3P60328 96 aa8.88□□□□□ -0.99
ATPAF1-213ENST00000574428 KRTAP9-7A8MTY7 169 aa8.85□□□□□ -0.99
ATPAF1-213ENST00000574428 MT1EP04732 61 aa8.82□□□□□ -1
ATPAF1-213ENST00000574428 KRTAP15-1Q3LI76 137 aa8.79□□□□□ -1
ATPAF1-213ENST00000574428 MUC12Q9UKN1 5478 aa8.75□□□□□ -1.01
ATPAF1-213ENST00000574428 MDN1Q9NU22 5596 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms