RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 LOC101927531A0A1B0GV80 90 aa4.56□□□□□ -1.68
VPS35-211ENST00000569950 C5orf47Q569G3 176 aa4.56□□□□□ -1.68
VPS35-211ENST00000569950 KRTAP10-6P60371 365 aaPredicted RBP4.55□□□□□ -1.68
VPS35-211ENST00000569950 KLKP1Q107X0 134 aa4.54□□□□□ -1.68
VPS35-211ENST00000569950 FAM236DA0A1B0GTK5 79 aa4.53□□□□□ -1.68
VPS35-211ENST00000569950 ATOX1O00244 68 aa4.53□□□□□ -1.68
VPS35-211ENST00000569950 FAM236CP0DP71 79 aa4.53□□□□□ -1.68
VPS35-211ENST00000569950 LINC00208Q96KT6 92 aa4.53□□□□□ -1.68
VPS35-211ENST00000569950 TRAV7A0A075B6U4 112 aa4.52□□□□□ -1.69
VPS35-211ENST00000569950 C1orf64Q8NEQ6 169 aa4.52□□□□□ -1.69
VPS35-211ENST00000569950 H1FX-AS1Q4G0G2 97 aa4.51□□□□□ -1.69
VPS35-211ENST00000569950 KRTAP9-8Q9BYQ0 159 aa4.51□□□□□ -1.69
VPS35-211ENST00000569950 H3BPC8 53 aa4.49□□□□□ -1.69
VPS35-211ENST00000569950 MP68P56378 58 aa4.48□□□□□ -1.69
VPS35-211ENST00000569950 LCE5AQ5TCM9 118 aa4.48□□□□□ -1.69
VPS35-211ENST00000569950 SMIM20Q8N5G0 67 aa4.48□□□□□ -1.69
VPS35-211ENST00000569950 M0R2T5 61 aa4.46□□□□□ -1.7
VPS35-211ENST00000569950 SERP2Q8N6R1 65 aa4.46□□□□□ -1.7
VPS35-211ENST00000569950 MT2AP02795 61 aa4.45□□□□□ -1.7
VPS35-211ENST00000569950 SEC61GP60059 68 aa4.45□□□□□ -1.7
VPS35-211ENST00000569950 KRTAP9-3Q9BYQ3 159 aa4.45□□□□□ -1.7
VPS35-211ENST00000569950 KRTAP5-3Q6L8H2 238 aa4.44□□□□□ -1.7
VPS35-211ENST00000569950 MT1FP04733 61 aa4.42□□□□□ -1.7
VPS35-211ENST00000569950 LCA10Q71F78 164 aa4.42□□□□□ -1.7
VPS35-211ENST00000569950 SNURFQ9Y675 71 aa4.41□□□□□ -1.7
VPS35-211ENST00000569950 CYSTM1Q9H1C7 97 aa4.4□□□□□ -1.71
VPS35-211ENST00000569950 COX7CP15954 63 aa4.39□□□□□ -1.71
VPS35-211ENST00000569950 C20orf197Q8N268 126 aa4.39□□□□□ -1.71
VPS35-211ENST00000569950 DMAC1Q96GE9 116 aa4.39□□□□□ -1.71
VPS35-211ENST00000569950 S4R3F8 94 aa4.39□□□□□ -1.71
VPS35-211ENST00000569950 A8MUN3 132 aa4.37□□□□□ -1.71
VPS35-211ENST00000569950 V9GYY9 64 aa4.33□□□□□ -1.72
VPS35-211ENST00000569950 ANAPC13Q9BS18 74 aa4.32□□□□□ -1.72
VPS35-211ENST00000569950 H7BZZ5 65 aa4.31□□□□□ -1.72
VPS35-211ENST00000569950 CSAG1Q6PB30 78 aa4.31□□□□□ -1.72
VPS35-211ENST00000569950 SPANXA2-OT1Q8N9U9 137 aa4.31□□□□□ -1.72
VPS35-211ENST00000569950 CCDC179H3BU77 68 aa4.3□□□□□ -1.72
VPS35-211ENST00000569950 KRTAP10-10P60014 251 aa4.3□□□□□ -1.72
VPS35-211ENST00000569950 USH2AO75445 5202 aa4.27□□□□□ -1.73
VPS35-211ENST00000569950 NDUFC1O43677 76 aa4.26□□□□□ -1.73
VPS35-211ENST00000569950 H0YAA0 97 aa4.24□□□□□ -1.73
VPS35-211ENST00000569950 ACYP2P14621 99 aa4.24□□□□□ -1.73
VPS35-211ENST00000569950 PRO0628Q9UI54 55 aa4.22□□□□□ -1.73
VPS35-211ENST00000569950 FSIP2Q5CZC0 6907 aa4.21□□□□□ -1.73
VPS35-211ENST00000569950 SSPOA2VEC9 5147 aa4.21□□□□□ -1.73
VPS35-211ENST00000569950 RPS28P62857 69 aaKnown RBP4.21□□□□□ -1.74
VPS35-211ENST00000569950 SPRR2GQ9BYE4 73 aa4.19□□□□□ -1.74
VPS35-211ENST00000569950 P0C880 135 aa4.18□□□□□ -1.74
VPS35-211ENST00000569950 COA5Q86WW8 74 aa4.18□□□□□ -1.74
VPS35-211ENST00000569950 ADM2Q7Z4H4 148 aa4.16□□□□□ -1.74
VPS35-211ENST00000569950 KRTAP19-8Q3LI54 63 aa4.15□□□□□ -1.75
VPS35-211ENST00000569950 MT1BP07438 61 aa4.14□□□□□ -1.75
VPS35-211ENST00000569950 CRCT1Q9UGL9 99 aa4.14□□□□□ -1.75
VPS35-211ENST00000569950 CHKB-CPT1BH3BT56 60 aa4.11□□□□□ -1.75
VPS35-211ENST00000569950 CRIPTQ9P021 101 aa4.11□□□□□ -1.75
VPS35-211ENST00000569950 TMEM258P61165 79 aa4.09□□□□□ -1.75
VPS35-211ENST00000569950 SPTSSBQ8NFR3 76 aa4.09□□□□□ -1.75
VPS35-211ENST00000569950 ATP5EP56381 51 aaPredicted RBP4.08□□□□□ -1.76
VPS35-211ENST00000569950 KRTAP19-6Q3LI70 58 aa4.07□□□□□ -1.76
VPS35-211ENST00000569950 FCGBPQ9Y6R7 5405 aaPredicted RBP4.05□□□□□ -1.76
VPS35-211ENST00000569950 KRTAP13-4Q3LI77 160 aa4.04□□□□□ -1.76
VPS35-211ENST00000569950 PMAIP1Q13794 54 aa4.02□□□□□ -1.77
VPS35-211ENST00000569950 Q5VV11 94 aa4.02□□□□□ -1.77
VPS35-211ENST00000569950 M0QZ58 72 aa4.01□□□□□ -1.77
VPS35-211ENST00000569950 R4GN34 69 aa4□□□□□ -1.77
VPS35-211ENST00000569950 KRTAP23-1A1A580 65 aa3.97□□□□□ -1.77
VPS35-211ENST00000569950 SERP1Q9Y6X1 66 aa3.96□□□□□ -1.78
VPS35-211ENST00000569950 KRTAP10-5P60370 271 aa3.95□□□□□ -1.78
VPS35-211ENST00000569950 A0A0A0MQY5 61 aa3.94□□□□□ -1.78
VPS35-211ENST00000569950 MT1XP80297 61 aa3.93□□□□□ -1.78
VPS35-211ENST00000569950 LINC01558Q9Y6Z2 57 aa3.93□□□□□ -1.78
VPS35-211ENST00000569950 LINC01554Q52M75 96 aa3.91□□□□□ -1.78
VPS35-211ENST00000569950 A0A1B0GU69 56 aa3.9□□□□□ -1.79
VPS35-211ENST00000569950 A6NN06 94 aa3.9□□□□□ -1.79
VPS35-211ENST00000569950 SPATA8Q6RVD6 105 aa3.9□□□□□ -1.79
VPS35-211ENST00000569950 A0A1B0GU33 70 aa3.89□□□□□ -1.79
VPS35-211ENST00000569950 SMIM26A0A096LP01 95 aa3.87□□□□□ -1.79
VPS35-211ENST00000569950 PLAC4Q8WY50 150 aa3.85□□□□□ -1.79
VPS35-211ENST00000569950 BRK1Q8WUW1 75 aa3.84□□□□□ -1.79
VPS35-211ENST00000569950 KRTAP12-1P59990 96 aa3.83□□□□□ -1.8
VPS35-211ENST00000569950 Q1T7F1 81 aa3.83□□□□□ -1.8
VPS35-211ENST00000569950 MACF1Q9UPN3 7388 aaKnown RBP3.82□□□□□ -1.8
VPS35-211ENST00000569950 A8MU10 97 aa3.82□□□□□ -1.8
VPS35-211ENST00000569950 A0A0D9SG42 100 aa3.81□□□□□ -1.8
VPS35-211ENST00000569950 KRTAP12-2P59991 146 aa3.8□□□□□ -1.8
VPS35-211ENST00000569950 PRR15LQ9BU68 103 aa3.8□□□□□ -1.8
VPS35-211ENST00000569950 KTN1-AS1Q86SY8 53 aa3.78□□□□□ -1.8
VPS35-211ENST00000569950 PSPHP1O15172 72 aa3.76□□□□□ -1.81
VPS35-211ENST00000569950 PRO2289Q9P1D8 64 aa3.76□□□□□ -1.81
VPS35-211ENST00000569950 KRTAP10-7P60409 375 aaPredicted RBP3.75□□□□□ -1.81
VPS35-211ENST00000569950 SYNE2Q8WXH0 6885 aaKnown RBP3.75□□□□□ -1.81
VPS35-211ENST00000569950 UQCR11O14957 56 aa3.73□□□□□ -1.81
VPS35-211ENST00000569950 KRTAP10-12P60413 245 aa3.72□□□□□ -1.81
VPS35-211ENST00000569950 KRTAP15-1Q3LI76 137 aa3.72□□□□□ -1.81
VPS35-211ENST00000569950 KMT2DO14686 5537 aa3.71□□□□□ -1.82
VPS35-211ENST00000569950 SPINT4Q6UDR6 99 aa3.71□□□□□ -1.82
VPS35-211ENST00000569950 MIR22HGQ0VDD5 57 aa3.68□□□□□ -1.82
VPS35-211ENST00000569950 KRTAP6-3Q3LI67 103 aa3.68□□□□□ -1.82
VPS35-211ENST00000569950 CAMK2N1Q7Z7J9 78 aa3.68□□□□□ -1.82
VPS35-211ENST00000569950 KRTAP5-9P26371 169 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms