RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 LOC101927531A0A1B0GV80 90 aa6.5□□□□□ -1.37
CLN3-235ENST00000568497 KLKP1Q107X0 134 aa6.5□□□□□ -1.37
CLN3-235ENST00000568497 S4R3F8 94 aa6.5□□□□□ -1.37
CLN3-235ENST00000568497 LCA10Q71F78 164 aa6.49□□□□□ -1.37
CLN3-235ENST00000568497 LINC00208Q96KT6 92 aa6.49□□□□□ -1.37
CLN3-235ENST00000568497 K7ERU9 68 aa6.46□□□□□ -1.38
CLN3-235ENST00000568497 KRTAP3-3Q9BYR6 98 aa6.44□□□□□ -1.38
CLN3-235ENST00000568497 SCGB1A1P11684 91 aa6.42□□□□□ -1.38
CLN3-235ENST00000568497 MP68P56378 58 aa6.41□□□□□ -1.38
CLN3-235ENST00000568497 IMUPQ9GZP8 106 aa6.41□□□□□ -1.38
CLN3-235ENST00000568497 KRTAP2-3P0C7H8 128 aa6.4□□□□□ -1.38
CLN3-235ENST00000568497 KRTAP2-4Q9BYR9 128 aa6.4□□□□□ -1.38
CLN3-235ENST00000568497 FAM236AA0A1B0GUQ0 79 aa6.37□□□□□ -1.39
CLN3-235ENST00000568497 FAM236BA0A1B0GV22 79 aa6.37□□□□□ -1.39
CLN3-235ENST00000568497 CSAG1Q6PB30 78 aa6.37□□□□□ -1.39
CLN3-235ENST00000568497 H3BPC8 53 aa6.36□□□□□ -1.39
CLN3-235ENST00000568497 A6NN06 94 aa6.35□□□□□ -1.39
CLN3-235ENST00000568497 KMT2DO14686 5537 aa6.35□□□□□ -1.39
CLN3-235ENST00000568497 MDN1Q9NU22 5596 aa6.34□□□□□ -1.39
CLN3-235ENST00000568497 KRTAP5-9P26371 169 aa6.33□□□□□ -1.4
CLN3-235ENST00000568497 A8MUN3 132 aa6.32□□□□□ -1.4
CLN3-235ENST00000568497 SMIM20Q8N5G0 67 aa6.31□□□□□ -1.4
CLN3-235ENST00000568497 TRAV7A0A075B6U4 112 aa6.25□□□□□ -1.41
CLN3-235ENST00000568497 SNURFQ9Y675 71 aa6.25□□□□□ -1.41
CLN3-235ENST00000568497 NDUFC1O43677 76 aa6.23□□□□□ -1.41
CLN3-235ENST00000568497 ADM2Q7Z4H4 148 aa6.19□□□□□ -1.42
CLN3-235ENST00000568497 DMAC1Q96GE9 116 aa6.19□□□□□ -1.42
CLN3-235ENST00000568497 MT1BP07438 61 aa6.18□□□□□ -1.42
CLN3-235ENST00000568497 KRTAP2-2Q9BYT5 123 aa6.15□□□□□ -1.42
CLN3-235ENST00000568497 KRTAP2-1Q9BYU5 128 aa6.15□□□□□ -1.42
CLN3-235ENST00000568497 SPRR2EP22531 72 aa6.14□□□□□ -1.43
CLN3-235ENST00000568497 SPRR2BP35325 72 aa6.14□□□□□ -1.43
CLN3-235ENST00000568497 SPRR2AP35326 72 aa6.14□□□□□ -1.43
CLN3-235ENST00000568497 C20orf197Q8N268 126 aa6.14□□□□□ -1.43
CLN3-235ENST00000568497 SPRR2GQ9BYE4 73 aa6.14□□□□□ -1.43
CLN3-235ENST00000568497 H0YAA0 97 aa6.11□□□□□ -1.43
CLN3-235ENST00000568497 P0C880 135 aa6.11□□□□□ -1.43
CLN3-235ENST00000568497 CRIPTQ9P021 101 aa6.11□□□□□ -1.43
CLN3-235ENST00000568497 KRTAP10-5P60370 271 aa6.1□□□□□ -1.43
CLN3-235ENST00000568497 KRTAP19-8Q3LI54 63 aa6.1□□□□□ -1.43
CLN3-235ENST00000568497 SERP2Q8N6R1 65 aa6.1□□□□□ -1.43
CLN3-235ENST00000568497 Q5VV11 94 aa6.09□□□□□ -1.43
CLN3-235ENST00000568497 ACYP2P14621 99 aa6.08□□□□□ -1.44
CLN3-235ENST00000568497 SPRR2FQ96RM1 72 aa6.07□□□□□ -1.44
CLN3-235ENST00000568497 KRTAP3-2Q9BYR7 98 aa6.06□□□□□ -1.44
CLN3-235ENST00000568497 CYSTM1Q9H1C7 97 aa6.04□□□□□ -1.44
CLN3-235ENST00000568497 SPTSSBQ8NFR3 76 aa6.03□□□□□ -1.44
CLN3-235ENST00000568497 GPR98Q8WXG9 6306 aa6.01□□□□□ -1.45
CLN3-235ENST00000568497 SPANXA2-OT1Q8N9U9 137 aa5.99□□□□□ -1.45
CLN3-235ENST00000568497 CHKB-CPT1BH3BT56 60 aa5.98□□□□□ -1.45
CLN3-235ENST00000568497 COX7CP15954 63 aa5.97□□□□□ -1.45
CLN3-235ENST00000568497 M0QZ58 72 aa5.95□□□□□ -1.46
CLN3-235ENST00000568497 SPRR2DP22532 72 aa5.94□□□□□ -1.46
CLN3-235ENST00000568497 LINC01554Q52M75 96 aa5.93□□□□□ -1.46
CLN3-235ENST00000568497 R4GN34 69 aa5.92□□□□□ -1.46
CLN3-235ENST00000568497 LCE1AQ5T7P2 110 aa5.9□□□□□ -1.46
CLN3-235ENST00000568497 COA5Q86WW8 74 aa5.89□□□□□ -1.47
CLN3-235ENST00000568497 H7BZZ5 65 aa5.88□□□□□ -1.47
CLN3-235ENST00000568497 ANAPC13Q9BS18 74 aa5.87□□□□□ -1.47
CLN3-235ENST00000568497 CCDC179H3BU77 68 aa5.86□□□□□ -1.47
CLN3-235ENST00000568497 MT1XP80297 61 aa5.83□□□□□ -1.48
CLN3-235ENST00000568497 LCE3BQ5TA77 95 aa5.82□□□□□ -1.48
CLN3-235ENST00000568497 KRTAP8-1Q8IUC2 63 aa5.82□□□□□ -1.48
CLN3-235ENST00000568497 KRTAP13-4Q3LI77 160 aa5.81□□□□□ -1.48
CLN3-235ENST00000568497 PLAC4Q8WY50 150 aa5.81□□□□□ -1.48
CLN3-235ENST00000568497 SEC61GP60059 68 aa5.72□□□□□ -1.49
CLN3-235ENST00000568497 PRO2289Q9P1D8 64 aa5.72□□□□□ -1.49
CLN3-235ENST00000568497 SERP1Q9Y6X1 66 aa5.68□□□□□ -1.5
CLN3-235ENST00000568497 DSTQ03001 7570 aaKnown RBP5.67□□□□□ -1.5
CLN3-235ENST00000568497 SPATA8Q6RVD6 105 aa5.66□□□□□ -1.5
CLN3-235ENST00000568497 A0A0D9SG42 100 aa5.65□□□□□ -1.5
CLN3-235ENST00000568497 ATP5EP56381 51 aaPredicted RBP5.64□□□□□ -1.51
CLN3-235ENST00000568497 KRTAP10-7P60409 375 aaPredicted RBP5.62□□□□□ -1.51
CLN3-235ENST00000568497 KRTAP4-8A0A0G2JLE6 195 aa5.61□□□□□ -1.51
CLN3-235ENST00000568497 KRTAP4-9Q9BYQ8 210 aa5.61□□□□□ -1.51
CLN3-235ENST00000568497 KRTAP4-8Q9BYQ9 185 aa5.61□□□□□ -1.51
CLN3-235ENST00000568497 KRTAP12-2P59991 146 aa5.58□□□□□ -1.52
CLN3-235ENST00000568497 A0A1B0GU33 70 aa5.56□□□□□ -1.52
CLN3-235ENST00000568497 A0A1B0GU69 56 aa5.53□□□□□ -1.52
CLN3-235ENST00000568497 A8MU10 97 aa5.52□□□□□ -1.53
CLN3-235ENST00000568497 TMEM258P61165 79 aa5.51□□□□□ -1.53
CLN3-235ENST00000568497 SPINT4Q6UDR6 99 aa5.51□□□□□ -1.53
CLN3-235ENST00000568497 CAMK2N1Q7Z7J9 78 aa5.5□□□□□ -1.53
CLN3-235ENST00000568497 PRR15LQ9BU68 103 aa5.47□□□□□ -1.53
CLN3-235ENST00000568497 KRTAP12-1P59990 96 aa5.46□□□□□ -1.54
CLN3-235ENST00000568497 KRTAP10-12P60413 245 aa5.46□□□□□ -1.54
CLN3-235ENST00000568497 SMIM26A0A096LP01 95 aa5.42□□□□□ -1.54
CLN3-235ENST00000568497 LINC01558Q9Y6Z2 57 aa5.39□□□□□ -1.55
CLN3-235ENST00000568497 LCE1DQ5T752 114 aa5.37□□□□□ -1.55
CLN3-235ENST00000568497 AHNAK2Q8IVF2 5795 aa5.3□□□□□ -1.56
CLN3-235ENST00000568497 HMCN1Q96RW7 5635 aa5.3□□□□□ -1.56
CLN3-235ENST00000568497 KRTAP5-10Q6L8G5 202 aa5.29□□□□□ -1.56
CLN3-235ENST00000568497 MT4P47944 62 aa5.27□□□□□ -1.57
CLN3-235ENST00000568497 V9GYY9 64 aa5.27□□□□□ -1.57
CLN3-235ENST00000568497 UQCR11O14957 56 aa5.26□□□□□ -1.57
CLN3-235ENST00000568497 C10orf95Q9H7T3 257 aa5.25□□□□□ -1.57
CLN3-235ENST00000568497 PSPHP1O15172 72 aa5.24□□□□□ -1.57
CLN3-235ENST00000568497 PCP4P48539 62 aa5.23□□□□□ -1.57
CLN3-235ENST00000568497 KRTAP19-7Q3SYF9 63 aa5.2□□□□□ -1.58
CLN3-235ENST00000568497 LCE5AQ5TCM9 118 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms