RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 UQCRQO14949 82 aa7.24□□□□□ -1.25
CLN3-229ENST00000567963 SPRR2GQ9BYE4 73 aa7.24□□□□□ -1.25
CLN3-229ENST00000567963 SCGB1A1P11684 91 aa7.23□□□□□ -1.25
CLN3-229ENST00000567963 Q5VV11 94 aa7.23□□□□□ -1.25
CLN3-229ENST00000567963 TRAV22A0A0B4J277 110 aa7.22□□□□□ -1.25
CLN3-229ENST00000567963 ATOX1O00244 68 aa7.22□□□□□ -1.25
CLN3-229ENST00000567963 KRTAP19-8Q3LI54 63 aa7.22□□□□□ -1.25
CLN3-229ENST00000567963 SMIM20Q8N5G0 67 aa7.21□□□□□ -1.26
CLN3-229ENST00000567963 TRAV7A0A075B6U4 112 aa7.18□□□□□ -1.26
CLN3-229ENST00000567963 H0Y9P7 68 aa7.16□□□□□ -1.26
CLN3-229ENST00000567963 KLKP1Q107X0 134 aa7.15□□□□□ -1.27
CLN3-229ENST00000567963 KRTAP3-3Q9BYR6 98 aa7.14□□□□□ -1.27
CLN3-229ENST00000567963 KRTAP10-5P60370 271 aa7.13□□□□□ -1.27
CLN3-229ENST00000567963 MUC12Q9UKN1 5478 aa7.13□□□□□ -1.27
CLN3-229ENST00000567963 LOC101927531A0A1B0GV80 90 aa7.11□□□□□ -1.27
CLN3-229ENST00000567963 H3BPC8 53 aa7.11□□□□□ -1.27
CLN3-229ENST00000567963 SERP2Q8N6R1 65 aa7.11□□□□□ -1.27
CLN3-229ENST00000567963 MP68P56378 58 aa7.11□□□□□ -1.27
CLN3-229ENST00000567963 CYP4F30PQ9H0H9 118 aa7.1□□□□□ -1.27
CLN3-229ENST00000567963 NEBP20929 6669 aa7.1□□□□□ -1.27
CLN3-229ENST00000567963 LINC00208Q96KT6 92 aa7.07□□□□□ -1.28
CLN3-229ENST00000567963 COX7CP15954 63 aa7.04□□□□□ -1.28
CLN3-229ENST00000567963 CRIPTQ9P021 101 aa7.04□□□□□ -1.28
CLN3-229ENST00000567963 ANAPC13Q9BS18 74 aa7.03□□□□□ -1.28
CLN3-229ENST00000567963 KRTAP5-9P26371 169 aa7□□□□□ -1.29
CLN3-229ENST00000567963 C20orf197Q8N268 126 aa6.98□□□□□ -1.29
CLN3-229ENST00000567963 SNURFQ9Y675 71 aa6.95□□□□□ -1.3
CLN3-229ENST00000567963 KRTAP20-1Q3LI63 56 aa6.93□□□□□ -1.3
CLN3-229ENST00000567963 H0YAA0 97 aa6.92□□□□□ -1.3
CLN3-229ENST00000567963 KMT2DO14686 5537 aa6.92□□□□□ -1.3
CLN3-229ENST00000567963 NDUFC1O43677 76 aa6.92□□□□□ -1.3
CLN3-229ENST00000567963 MDN1Q9NU22 5596 aa6.9□□□□□ -1.3
CLN3-229ENST00000567963 CCDC179H3BU77 68 aa6.87□□□□□ -1.31
CLN3-229ENST00000567963 CYSTM1Q9H1C7 97 aa6.87□□□□□ -1.31
CLN3-229ENST00000567963 A8MUN3 132 aa6.84□□□□□ -1.31
CLN3-229ENST00000567963 H7BZZ5 65 aa6.84□□□□□ -1.31
CLN3-229ENST00000567963 SPANXA2-OT1Q8N9U9 137 aa6.84□□□□□ -1.31
CLN3-229ENST00000567963 ADM2Q7Z4H4 148 aa6.83□□□□□ -1.32
CLN3-229ENST00000567963 DMAC1Q96GE9 116 aa6.82□□□□□ -1.32
CLN3-229ENST00000567963 PRO2289Q9P1D8 64 aa6.79□□□□□ -1.32
CLN3-229ENST00000567963 MT1XP80297 61 aa6.76□□□□□ -1.33
CLN3-229ENST00000567963 SPRR2FQ96RM1 72 aa6.74□□□□□ -1.33
CLN3-229ENST00000567963 PCP4P48539 62 aa6.73□□□□□ -1.33
CLN3-229ENST00000567963 PLAC4Q8WY50 150 aa6.73□□□□□ -1.33
CLN3-229ENST00000567963 KRTAP2-3P0C7H8 128 aa6.72□□□□□ -1.33
CLN3-229ENST00000567963 KRTAP2-4Q9BYR9 128 aa6.72□□□□□ -1.33
CLN3-229ENST00000567963 ACYP2P14621 99 aa6.7□□□□□ -1.34
CLN3-229ENST00000567963 SPRR2EP22531 72 aa6.68□□□□□ -1.34
CLN3-229ENST00000567963 SPRR2BP35325 72 aa6.68□□□□□ -1.34
CLN3-229ENST00000567963 SPRR2AP35326 72 aa6.68□□□□□ -1.34
CLN3-229ENST00000567963 R4GN34 69 aa6.68□□□□□ -1.34
CLN3-229ENST00000567963 ATP5EP56381 51 aaPredicted RBP6.67□□□□□ -1.34
CLN3-229ENST00000567963 TMEM258P61165 79 aa6.67□□□□□ -1.34
CLN3-229ENST00000567963 P0C880 135 aa6.66□□□□□ -1.34
CLN3-229ENST00000567963 KRTAP8-1Q8IUC2 63 aa6.66□□□□□ -1.34
CLN3-229ENST00000567963 SVIPQ8NHG7 77 aa6.66□□□□□ -1.34
CLN3-229ENST00000567963 KRTAP12-2P59991 146 aa6.63□□□□□ -1.35
CLN3-229ENST00000567963 M0QZ58 72 aa6.6□□□□□ -1.35
CLN3-229ENST00000567963 COA5Q86WW8 74 aa6.6□□□□□ -1.35
CLN3-229ENST00000567963 LCE1AQ5T7P2 110 aa6.58□□□□□ -1.36
CLN3-229ENST00000567963 KRTAP3-2Q9BYR7 98 aa6.57□□□□□ -1.36
CLN3-229ENST00000567963 CHKB-CPT1BH3BT56 60 aa6.55□□□□□ -1.36
CLN3-229ENST00000567963 KRTAP4-8A0A0G2JLE6 195 aa6.54□□□□□ -1.36
CLN3-229ENST00000567963 KRTAP4-8Q9BYQ9 185 aa6.54□□□□□ -1.36
CLN3-229ENST00000567963 LINC01554Q52M75 96 aa6.53□□□□□ -1.36
CLN3-229ENST00000567963 SPTSSBQ8NFR3 76 aa6.52□□□□□ -1.37
CLN3-229ENST00000567963 KRTAP2-2Q9BYT5 123 aa6.5□□□□□ -1.37
CLN3-229ENST00000567963 KRTAP2-1Q9BYU5 128 aa6.5□□□□□ -1.37
CLN3-229ENST00000567963 SPRR2DP22532 72 aa6.46□□□□□ -1.38
CLN3-229ENST00000567963 KRTAP10-7P60409 375 aaPredicted RBP6.46□□□□□ -1.38
CLN3-229ENST00000567963 SERP1Q9Y6X1 66 aa6.45□□□□□ -1.38
CLN3-229ENST00000567963 KRTAP10-12P60413 245 aa6.42□□□□□ -1.38
CLN3-229ENST00000567963 RPS28P62857 69 aaKnown RBP6.32□□□□□ -1.4
CLN3-229ENST00000567963 LCE3BQ5TA77 95 aa6.31□□□□□ -1.4
CLN3-229ENST00000567963 LINC01558Q9Y6Z2 57 aa6.26□□□□□ -1.41
CLN3-229ENST00000567963 SEC61GP60059 68 aa6.24□□□□□ -1.41
CLN3-229ENST00000567963 SMIM26A0A096LP01 95 aa6.22□□□□□ -1.41
CLN3-229ENST00000567963 A0A1B0GU69 56 aa6.22□□□□□ -1.41
CLN3-229ENST00000567963 Q1T7F1 81 aa6.19□□□□□ -1.42
CLN3-229ENST00000567963 V9GYY9 64 aa6.19□□□□□ -1.42
CLN3-229ENST00000567963 PRR15LQ9BU68 103 aa6.16□□□□□ -1.42
CLN3-229ENST00000567963 KRTAP13-4Q3LI77 160 aa6.14□□□□□ -1.43
CLN3-229ENST00000567963 A0A1B0GU33 70 aa6.11□□□□□ -1.43
CLN3-229ENST00000567963 CAMK2N1Q7Z7J9 78 aa6.1□□□□□ -1.43
CLN3-229ENST00000567963 KRTAP19-7Q3SYF9 63 aa6.05□□□□□ -1.44
CLN3-229ENST00000567963 DSTQ03001 7570 aaKnown RBP6.04□□□□□ -1.44
CLN3-229ENST00000567963 PSPHP1O15172 72 aa6.04□□□□□ -1.44
CLN3-229ENST00000567963 LCE5AQ5TCM9 118 aa6.04□□□□□ -1.44
CLN3-229ENST00000567963 SPATA8Q6RVD6 105 aa6.02□□□□□ -1.45
CLN3-229ENST00000567963 UQCR11O14957 56 aa6□□□□□ -1.45
CLN3-229ENST00000567963 MT1EP04732 61 aa6□□□□□ -1.45
CLN3-229ENST00000567963 KRTAP19-3Q7Z4W3 81 aa5.99□□□□□ -1.45
CLN3-229ENST00000567963 A0A0D9SG42 100 aa5.92□□□□□ -1.46
CLN3-229ENST00000567963 KRTAP4-9Q9BYQ8 210 aa5.92□□□□□ -1.46
CLN3-229ENST00000567963 A8MU10 97 aa5.9□□□□□ -1.47
CLN3-229ENST00000567963 MIR22HGQ0VDD5 57 aa5.89□□□□□ -1.47
CLN3-229ENST00000567963 KRTAP12-1P59990 96 aa5.87□□□□□ -1.47
CLN3-229ENST00000567963 A6NED7 52 aa5.86□□□□□ -1.47
CLN3-229ENST00000567963 SPINT4Q6UDR6 99 aa5.85□□□□□ -1.47
CLN3-229ENST00000567963 KRTAP19-5Q3LI72 72 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms