RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 FLGP20930 4061 aaPredicted RBP15.07■□□□□ 0
CTCF-203ENST00000566078 LCA10Q71F78 164 aa15.05■□□□□ -0
CTCF-203ENST00000566078 LCE2CQ5TA81 110 aa15.04■□□□□ -0
CTCF-203ENST00000566078 FAT4Q6V0I7 4981 aa14.96□□□□□ -0.01
CTCF-203ENST00000566078 RPS28P62857 69 aaKnown RBP14.95□□□□□ -0.02
CTCF-203ENST00000566078 KRTAP3-3Q9BYR6 98 aa14.94□□□□□ -0.02
CTCF-203ENST00000566078 SPTSSBQ8NFR3 76 aa14.88□□□□□ -0.03
CTCF-203ENST00000566078 MT1HP80294 61 aa14.78□□□□□ -0.04
CTCF-203ENST00000566078 CSAG1Q6PB30 78 aa14.77□□□□□ -0.04
CTCF-203ENST00000566078 SMIM26A0A096LP01 95 aa14.71□□□□□ -0.05
CTCF-203ENST00000566078 M0R2T5 61 aa14.65□□□□□ -0.06
CTCF-203ENST00000566078 LINC01558Q9Y6Z2 57 aa14.52□□□□□ -0.09
CTCF-203ENST00000566078 Q1T7F1 81 aa14.5□□□□□ -0.09
CTCF-203ENST00000566078 V9GYY9 64 aa14.48□□□□□ -0.09
CTCF-203ENST00000566078 A0A1B0GU69 56 aa14.41□□□□□ -0.1
CTCF-203ENST00000566078 SEC61GP60059 68 aa14.41□□□□□ -0.1
CTCF-203ENST00000566078 H0YAA0 97 aa14.4□□□□□ -0.1
CTCF-203ENST00000566078 LCE2AQ5TA79 106 aaPredicted RBP14.4□□□□□ -0.1
CTCF-203ENST00000566078 ADM2Q7Z4H4 148 aa14.39□□□□□ -0.11
CTCF-203ENST00000566078 PRR15LQ9BU68 103 aa14.37□□□□□ -0.11
CTCF-203ENST00000566078 KRTAP3-2Q9BYR7 98 aa14.33□□□□□ -0.11
CTCF-203ENST00000566078 PSPHP1O15172 72 aa14.3□□□□□ -0.12
CTCF-203ENST00000566078 KRTAP10-6P60371 365 aaPredicted RBP14.29□□□□□ -0.12
CTCF-203ENST00000566078 P0C880 135 aa14.26□□□□□ -0.13
CTCF-203ENST00000566078 LORP23490 312 aaPredicted RBP14.19□□□□□ -0.14
CTCF-203ENST00000566078 KRTAP9-8Q9BYQ0 159 aa14.17□□□□□ -0.14
CTCF-203ENST00000566078 Q5VV11 94 aa14.15□□□□□ -0.14
CTCF-203ENST00000566078 MT2AP02795 61 aa14.13□□□□□ -0.15
CTCF-203ENST00000566078 A0A1B0GU33 70 aa14.06□□□□□ -0.16
CTCF-203ENST00000566078 MT1FP04733 61 aa14.04□□□□□ -0.16
CTCF-203ENST00000566078 KRTAP10-10P60014 251 aa14.01□□□□□ -0.17
CTCF-203ENST00000566078 UQCR11O14957 56 aa13.9□□□□□ -0.18
CTCF-203ENST00000566078 R4GN34 69 aa13.9□□□□□ -0.18
CTCF-203ENST00000566078 CRIPTQ9P021 101 aa13.9□□□□□ -0.19
CTCF-203ENST00000566078 M0QZ58 72 aa13.88□□□□□ -0.19
CTCF-203ENST00000566078 KRTAP13-4Q3LI77 160 aa13.88□□□□□ -0.19
CTCF-203ENST00000566078 A6NED7 52 aa13.86□□□□□ -0.19
CTCF-203ENST00000566078 SPATA8Q6RVD6 105 aa13.86□□□□□ -0.19
CTCF-203ENST00000566078 MIR22HGQ0VDD5 57 aa13.74□□□□□ -0.21
CTCF-203ENST00000566078 KRTAP19-1Q8IUB9 90 aa13.67□□□□□ -0.22
CTCF-203ENST00000566078 SPRR2GQ9BYE4 73 aa13.67□□□□□ -0.22
CTCF-203ENST00000566078 KRTAP9-3Q9BYQ3 159 aa13.67□□□□□ -0.22
CTCF-203ENST00000566078 LINC01554Q52M75 96 aa13.65□□□□□ -0.22
CTCF-203ENST00000566078 A0A0D9SG42 100 aa13.62□□□□□ -0.23
CTCF-203ENST00000566078 A8MU10 97 aa13.62□□□□□ -0.23
CTCF-203ENST00000566078 CDC42SE1Q9NRR8 79 aa13.56□□□□□ -0.24
CTCF-203ENST00000566078 BRK1Q8WUW1 75 aa13.5□□□□□ -0.25
CTCF-203ENST00000566078 KRTAP19-8Q3LI54 63 aa13.36□□□□□ -0.27
CTCF-203ENST00000566078 LCE2BO14633 110 aa13.35□□□□□ -0.27
CTCF-203ENST00000566078 A6NN06 94 aa13.35□□□□□ -0.27
CTCF-203ENST00000566078 KRTAP12-1P59990 96 aa13.32□□□□□ -0.28
CTCF-203ENST00000566078 SPINT4Q6UDR6 99 aa13.31□□□□□ -0.28
CTCF-203ENST00000566078 KRTAP12-2P59991 146 aa13.29□□□□□ -0.28
CTCF-203ENST00000566078 MT1BP07438 61 aa13.21□□□□□ -0.29
CTCF-203ENST00000566078 LCE2DQ5TA82 110 aaPredicted RBP13.18□□□□□ -0.3
CTCF-203ENST00000566078 PLAC4Q8WY50 150 aa13.18□□□□□ -0.3
CTCF-203ENST00000566078 K7ERS5 55 aa13.17□□□□□ -0.3
CTCF-203ENST00000566078 USH2AO75445 5202 aa13.14□□□□□ -0.31
CTCF-203ENST00000566078 CAMK2N1Q7Z7J9 78 aa12.99□□□□□ -0.33
CTCF-203ENST00000566078 PRO0628Q9UI54 55 aa12.99□□□□□ -0.33
CTCF-203ENST00000566078 KRTAP9-2Q9BYQ4 174 aa12.85□□□□□ -0.35
CTCF-203ENST00000566078 SSPOA2VEC9 5147 aa12.77□□□□□ -0.37
CTCF-203ENST00000566078 FSIP2Q5CZC0 6907 aa12.74□□□□□ -0.37
CTCF-203ENST00000566078 MT1XP80297 61 aa12.73□□□□□ -0.37
CTCF-203ENST00000566078 PMAIP1Q13794 54 aa12.72□□□□□ -0.37
CTCF-203ENST00000566078 KRTAP10-5P60370 271 aa12.7□□□□□ -0.38
CTCF-203ENST00000566078 PRO2289Q9P1D8 64 aa12.63□□□□□ -0.39
CTCF-203ENST00000566078 C10orf95Q9H7T3 257 aa12.62□□□□□ -0.39
CTCF-203ENST00000566078 KRTAP19-6Q3LI70 58 aa12.6□□□□□ -0.39
CTCF-203ENST00000566078 ROMO1P60602 79 aa12.58□□□□□ -0.4
CTCF-203ENST00000566078 CRCT1Q9UGL9 99 aa12.34□□□□□ -0.43
CTCF-203ENST00000566078 TNP1P09430 55 aa12.29□□□□□ -0.44
CTCF-203ENST00000566078 FCGBPQ9Y6R7 5405 aaPredicted RBP12.25□□□□□ -0.45
CTCF-203ENST00000566078 KRTAP25-1Q3LHN0 102 aa12.24□□□□□ -0.45
CTCF-203ENST00000566078 KRTAP10-7P60409 375 aaPredicted RBP12.21□□□□□ -0.46
CTCF-203ENST00000566078 KTN1-AS1Q86SY8 53 aa12.1□□□□□ -0.47
CTCF-203ENST00000566078 KRTAP10-12P60413 245 aa12.07□□□□□ -0.48
CTCF-203ENST00000566078 PRAC1Q96KF2 57 aa11.98□□□□□ -0.49
CTCF-203ENST00000566078 KRTAP9-6A0A140TA67 174 aa11.96□□□□□ -0.5
CTCF-203ENST00000566078 LCE3AQ5TA76 89 aa11.86□□□□□ -0.51
CTCF-203ENST00000566078 KMT2DO14686 5537 aa11.85□□□□□ -0.51
CTCF-203ENST00000566078 KRTAP4-8A0A0G2JLE6 195 aa11.79□□□□□ -0.52
CTCF-203ENST00000566078 KRTAP4-8Q9BYQ9 185 aa11.79□□□□□ -0.52
CTCF-203ENST00000566078 KRTAP23-1A1A580 65 aa11.78□□□□□ -0.52
CTCF-203ENST00000566078 PP632Q6XCG6 107 aa11.74□□□□□ -0.53
CTCF-203ENST00000566078 MACF1Q9UPN3 7388 aaKnown RBP11.72□□□□□ -0.53
CTCF-203ENST00000566078 KRTAP8-1Q8IUC2 63 aa11.56□□□□□ -0.56
CTCF-203ENST00000566078 SVIPQ8NHG7 77 aa11.47□□□□□ -0.57
CTCF-203ENST00000566078 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.45□□□□□ -0.58
CTCF-203ENST00000566078 KRTAP19-5Q3LI72 72 aa11.45□□□□□ -0.58
CTCF-203ENST00000566078 SYNE2Q8WXH0 6885 aaKnown RBP11.42□□□□□ -0.58
CTCF-203ENST00000566078 KRTAP12-3P60328 96 aa11.37□□□□□ -0.59
CTCF-203ENST00000566078 KRTAP19-7Q3SYF9 63 aa11.35□□□□□ -0.59
CTCF-203ENST00000566078 SPRR2FQ96RM1 72 aa11.2□□□□□ -0.62
CTCF-203ENST00000566078 MT1EP04732 61 aa11.19□□□□□ -0.62
CTCF-203ENST00000566078 KRTAP5-9P26371 169 aa11.13□□□□□ -0.63
CTCF-203ENST00000566078 KRTAP6-3Q3LI67 103 aa11.08□□□□□ -0.64
CTCF-203ENST00000566078 KRTAP15-1Q3LI76 137 aa11.06□□□□□ -0.64
CTCF-203ENST00000566078 MUC12Q9UKN1 5478 aa11.05□□□□□ -0.64
CTCF-203ENST00000566078 MT1LQ93083 61 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms