RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 H1FX-AS1Q4G0G2 97 aa6.75□□□□□ -1.33
VPS39-206ENST00000562662 COA5Q86WW8 74 aa6.72□□□□□ -1.33
VPS39-206ENST00000562662 LCE2CQ5TA81 110 aa6.71□□□□□ -1.34
VPS39-206ENST00000562662 FAT4Q6V0I7 4981 aa6.69□□□□□ -1.34
VPS39-206ENST00000562662 SERP1Q9Y6X1 66 aa6.69□□□□□ -1.34
VPS39-206ENST00000562662 S4R3F8 94 aa6.67□□□□□ -1.34
VPS39-206ENST00000562662 LCA10Q71F78 164 aa6.66□□□□□ -1.34
VPS39-206ENST00000562662 CHKB-CPT1BH3BT56 60 aa6.64□□□□□ -1.35
VPS39-206ENST00000562662 RPS28P62857 69 aaKnown RBP6.6□□□□□ -1.35
VPS39-206ENST00000562662 MT1HP80294 61 aa6.57□□□□□ -1.36
VPS39-206ENST00000562662 SPTSSBQ8NFR3 76 aa6.54□□□□□ -1.36
VPS39-206ENST00000562662 CSAG1Q6PB30 78 aa6.52□□□□□ -1.37
VPS39-206ENST00000562662 SMIM26A0A096LP01 95 aa6.48□□□□□ -1.37
VPS39-206ENST00000562662 M0R2T5 61 aa6.44□□□□□ -1.38
VPS39-206ENST00000562662 LCE2AQ5TA79 106 aaPredicted RBP6.44□□□□□ -1.38
VPS39-206ENST00000562662 LINC01558Q9Y6Z2 57 aa6.42□□□□□ -1.38
VPS39-206ENST00000562662 Q1T7F1 81 aa6.4□□□□□ -1.38
VPS39-206ENST00000562662 H0YAA0 97 aa6.39□□□□□ -1.39
VPS39-206ENST00000562662 V9GYY9 64 aa6.37□□□□□ -1.39
VPS39-206ENST00000562662 KRTAP10-6P60371 365 aaPredicted RBP6.35□□□□□ -1.39
VPS39-206ENST00000562662 ADM2Q7Z4H4 148 aa6.35□□□□□ -1.39
VPS39-206ENST00000562662 A0A1B0GU69 56 aa6.33□□□□□ -1.4
VPS39-206ENST00000562662 LORP23490 312 aaPredicted RBP6.33□□□□□ -1.4
VPS39-206ENST00000562662 SEC61GP60059 68 aa6.32□□□□□ -1.4
VPS39-206ENST00000562662 P0C880 135 aa6.31□□□□□ -1.4
VPS39-206ENST00000562662 PRR15LQ9BU68 103 aa6.31□□□□□ -1.4
VPS39-206ENST00000562662 KRTAP9-8Q9BYQ0 159 aa6.31□□□□□ -1.4
VPS39-206ENST00000562662 MT2AP02795 61 aa6.29□□□□□ -1.4
VPS39-206ENST00000562662 PSPHP1O15172 72 aa6.28□□□□□ -1.4
VPS39-206ENST00000562662 Q5VV11 94 aa6.26□□□□□ -1.41
VPS39-206ENST00000562662 MT1FP04733 61 aa6.25□□□□□ -1.41
VPS39-206ENST00000562662 A0A1B0GU33 70 aa6.2□□□□□ -1.42
VPS39-206ENST00000562662 KRTAP10-10P60014 251 aa6.19□□□□□ -1.42
VPS39-206ENST00000562662 KRTAP13-4Q3LI77 160 aa6.15□□□□□ -1.42
VPS39-206ENST00000562662 CRIPTQ9P021 101 aa6.15□□□□□ -1.42
VPS39-206ENST00000562662 M0QZ58 72 aa6.12□□□□□ -1.43
VPS39-206ENST00000562662 UQCR11O14957 56 aa6.12□□□□□ -1.43
VPS39-206ENST00000562662 R4GN34 69 aa6.12□□□□□ -1.43
VPS39-206ENST00000562662 SPATA8Q6RVD6 105 aa6.11□□□□□ -1.43
VPS39-206ENST00000562662 KRTAP9-3Q9BYQ3 159 aa6.1□□□□□ -1.43
VPS39-206ENST00000562662 KRTAP19-1Q8IUB9 90 aa6.09□□□□□ -1.43
VPS39-206ENST00000562662 A6NED7 52 aa6.08□□□□□ -1.44
VPS39-206ENST00000562662 SPRR2GQ9BYE4 73 aa6.08□□□□□ -1.44
VPS39-206ENST00000562662 MIR22HGQ0VDD5 57 aa6.04□□□□□ -1.44
VPS39-206ENST00000562662 LOC100996750A0A140TA64 210 aa6.03□□□□□ -1.44
VPS39-206ENST00000562662 KRTAP4-6Q9BYQ5 205 aa6.03□□□□□ -1.44
VPS39-206ENST00000562662 A8MU10 97 aa6.01□□□□□ -1.45
VPS39-206ENST00000562662 LINC01554Q52M75 96 aa5.99□□□□□ -1.45
VPS39-206ENST00000562662 A0A0D9SG42 100 aa5.98□□□□□ -1.45
VPS39-206ENST00000562662 CDC42SE1Q9NRR8 79 aa5.97□□□□□ -1.45
VPS39-206ENST00000562662 KRTAP19-8Q3LI54 63 aa5.96□□□□□ -1.46
VPS39-206ENST00000562662 A6NN06 94 aa5.92□□□□□ -1.46
VPS39-206ENST00000562662 KRTAP12-1P59990 96 aa5.9□□□□□ -1.46
VPS39-206ENST00000562662 BRK1Q8WUW1 75 aa5.9□□□□□ -1.46
VPS39-206ENST00000562662 MT1BP07438 61 aa5.89□□□□□ -1.47
VPS39-206ENST00000562662 KRTAP12-2P59991 146 aa5.87□□□□□ -1.47
VPS39-206ENST00000562662 SPINT4Q6UDR6 99 aa5.85□□□□□ -1.47
VPS39-206ENST00000562662 USH2AO75445 5202 aa5.85□□□□□ -1.47
VPS39-206ENST00000562662 PLAC4Q8WY50 150 aa5.81□□□□□ -1.48
VPS39-206ENST00000562662 K7ERS5 55 aa5.76□□□□□ -1.49
VPS39-206ENST00000562662 KRTAP9-2Q9BYQ4 174 aa5.72□□□□□ -1.49
VPS39-206ENST00000562662 PRO0628Q9UI54 55 aa5.71□□□□□ -1.5
VPS39-206ENST00000562662 CAMK2N1Q7Z7J9 78 aa5.7□□□□□ -1.5
VPS39-206ENST00000562662 SSPOA2VEC9 5147 aa5.7□□□□□ -1.5
VPS39-206ENST00000562662 MT1XP80297 61 aa5.66□□□□□ -1.5
VPS39-206ENST00000562662 KRTAP10-5P60370 271 aa5.65□□□□□ -1.5
VPS39-206ENST00000562662 KRTAP19-6Q3LI70 58 aa5.62□□□□□ -1.51
VPS39-206ENST00000562662 C10orf95Q9H7T3 257 aa5.6□□□□□ -1.51
VPS39-206ENST00000562662 PRO2289Q9P1D8 64 aa5.57□□□□□ -1.52
VPS39-206ENST00000562662 PMAIP1Q13794 54 aa5.56□□□□□ -1.52
VPS39-206ENST00000562662 FSIP2Q5CZC0 6907 aa5.54□□□□□ -1.52
VPS39-206ENST00000562662 ROMO1P60602 79 aa5.54□□□□□ -1.52
VPS39-206ENST00000562662 KRTAP4-8Q9BYQ9 185 aa5.51□□□□□ -1.53
VPS39-206ENST00000562662 CRCT1Q9UGL9 99 aa5.49□□□□□ -1.53
VPS39-206ENST00000562662 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.47□□□□□ -1.53
VPS39-206ENST00000562662 FCGBPQ9Y6R7 5405 aaPredicted RBP5.44□□□□□ -1.54
VPS39-206ENST00000562662 KRTAP9-6A0A140TA67 174 aa5.43□□□□□ -1.54
VPS39-206ENST00000562662 TNP1P09430 55 aa5.42□□□□□ -1.54
VPS39-206ENST00000562662 KRTAP10-7P60409 375 aaPredicted RBP5.42□□□□□ -1.54
VPS39-206ENST00000562662 KRTAP25-1Q3LHN0 102 aa5.41□□□□□ -1.54
VPS39-206ENST00000562662 KRTAP10-12P60413 245 aa5.37□□□□□ -1.55
VPS39-206ENST00000562662 KTN1-AS1Q86SY8 53 aa5.32□□□□□ -1.56
VPS39-206ENST00000562662 PRAC1Q96KF2 57 aa5.26□□□□□ -1.57
VPS39-206ENST00000562662 LCE3AQ5TA76 89 aa5.25□□□□□ -1.57
VPS39-206ENST00000562662 KMT2DO14686 5537 aa5.25□□□□□ -1.57
VPS39-206ENST00000562662 KRTAP4-8A0A0G2JLE6 195 aa5.24□□□□□ -1.57
VPS39-206ENST00000562662 KRTAP4-12Q9BQ66 201 aa5.24□□□□□ -1.57
VPS39-206ENST00000562662 KRTAP23-1A1A580 65 aa5.23□□□□□ -1.57
VPS39-206ENST00000562662 LCE3BQ5TA77 95 aa5.22□□□□□ -1.57
VPS39-206ENST00000562662 KRTAP9-9Q9BYP9 154 aa5.2□□□□□ -1.58
VPS39-206ENST00000562662 KRTAP9-4Q9BYQ2 154 aa5.2□□□□□ -1.58
VPS39-206ENST00000562662 PP632Q6XCG6 107 aa5.17□□□□□ -1.58
VPS39-206ENST00000562662 KRTAP8-1Q8IUC2 63 aa5.14□□□□□ -1.59
VPS39-206ENST00000562662 MACF1Q9UPN3 7388 aaKnown RBP5.13□□□□□ -1.59
VPS39-206ENST00000562662 KRTAP19-5Q3LI72 72 aa5.08□□□□□ -1.6
VPS39-206ENST00000562662 KRTAP19-7Q3SYF9 63 aa5.06□□□□□ -1.6
VPS39-206ENST00000562662 KRTAP12-3P60328 96 aa5.03□□□□□ -1.6
VPS39-206ENST00000562662 MT1EP04732 61 aa4.98□□□□□ -1.61
VPS39-206ENST00000562662 KRTAP5-9P26371 169 aa4.98□□□□□ -1.61
VPS39-206ENST00000562662 SVIPQ8NHG7 77 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms