RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ALMS1Q8TCU4 4167 aa4.69□□□□□ -1.66
VPS39-205ENST00000562258 MYCBP2O75592 4640 aa4.64□□□□□ -1.67
VPS39-205ENST00000562258 DNAH3Q8TD57 4116 aa4.64□□□□□ -1.67
VPS39-205ENST00000562258 FAT3Q8TDW7 4589 aa4.63□□□□□ -1.67
VPS39-205ENST00000562258 A6NN06 94 aa4.63□□□□□ -1.67
VPS39-205ENST00000562258 SACSQ9NZJ4 4579 aa4.63□□□□□ -1.67
VPS39-205ENST00000562258 HERC2O95714 4834 aa4.62□□□□□ -1.67
VPS39-205ENST00000562258 KRTAP17-1Q9BYP8 105 aa4.6□□□□□ -1.67
VPS39-205ENST00000562258 DNAH2Q9P225 4427 aa4.59□□□□□ -1.67
VPS39-205ENST00000562258 RYR2Q92736 4967 aa4.59□□□□□ -1.67
VPS39-205ENST00000562258 VPS13BQ7Z7G8 4022 aa4.59□□□□□ -1.68
VPS39-205ENST00000562258 APOBP04114 4563 aaKnown RBP4.59□□□□□ -1.68
VPS39-205ENST00000562258 DNAH17Q9UFH2 4485 aa4.59□□□□□ -1.68
VPS39-205ENST00000562258 DNAH8Q96JB1 4490 aa4.58□□□□□ -1.68
VPS39-205ENST00000562258 LUZP6Q538Z0 58 aa4.58□□□□□ -1.68
VPS39-205ENST00000562258 P0C880 135 aa4.57□□□□□ -1.68
VPS39-205ENST00000562258 LRP1Q07954 4544 aaKnown RBP4.57□□□□□ -1.68
VPS39-205ENST00000562258 DYNC2H1Q8NCM8 4307 aaKnown RBP4.54□□□□□ -1.68
VPS39-205ENST00000562258 FAT2Q9NYQ8 4349 aa4.52□□□□□ -1.69
VPS39-205ENST00000562258 PKHD1P08F94 4074 aa4.51□□□□□ -1.69
VPS39-205ENST00000562258 DNAH7Q8WXX0 4024 aa4.51□□□□□ -1.69
VPS39-205ENST00000562258 KRTAP3-1Q9BYR8 98 aa4.5□□□□□ -1.69
VPS39-205ENST00000562258 BIRC6Q9NR09 4857 aa4.49□□□□□ -1.69
VPS39-205ENST00000562258 DNAH6Q9C0G6 4158 aa4.48□□□□□ -1.69
VPS39-205ENST00000562258 EPPK1P58107 5090 aaKnown RBP4.47□□□□□ -1.69
VPS39-205ENST00000562258 PCLOQ9Y6V0 5065 aa4.46□□□□□ -1.7
VPS39-205ENST00000562258 ROMO1P60602 79 aa4.45□□□□□ -1.7
VPS39-205ENST00000562258 LRP2P98164 4655 aa4.42□□□□□ -1.7
VPS39-205ENST00000562258 NDUFAF8A1L188 74 aa4.41□□□□□ -1.7
VPS39-205ENST00000562258 KRTAP25-1Q3LHN0 102 aa4.4□□□□□ -1.7
VPS39-205ENST00000562258 TNP1P09430 55 aa4.38□□□□□ -1.71
VPS39-205ENST00000562258 KRTAP4-1Q9BYQ7 146 aa4.38□□□□□ -1.71
VPS39-205ENST00000562258 H0YAA0 97 aa4.37□□□□□ -1.71
VPS39-205ENST00000562258 FRAS1Q86XX4 4008 aa4.37□□□□□ -1.71
VPS39-205ENST00000562258 C10orf95Q9H7T3 257 aa4.34□□□□□ -1.72
VPS39-205ENST00000562258 PRO2289Q9P1D8 64 aa4.33□□□□□ -1.72
VPS39-205ENST00000562258 HSPG2P98160 4391 aa4.32□□□□□ -1.72
VPS39-205ENST00000562258 ABCA13Q86UQ4 5058 aa4.32□□□□□ -1.72
VPS39-205ENST00000562258 HECTD4Q9Y4D8 3996 aa4.29□□□□□ -1.72
VPS39-205ENST00000562258 KRTAP3-3Q9BYR6 98 aa4.24□□□□□ -1.73
VPS39-205ENST00000562258 HERC1Q15751 4861 aa4.23□□□□□ -1.73
VPS39-205ENST00000562258 KRTAP10-6P60371 365 aaPredicted RBP4.22□□□□□ -1.73
VPS39-205ENST00000562258 FSIP2Q5CZC0 6907 aa4.22□□□□□ -1.73
VPS39-205ENST00000562258 KRTAP12-2P59991 146 aa4.21□□□□□ -1.74
VPS39-205ENST00000562258 KRTAP13-4Q3LI77 160 aa4.2□□□□□ -1.74
VPS39-205ENST00000562258 PKD1P98161 4303 aa4.2□□□□□ -1.74
VPS39-205ENST00000562258 MT1HP80294 61 aa4.18□□□□□ -1.74
VPS39-205ENST00000562258 LORP23490 312 aaPredicted RBP4.16□□□□□ -1.74
VPS39-205ENST00000562258 RNF213Q63HN8 5207 aa4.16□□□□□ -1.74
VPS39-205ENST00000562258 KRTAP12-1P59990 96 aa4.16□□□□□ -1.74
VPS39-205ENST00000562258 UBR4Q5T4S7 5183 aa4.15□□□□□ -1.75
VPS39-205ENST00000562258 LPAP08519 4548 aa4.14□□□□□ -1.75
VPS39-205ENST00000562258 KRTAP3-2Q9BYR7 98 aa4.13□□□□□ -1.75
VPS39-205ENST00000562258 MT2AP02795 61 aa4.06□□□□□ -1.76
VPS39-205ENST00000562258 MT1FP04733 61 aa4.02□□□□□ -1.77
VPS39-205ENST00000562258 PP632Q6XCG6 107 aa4.02□□□□□ -1.77
VPS39-205ENST00000562258 MUC2Q02817 5179 aa4□□□□□ -1.77
VPS39-205ENST00000562258 FAT4Q6V0I7 4981 aa3.92□□□□□ -1.78
VPS39-205ENST00000562258 KRTAP10-12P60413 245 aa3.9□□□□□ -1.78
VPS39-205ENST00000562258 LCE2CQ5TA81 110 aa3.9□□□□□ -1.79
VPS39-205ENST00000562258 HMCN2Q8NDA2 5059 aa3.88□□□□□ -1.79
VPS39-205ENST00000562258 PKHD1L1Q86WI1 4243 aa3.88□□□□□ -1.79
VPS39-205ENST00000562258 TNXBP22105 4242 aa3.86□□□□□ -1.79
VPS39-205ENST00000562258 SPRR2GQ9BYE4 73 aa3.83□□□□□ -1.8
VPS39-205ENST00000562258 CRCT1Q9UGL9 99 aa3.83□□□□□ -1.8
VPS39-205ENST00000562258 KRTAP8-1Q8IUC2 63 aa3.83□□□□□ -1.8
VPS39-205ENST00000562258 KRTAP9-8Q9BYQ0 159 aa3.82□□□□□ -1.8
VPS39-205ENST00000562258 KRTAP15-1Q3LI76 137 aa3.81□□□□□ -1.8
VPS39-205ENST00000562258 KRTAP19-1Q8IUB9 90 aa3.79□□□□□ -1.8
VPS39-205ENST00000562258 KRTAP19-2Q3LHN2 52 aa3.78□□□□□ -1.8
VPS39-205ENST00000562258 LCE3AQ5TA76 89 aa3.77□□□□□ -1.81
VPS39-205ENST00000562258 KRTAP12-3P60328 96 aa3.74□□□□□ -1.81
VPS39-205ENST00000562258 MUC17Q685J3 4493 aa3.72□□□□□ -1.81
VPS39-205ENST00000562258 SPRR2FQ96RM1 72 aa3.72□□□□□ -1.81
VPS39-205ENST00000562258 KRTAP9-3Q9BYQ3 159 aa3.69□□□□□ -1.82
VPS39-205ENST00000562258 KRTAP9-2Q9BYQ4 174 aa3.68□□□□□ -1.82
VPS39-205ENST00000562258 LCE2BO14633 110 aa3.66□□□□□ -1.82
VPS39-205ENST00000562258 LCE2AQ5TA79 106 aaPredicted RBP3.65□□□□□ -1.82
VPS39-205ENST00000562258 MT1BP07438 61 aa3.65□□□□□ -1.83
VPS39-205ENST00000562258 FLGP20930 4061 aaPredicted RBP3.64□□□□□ -1.83
VPS39-205ENST00000562258 KRTAP19-8Q3LI54 63 aa3.64□□□□□ -1.83
VPS39-205ENST00000562258 KRTAP10-7P60409 375 aaPredicted RBP3.59□□□□□ -1.83
VPS39-205ENST00000562258 SYNE1Q8NF91 8797 aaKnown RBP3.58□□□□□ -1.84
VPS39-205ENST00000562258 KRTAP4-8A0A0G2JLE6 195 aa3.57□□□□□ -1.84
VPS39-205ENST00000562258 KRTAP4-8Q9BYQ9 185 aa3.57□□□□□ -1.84
VPS39-205ENST00000562258 KRTAP10-5P60370 271 aa3.57□□□□□ -1.84
VPS39-205ENST00000562258 MT1XP80297 61 aa3.56□□□□□ -1.84
VPS39-205ENST00000562258 OBSCNQ5VST9 7968 aa3.54□□□□□ -1.84
VPS39-205ENST00000562258 USH2AO75445 5202 aa3.54□□□□□ -1.84
VPS39-205ENST00000562258 KRTAP19-5Q3LI72 72 aa3.54□□□□□ -1.84
VPS39-205ENST00000562258 KRTAP23-1A1A580 65 aa3.52□□□□□ -1.85
VPS39-205ENST00000562258 SPRR2EP22531 72 aa3.47□□□□□ -1.85
VPS39-205ENST00000562258 SPRR2BP35325 72 aa3.47□□□□□ -1.85
VPS39-205ENST00000562258 SPRR2AP35326 72 aa3.47□□□□□ -1.85
VPS39-205ENST00000562258 KRTAP9-6A0A140TA67 174 aa3.46□□□□□ -1.86
VPS39-205ENST00000562258 SYNE2Q8WXH0 6885 aaKnown RBP3.42□□□□□ -1.86
VPS39-205ENST00000562258 LCE2DQ5TA82 110 aaPredicted RBP3.4□□□□□ -1.87
VPS39-205ENST00000562258 DSTQ03001 7570 aaKnown RBP3.39□□□□□ -1.87
VPS39-205ENST00000562258 INE1O15225 51 aa3.37□□□□□ -1.87
VPS39-205ENST00000562258 KRTAP19-6Q3LI70 58 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms