RNA–Protein interactions for RNA: ENST00000561638.1

TMEM249-201, Transcript of transmembrane protein 249, humanhuman

TSL 2

Gene TMEM249, Length 1,762 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM249-201ENST00000561638 LINC01558Q9Y6Z2 57 aa12.33□□□□□ -0.44
TMEM249-201ENST00000561638 COA5Q86WW8 74 aa12.32□□□□□ -0.44
TMEM249-201ENST00000561638 TP53AIP1Q9HCN2 124 aa12.3□□□□□ -0.44
TMEM249-201ENST00000561638 MUC17Q685J3 4493 aa12.27□□□□□ -0.44
TMEM249-201ENST00000561638 Q5W150 140 aa12.22□□□□□ -0.45
TMEM249-201ENST00000561638 KRTAP4-1Q9BYQ7 146 aa12.19□□□□□ -0.46
TMEM249-201ENST00000561638 MUC2Q02817 5179 aa12.19□□□□□ -0.46
TMEM249-201ENST00000561638 RNF213Q63HN8 5207 aa12.15□□□□□ -0.46
TMEM249-201ENST00000561638 A8MU10 97 aa12.13□□□□□ -0.47
TMEM249-201ENST00000561638 SPINK7P58062 85 aa12.12□□□□□ -0.47
TMEM249-201ENST00000561638 IGKV2D-30A0A075B6S6 120 aa12.1□□□□□ -0.47
TMEM249-201ENST00000561638 IGKV2-30P06310 120 aa12.1□□□□□ -0.47
TMEM249-201ENST00000561638 HRES1P13985 223 aa11.94□□□□□ -0.5
TMEM249-201ENST00000561638 COX6B2Q6YFQ2 88 aa11.9□□□□□ -0.51
TMEM249-201ENST00000561638 LINC01554Q52M75 96 aa11.88□□□□□ -0.51
TMEM249-201ENST00000561638 ACYP2P14621 99 aa11.86□□□□□ -0.51
TMEM249-201ENST00000561638 KRTAP19-2Q3LHN2 52 aa11.78□□□□□ -0.52
TMEM249-201ENST00000561638 SPATA8Q6RVD6 105 aa11.73□□□□□ -0.53
TMEM249-201ENST00000561638 A0A1B0GU69 56 aa11.72□□□□□ -0.53
TMEM249-201ENST00000561638 FAT4Q6V0I7 4981 aa11.71□□□□□ -0.54
TMEM249-201ENST00000561638 LCE2CQ5TA81 110 aa11.7□□□□□ -0.54
TMEM249-201ENST00000561638 UQCR11O14957 56 aa11.67□□□□□ -0.54
TMEM249-201ENST00000561638 DMAC1Q96GE9 116 aa11.62□□□□□ -0.55
TMEM249-201ENST00000561638 H3BS24 57 aa11.62□□□□□ -0.55
TMEM249-201ENST00000561638 MIR22HGQ0VDD5 57 aa11.62□□□□□ -0.55
TMEM249-201ENST00000561638 PRAC1Q96KF2 57 aa11.59□□□□□ -0.55
TMEM249-201ENST00000561638 H1FX-AS1Q4G0G2 97 aa11.59□□□□□ -0.55
TMEM249-201ENST00000561638 MT1HP80294 61 aa11.56□□□□□ -0.56
TMEM249-201ENST00000561638 KRTAP3-1Q9BYR8 98 aa11.55□□□□□ -0.56
TMEM249-201ENST00000561638 M0R2T5 61 aa11.52□□□□□ -0.57
TMEM249-201ENST00000561638 FLGP20930 4061 aaPredicted RBP11.48□□□□□ -0.57
TMEM249-201ENST00000561638 LCE2AQ5TA79 106 aaPredicted RBP11.45□□□□□ -0.58
TMEM249-201ENST00000561638 S4R3F8 94 aa11.41□□□□□ -0.58
TMEM249-201ENST00000561638 ADM2Q7Z4H4 148 aa11.4□□□□□ -0.58
TMEM249-201ENST00000561638 CSAG1Q6PB30 78 aa11.34□□□□□ -0.59
TMEM249-201ENST00000561638 KRTAP10-6P60371 365 aaPredicted RBP11.21□□□□□ -0.61
TMEM249-201ENST00000561638 KRTAP3-3Q9BYR6 98 aa11.18□□□□□ -0.62
TMEM249-201ENST00000561638 LORP23490 312 aaPredicted RBP11.16□□□□□ -0.62
TMEM249-201ENST00000561638 KRTAP25-1Q3LHN0 102 aa11.13□□□□□ -0.63
TMEM249-201ENST00000561638 ROMO1P60602 79 aa11.06□□□□□ -0.64
TMEM249-201ENST00000561638 K7ERS5 55 aa11.05□□□□□ -0.64
TMEM249-201ENST00000561638 KRTAP9-8Q9BYQ0 159 aa11.02□□□□□ -0.65
TMEM249-201ENST00000561638 MT2AP02795 61 aa10.96□□□□□ -0.65
TMEM249-201ENST00000561638 KRTAP10-10P60014 251 aa10.92□□□□□ -0.66
TMEM249-201ENST00000561638 MT1FP04733 61 aa10.89□□□□□ -0.67
TMEM249-201ENST00000561638 H0YAA0 97 aa10.85□□□□□ -0.67
TMEM249-201ENST00000561638 A0A1B0GU33 70 aa10.84□□□□□ -0.67
TMEM249-201ENST00000561638 P0C880 135 aa10.65□□□□□ -0.7
TMEM249-201ENST00000561638 KRTAP9-3Q9BYQ3 159 aa10.65□□□□□ -0.71
TMEM249-201ENST00000561638 KRTAP3-2Q9BYR7 98 aa10.64□□□□□ -0.71
TMEM249-201ENST00000561638 CRIPTQ9P021 101 aa10.61□□□□□ -0.71
TMEM249-201ENST00000561638 LCE2DQ5TA82 110 aaPredicted RBP10.6□□□□□ -0.71
TMEM249-201ENST00000561638 KRTAP9-2Q9BYQ4 174 aa10.53□□□□□ -0.72
TMEM249-201ENST00000561638 R4GN34 69 aa10.52□□□□□ -0.72
TMEM249-201ENST00000561638 SPINT4Q6UDR6 99 aa10.52□□□□□ -0.73
TMEM249-201ENST00000561638 KRTAP19-1Q8IUB9 90 aa10.48□□□□□ -0.73
TMEM249-201ENST00000561638 SPRR2GQ9BYE4 73 aa10.47□□□□□ -0.73
TMEM249-201ENST00000561638 M0QZ58 72 aa10.47□□□□□ -0.73
TMEM249-201ENST00000561638 LCE2BO14633 110 aa10.44□□□□□ -0.74
TMEM249-201ENST00000561638 FSIP2Q5CZC0 6907 aa10.32□□□□□ -0.76
TMEM249-201ENST00000561638 KRTAP19-8Q3LI54 63 aa10.25□□□□□ -0.77
TMEM249-201ENST00000561638 USH2AO75445 5202 aa10.25□□□□□ -0.77
TMEM249-201ENST00000561638 KRTAP13-4Q3LI77 160 aa10.24□□□□□ -0.77
TMEM249-201ENST00000561638 KRTAP15-1Q3LI76 137 aa10.21□□□□□ -0.78
TMEM249-201ENST00000561638 NDUFAF8A1L188 74 aa10.16□□□□□ -0.78
TMEM249-201ENST00000561638 MT1BP07438 61 aa10.16□□□□□ -0.78
TMEM249-201ENST00000561638 A0A0D9SG42 100 aa10.1□□□□□ -0.79
TMEM249-201ENST00000561638 PLAC4Q8WY50 150 aa10.1□□□□□ -0.79
TMEM249-201ENST00000561638 CRCT1Q9UGL9 99 aa10.08□□□□□ -0.8
TMEM249-201ENST00000561638 SSPOA2VEC9 5147 aa10.01□□□□□ -0.81
TMEM249-201ENST00000561638 KRTAP19-6Q3LI70 58 aa9.94□□□□□ -0.82
TMEM249-201ENST00000561638 KRTAP9-6A0A140TA67 174 aa9.92□□□□□ -0.82
TMEM249-201ENST00000561638 A0A0A0MQY5 61 aa9.88□□□□□ -0.83
TMEM249-201ENST00000561638 C10orf95Q9H7T3 257 aa9.85□□□□□ -0.83
TMEM249-201ENST00000561638 KRTAP12-1P59990 96 aa9.83□□□□□ -0.84
TMEM249-201ENST00000561638 CAMK2N1Q7Z7J9 78 aa9.82□□□□□ -0.84
TMEM249-201ENST00000561638 PRO2289Q9P1D8 64 aa9.8□□□□□ -0.84
TMEM249-201ENST00000561638 KRTAP12-2P59991 146 aa9.79□□□□□ -0.84
TMEM249-201ENST00000561638 KRTAP10-5P60370 271 aa9.78□□□□□ -0.84
TMEM249-201ENST00000561638 LUZP6Q538Z0 58 aa9.75□□□□□ -0.85
TMEM249-201ENST00000561638 MT1XP80297 61 aa9.73□□□□□ -0.85
TMEM249-201ENST00000561638 FCGBPQ9Y6R7 5405 aaPredicted RBP9.71□□□□□ -0.86
TMEM249-201ENST00000561638 PP632Q6XCG6 107 aa9.45□□□□□ -0.9
TMEM249-201ENST00000561638 MACF1Q9UPN3 7388 aaKnown RBP9.36□□□□□ -0.91
TMEM249-201ENST00000561638 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.34□□□□□ -0.91
TMEM249-201ENST00000561638 KRTAP10-7P60409 375 aaPredicted RBP9.32□□□□□ -0.92
TMEM249-201ENST00000561638 KRTAP10-12P60413 245 aa9.23□□□□□ -0.93
TMEM249-201ENST00000561638 TNP1P09430 55 aa9.2□□□□□ -0.94
TMEM249-201ENST00000561638 SYNE2Q8WXH0 6885 aaKnown RBP9.17□□□□□ -0.94
TMEM249-201ENST00000561638 KMT2DO14686 5537 aa9.13□□□□□ -0.95
TMEM249-201ENST00000561638 KRTAP4-8A0A0G2JLE6 195 aa9.09□□□□□ -0.95
TMEM249-201ENST00000561638 KRTAP4-8Q9BYQ9 185 aa9.09□□□□□ -0.95
TMEM249-201ENST00000561638 KRTAP8-1Q8IUC2 63 aa9.05□□□□□ -0.96
TMEM249-201ENST00000561638 KRTAP9-7A8MTY7 169 aa9.01□□□□□ -0.97
TMEM249-201ENST00000561638 KRTAP23-1A1A580 65 aa8.99□□□□□ -0.97
TMEM249-201ENST00000561638 KRTAP6-3Q3LI67 103 aa8.94□□□□□ -0.98
TMEM249-201ENST00000561638 LCE3AQ5TA76 89 aa8.88□□□□□ -0.99
TMEM249-201ENST00000561638 SPRR2FQ96RM1 72 aa8.85□□□□□ -0.99
TMEM249-201ENST00000561638 KRTAP5-9P26371 169 aa8.84□□□□□ -0.99
TMEM249-201ENST00000561638 SPRR5A0A1B0GTR4 108 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms