RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 HRES1P13985 223 aa4.76□□□□□ -1.65
LDLR-211ENST00000560173 CYP4F30PQ9H0H9 118 aa4.76□□□□□ -1.65
LDLR-211ENST00000560173 MPLKIPQ8TAP9 179 aa4.75□□□□□ -1.65
LDLR-211ENST00000560173 Q5W150 140 aa4.74□□□□□ -1.65
LDLR-211ENST00000560173 IGKV2-30P06310 120 aa4.73□□□□□ -1.65
LDLR-211ENST00000560173 C4orf26Q17RF5 130 aa4.73□□□□□ -1.65
LDLR-211ENST00000560173 M0R2T5 61 aa4.72□□□□□ -1.65
LDLR-211ENST00000560173 LORP23490 312 aaPredicted RBP4.72□□□□□ -1.65
LDLR-211ENST00000560173 SPINK7P58062 85 aa4.72□□□□□ -1.65
LDLR-211ENST00000560173 KRTAP10-6P60371 365 aaPredicted RBP4.72□□□□□ -1.65
LDLR-211ENST00000560173 C7orf65Q6ZTY9 151 aa4.71□□□□□ -1.66
LDLR-211ENST00000560173 RBM12B-AS1Q9P1G2 102 aa4.71□□□□□ -1.66
LDLR-211ENST00000560173 PRO0628Q9UI54 55 aa4.71□□□□□ -1.66
LDLR-211ENST00000560173 IGKV2D-30A0A075B6S6 120 aa4.67□□□□□ -1.66
LDLR-211ENST00000560173 SMIM26A0A096LP01 95 aa4.67□□□□□ -1.66
LDLR-211ENST00000560173 ACYP2P14621 99 aa4.65□□□□□ -1.67
LDLR-211ENST00000560173 A8MUN3 132 aa4.64□□□□□ -1.67
LDLR-211ENST00000560173 DMAC1Q96GE9 116 aa4.63□□□□□ -1.67
LDLR-211ENST00000560173 COA5Q86WW8 74 aa4.61□□□□□ -1.67
LDLR-211ENST00000560173 SYNE2Q8WXH0 6885 aaKnown RBP4.59□□□□□ -1.67
LDLR-211ENST00000560173 KRTAP9-8Q9BYQ0 159 aa4.59□□□□□ -1.67
LDLR-211ENST00000560173 MACF1Q9UPN3 7388 aaKnown RBP4.58□□□□□ -1.68
LDLR-211ENST00000560173 SSPOA2VEC9 5147 aa4.58□□□□□ -1.68
LDLR-211ENST00000560173 CHKB-CPT1BH3BT56 60 aa4.58□□□□□ -1.68
LDLR-211ENST00000560173 USH2AO75445 5202 aa4.56□□□□□ -1.68
LDLR-211ENST00000560173 MT2AP02795 61 aa4.55□□□□□ -1.68
LDLR-211ENST00000560173 Q1T7F1 81 aa4.55□□□□□ -1.68
LDLR-211ENST00000560173 H1FX-AS1Q4G0G2 97 aa4.55□□□□□ -1.68
LDLR-211ENST00000560173 SPTSSBQ8NFR3 76 aa4.55□□□□□ -1.68
LDLR-211ENST00000560173 FCGBPQ9Y6R7 5405 aaPredicted RBP4.54□□□□□ -1.68
LDLR-211ENST00000560173 PMAIP1Q13794 54 aa4.52□□□□□ -1.69
LDLR-211ENST00000560173 MT1FP04733 61 aa4.51□□□□□ -1.69
LDLR-211ENST00000560173 KRTAP3-1Q9BYR8 98 aa4.49□□□□□ -1.69
LDLR-211ENST00000560173 KRTAP10-10P60014 251 aa4.47□□□□□ -1.69
LDLR-211ENST00000560173 PRR15LQ9BU68 103 aa4.47□□□□□ -1.69
LDLR-211ENST00000560173 LINC01558Q9Y6Z2 57 aa4.47□□□□□ -1.69
LDLR-211ENST00000560173 KRTAP19-1Q8IUB9 90 aa4.45□□□□□ -1.7
LDLR-211ENST00000560173 KRTAP9-3Q9BYQ3 159 aa4.45□□□□□ -1.7
LDLR-211ENST00000560173 S4R3F8 94 aa4.41□□□□□ -1.7
LDLR-211ENST00000560173 A0A1B0GU69 56 aa4.4□□□□□ -1.71
LDLR-211ENST00000560173 LCE2BO14633 110 aa4.4□□□□□ -1.71
LDLR-211ENST00000560173 PSPHP1O15172 72 aa4.4□□□□□ -1.71
LDLR-211ENST00000560173 LCA10Q71F78 164 aa4.39□□□□□ -1.71
LDLR-211ENST00000560173 Q5VV11 94 aa4.37□□□□□ -1.71
LDLR-211ENST00000560173 CSAG1Q6PB30 78 aa4.37□□□□□ -1.71
LDLR-211ENST00000560173 KRTAP3-3Q9BYR6 98 aa4.35□□□□□ -1.71
LDLR-211ENST00000560173 A6NED7 52 aa4.33□□□□□ -1.72
LDLR-211ENST00000560173 KRTAP6-3Q3LI67 103 aa4.33□□□□□ -1.72
LDLR-211ENST00000560173 NEBP20929 6669 aa4.32□□□□□ -1.72
LDLR-211ENST00000560173 BRK1Q8WUW1 75 aa4.31□□□□□ -1.72
LDLR-211ENST00000560173 UQCR11O14957 56 aa4.3□□□□□ -1.72
LDLR-211ENST00000560173 CDC42SE1Q9NRR8 79 aa4.27□□□□□ -1.73
LDLR-211ENST00000560173 KRTAP19-6Q3LI70 58 aa4.25□□□□□ -1.73
LDLR-211ENST00000560173 A0A1B0GU33 70 aa4.23□□□□□ -1.73
LDLR-211ENST00000560173 H0YAA0 97 aa4.23□□□□□ -1.73
LDLR-211ENST00000560173 KTN1-AS1Q86SY8 53 aa4.23□□□□□ -1.73
LDLR-211ENST00000560173 MIR22HGQ0VDD5 57 aa4.22□□□□□ -1.73
LDLR-211ENST00000560173 SPATA8Q6RVD6 105 aa4.22□□□□□ -1.73
LDLR-211ENST00000560173 SPRR2GQ9BYE4 73 aa4.22□□□□□ -1.73
LDLR-211ENST00000560173 KRTAP20-1Q3LI63 56 aa4.21□□□□□ -1.74
LDLR-211ENST00000560173 CRIPTQ9P021 101 aa4.19□□□□□ -1.74
LDLR-211ENST00000560173 KRTAP19-8Q3LI54 63 aa4.18□□□□□ -1.74
LDLR-211ENST00000560173 KRTAP3-2Q9BYR7 98 aa4.18□□□□□ -1.74
LDLR-211ENST00000560173 MT1BP07438 61 aa4.17□□□□□ -1.74
LDLR-211ENST00000560173 ADM2Q7Z4H4 148 aa4.16□□□□□ -1.74
LDLR-211ENST00000560173 MUC12Q9UKN1 5478 aa4.15□□□□□ -1.75
LDLR-211ENST00000560173 K7ERS5 55 aa4.13□□□□□ -1.75
LDLR-211ENST00000560173 M0QZ58 72 aa4.13□□□□□ -1.75
LDLR-211ENST00000560173 P0C880 135 aa4.1□□□□□ -1.75
LDLR-211ENST00000560173 KRTAP23-1A1A580 65 aa4.09□□□□□ -1.75
LDLR-211ENST00000560173 A8MU10 97 aa4.07□□□□□ -1.76
LDLR-211ENST00000560173 A6NN06 94 aa4.06□□□□□ -1.76
LDLR-211ENST00000560173 KRTAP10-5P60370 271 aa4.05□□□□□ -1.76
LDLR-211ENST00000560173 R4GN34 69 aa4.05□□□□□ -1.76
LDLR-211ENST00000560173 LINC01554Q52M75 96 aa4.04□□□□□ -1.76
LDLR-211ENST00000560173 PRAC1Q96KF2 57 aa4.03□□□□□ -1.76
LDLR-211ENST00000560173 KRTAP13-4Q3LI77 160 aa4□□□□□ -1.77
LDLR-211ENST00000560173 A0A0D9SG42 100 aa3.99□□□□□ -1.77
LDLR-211ENST00000560173 KRTAP2-3P0C7H8 128 aa3.99□□□□□ -1.77
LDLR-211ENST00000560173 KRTAP2-4Q9BYR9 128 aa3.99□□□□□ -1.77
LDLR-211ENST00000560173 MDN1Q9NU22 5596 aa3.96□□□□□ -1.78
LDLR-211ENST00000560173 KRTAP5-9P26371 169 aa3.96□□□□□ -1.78
LDLR-211ENST00000560173 PLAC4Q8WY50 150 aa3.96□□□□□ -1.78
LDLR-211ENST00000560173 MT1XP80297 61 aa3.94□□□□□ -1.78
LDLR-211ENST00000560173 KMT2DO14686 5537 aa3.92□□□□□ -1.78
LDLR-211ENST00000560173 SPINT4Q6UDR6 99 aa3.92□□□□□ -1.78
LDLR-211ENST00000560173 PRO2289Q9P1D8 64 aa3.92□□□□□ -1.78
LDLR-211ENST00000560173 KRTAP12-1P59990 96 aa3.91□□□□□ -1.78
LDLR-211ENST00000560173 KRTAP12-2P59991 146 aa3.88□□□□□ -1.79
LDLR-211ENST00000560173 ROMO1P60602 79 aa3.88□□□□□ -1.79
LDLR-211ENST00000560173 LUZP6Q538Z0 58 aa3.85□□□□□ -1.79
LDLR-211ENST00000560173 KRTAP2-2Q9BYT5 123 aa3.83□□□□□ -1.8
LDLR-211ENST00000560173 KRTAP2-1Q9BYU5 128 aa3.83□□□□□ -1.8
LDLR-211ENST00000560173 CAMK2N1Q7Z7J9 78 aa3.81□□□□□ -1.8
LDLR-211ENST00000560173 GPR98Q8WXG9 6306 aa3.79□□□□□ -1.8
LDLR-211ENST00000560173 SPRR2EP22531 72 aa3.78□□□□□ -1.8
LDLR-211ENST00000560173 SPRR2BP35325 72 aa3.78□□□□□ -1.8
LDLR-211ENST00000560173 SPRR2AP35326 72 aa3.78□□□□□ -1.8
LDLR-211ENST00000560173 KRTAP10-7P60409 375 aaPredicted RBP3.75□□□□□ -1.81
LDLR-211ENST00000560173 KRTAP10-12P60413 245 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms