RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 CYP4F30PQ9H0H9 118 aa4.9□□□□□ -1.63
CUX1-216ENST00000558469 RBM12B-AS1Q9P1G2 102 aa4.89□□□□□ -1.63
CUX1-216ENST00000558469 A0A0U1RQV1 116 aa4.88□□□□□ -1.63
CUX1-216ENST00000558469 H3BPC8 53 aa4.88□□□□□ -1.63
CUX1-216ENST00000558469 SERP2Q8N6R1 65 aa4.88□□□□□ -1.63
CUX1-216ENST00000558469 MPLKIPQ8TAP9 179 aa4.88□□□□□ -1.63
CUX1-216ENST00000558469 KRTAP19-2Q3LHN2 52 aa4.87□□□□□ -1.63
CUX1-216ENST00000558469 COX6B2Q6YFQ2 88 aa4.87□□□□□ -1.63
CUX1-216ENST00000558469 FAM236DA0A1B0GTK5 79 aa4.86□□□□□ -1.63
CUX1-216ENST00000558469 KRTAP23-1A1A580 65 aa4.86□□□□□ -1.63
CUX1-216ENST00000558469 FAM236CP0DP71 79 aa4.86□□□□□ -1.63
CUX1-216ENST00000558469 C4orf26Q17RF5 130 aa4.85□□□□□ -1.63
CUX1-216ENST00000558469 KLKP1Q107X0 134 aa4.84□□□□□ -1.63
CUX1-216ENST00000558469 ANAPC13Q9BS18 74 aa4.83□□□□□ -1.64
CUX1-216ENST00000558469 COX7CP15954 63 aa4.82□□□□□ -1.64
CUX1-216ENST00000558469 C20orf197Q8N268 126 aa4.82□□□□□ -1.64
CUX1-216ENST00000558469 SNURFQ9Y675 71 aa4.82□□□□□ -1.64
CUX1-216ENST00000558469 H1FX-AS1Q4G0G2 97 aa4.77□□□□□ -1.65
CUX1-216ENST00000558469 FAT4Q6V0I7 4981 aa4.76□□□□□ -1.65
CUX1-216ENST00000558469 MT1HP80294 61 aa4.76□□□□□ -1.65
CUX1-216ENST00000558469 KRTAP5-3Q6L8H2 238 aa4.75□□□□□ -1.65
CUX1-216ENST00000558469 FLGP20930 4061 aaPredicted RBP4.75□□□□□ -1.65
CUX1-216ENST00000558469 CCDC179H3BU77 68 aa4.73□□□□□ -1.65
CUX1-216ENST00000558469 M0R2T5 61 aa4.73□□□□□ -1.65
CUX1-216ENST00000558469 A8MUN3 132 aa4.71□□□□□ -1.66
CUX1-216ENST00000558469 KRTAP15-1Q3LI76 137 aa4.71□□□□□ -1.66
CUX1-216ENST00000558469 CYSTM1Q9H1C7 97 aa4.71□□□□□ -1.66
CUX1-216ENST00000558469 NDUFC1O43677 76 aa4.69□□□□□ -1.66
CUX1-216ENST00000558469 DMAC1Q96GE9 116 aa4.69□□□□□ -1.66
CUX1-216ENST00000558469 S4R3F8 94 aa4.69□□□□□ -1.66
CUX1-216ENST00000558469 H7BZZ5 65 aa4.67□□□□□ -1.66
CUX1-216ENST00000558469 SPANXA2-OT1Q8N9U9 137 aa4.67□□□□□ -1.66
CUX1-216ENST00000558469 LCA10Q71F78 164 aa4.66□□□□□ -1.66
CUX1-216ENST00000558469 ACYP2P14621 99 aa4.65□□□□□ -1.67
CUX1-216ENST00000558469 KRTAP10-6P60371 365 aaPredicted RBP4.62□□□□□ -1.67
CUX1-216ENST00000558469 CSAG1Q6PB30 78 aa4.61□□□□□ -1.67
CUX1-216ENST00000558469 KRTAP9-8Q9BYQ0 159 aa4.61□□□□□ -1.67
CUX1-216ENST00000558469 CHKB-CPT1BH3BT56 60 aa4.57□□□□□ -1.68
CUX1-216ENST00000558469 TMEM258P61165 79 aa4.55□□□□□ -1.68
CUX1-216ENST00000558469 ATP5EP56381 51 aaPredicted RBP4.54□□□□□ -1.68
CUX1-216ENST00000558469 COA5Q86WW8 74 aa4.54□□□□□ -1.68
CUX1-216ENST00000558469 SPTSSBQ8NFR3 76 aa4.53□□□□□ -1.68
CUX1-216ENST00000558469 MT2AP02795 61 aa4.52□□□□□ -1.69
CUX1-216ENST00000558469 KRTAP10-10P60014 251 aa4.5□□□□□ -1.69
CUX1-216ENST00000558469 MT1FP04733 61 aa4.49□□□□□ -1.69
CUX1-216ENST00000558469 H0YAA0 97 aa4.46□□□□□ -1.7
CUX1-216ENST00000558469 ADM2Q7Z4H4 148 aa4.46□□□□□ -1.7
CUX1-216ENST00000558469 SERP1Q9Y6X1 66 aa4.41□□□□□ -1.7
CUX1-216ENST00000558469 P0C880 135 aa4.39□□□□□ -1.71
CUX1-216ENST00000558469 SEC61GP60059 68 aa4.35□□□□□ -1.71
CUX1-216ENST00000558469 CRIPTQ9P021 101 aa4.35□□□□□ -1.71
CUX1-216ENST00000558469 R4GN34 69 aa4.32□□□□□ -1.72
CUX1-216ENST00000558469 A0A1B0GU69 56 aa4.31□□□□□ -1.72
CUX1-216ENST00000558469 SPRR2GQ9BYE4 73 aa4.31□□□□□ -1.72
CUX1-216ENST00000558469 M0QZ58 72 aa4.29□□□□□ -1.72
CUX1-216ENST00000558469 RPS28P62857 69 aaKnown RBP4.29□□□□□ -1.72
CUX1-216ENST00000558469 LINC01558Q9Y6Z2 57 aa4.29□□□□□ -1.72
CUX1-216ENST00000558469 PRR15LQ9BU68 103 aa4.27□□□□□ -1.73
CUX1-216ENST00000558469 SMIM26A0A096LP01 95 aa4.26□□□□□ -1.73
CUX1-216ENST00000558469 A0A1B0GU33 70 aa4.25□□□□□ -1.73
CUX1-216ENST00000558469 Q1T7F1 81 aa4.23□□□□□ -1.73
CUX1-216ENST00000558469 KRTAP19-8Q3LI54 63 aa4.23□□□□□ -1.73
CUX1-216ENST00000558469 KRTAP13-4Q3LI77 160 aa4.23□□□□□ -1.73
CUX1-216ENST00000558469 LINC01554Q52M75 96 aa4.23□□□□□ -1.73
CUX1-216ENST00000558469 V9GYY9 64 aa4.23□□□□□ -1.73
CUX1-216ENST00000558469 Q5VV11 94 aa4.22□□□□□ -1.73
CUX1-216ENST00000558469 USH2AO75445 5202 aa4.2□□□□□ -1.74
CUX1-216ENST00000558469 SPATA8Q6RVD6 105 aa4.2□□□□□ -1.74
CUX1-216ENST00000558469 PSPHP1O15172 72 aa4.19□□□□□ -1.74
CUX1-216ENST00000558469 MT1BP07438 61 aa4.19□□□□□ -1.74
CUX1-216ENST00000558469 A0A0D9SG42 100 aa4.15□□□□□ -1.75
CUX1-216ENST00000558469 PLAC4Q8WY50 150 aa4.15□□□□□ -1.75
CUX1-216ENST00000558469 CRCT1Q9UGL9 99 aa4.15□□□□□ -1.75
CUX1-216ENST00000558469 UQCR11O14957 56 aa4.14□□□□□ -1.75
CUX1-216ENST00000558469 PRO0628Q9UI54 55 aa4.12□□□□□ -1.75
CUX1-216ENST00000558469 A6NN06 94 aa4.11□□□□□ -1.75
CUX1-216ENST00000558469 A8MU10 97 aa4.1□□□□□ -1.75
CUX1-216ENST00000558469 KRTAP19-6Q3LI70 58 aa4.09□□□□□ -1.75
CUX1-216ENST00000558469 LCE1AQ5T7P2 110 aa4.09□□□□□ -1.75
CUX1-216ENST00000558469 SSPOA2VEC9 5147 aa4.09□□□□□ -1.75
CUX1-216ENST00000558469 FSIP2Q5CZC0 6907 aa4.09□□□□□ -1.75
CUX1-216ENST00000558469 MIR22HGQ0VDD5 57 aa4.07□□□□□ -1.76
CUX1-216ENST00000558469 A6NED7 52 aa4.06□□□□□ -1.76
CUX1-216ENST00000558469 SPINT4Q6UDR6 99 aa4.06□□□□□ -1.76
CUX1-216ENST00000558469 KRTAP12-1P59990 96 aa4.05□□□□□ -1.76
CUX1-216ENST00000558469 KRTAP12-2P59991 146 aa4.04□□□□□ -1.76
CUX1-216ENST00000558469 KRTAP10-5P60370 271 aa4.03□□□□□ -1.76
CUX1-216ENST00000558469 CAMK2N1Q7Z7J9 78 aa4.02□□□□□ -1.77
CUX1-216ENST00000558469 MT1XP80297 61 aa4.01□□□□□ -1.77
CUX1-216ENST00000558469 PRO2289Q9P1D8 64 aa4.01□□□□□ -1.77
CUX1-216ENST00000558469 FCGBPQ9Y6R7 5405 aaPredicted RBP3.98□□□□□ -1.77
CUX1-216ENST00000558469 CDC42SE1Q9NRR8 79 aa3.94□□□□□ -1.78
CUX1-216ENST00000558469 K7ERS5 55 aa3.93□□□□□ -1.78
CUX1-216ENST00000558469 PMAIP1Q13794 54 aa3.89□□□□□ -1.79
CUX1-216ENST00000558469 KRTAP10-7P60409 375 aaPredicted RBP3.85□□□□□ -1.79
CUX1-216ENST00000558469 BRK1Q8WUW1 75 aa3.85□□□□□ -1.79
CUX1-216ENST00000558469 C10orf95Q9H7T3 257 aa3.85□□□□□ -1.79
CUX1-216ENST00000558469 KRTAP2-2Q9BYT5 123 aa3.82□□□□□ -1.8
CUX1-216ENST00000558469 KRTAP10-12P60413 245 aa3.81□□□□□ -1.8
CUX1-216ENST00000558469 TNP1P09430 55 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms