RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 KRTAP3-3Q9BYR6 98 aa10.1□□□□□ -0.79
CASC4-204ENST00000557945 NDUFC1O43677 76 aa10.08□□□□□ -0.8
CASC4-204ENST00000557945 ACYP2P14621 99 aa10.04□□□□□ -0.8
CASC4-204ENST00000557945 KRTAP10-10P60014 251 aa10.04□□□□□ -0.8
CASC4-204ENST00000557945 SPANXA2-OT1Q8N9U9 137 aa10.04□□□□□ -0.8
CASC4-204ENST00000557945 MT1FP04733 61 aa10.03□□□□□ -0.8
CASC4-204ENST00000557945 CYSTM1Q9H1C7 97 aa9.99□□□□□ -0.81
CASC4-204ENST00000557945 CCDC179H3BU77 68 aa9.97□□□□□ -0.81
CASC4-204ENST00000557945 LCE2DQ5TA82 110 aaPredicted RBP9.97□□□□□ -0.81
CASC4-204ENST00000557945 KRTAP9-2Q9BYQ4 174 aa9.96□□□□□ -0.82
CASC4-204ENST00000557945 H7BZZ5 65 aa9.94□□□□□ -0.82
CASC4-204ENST00000557945 CHKB-CPT1BH3BT56 60 aa9.89□□□□□ -0.83
CASC4-204ENST00000557945 KRTAP9-3Q9BYQ3 159 aa9.84□□□□□ -0.83
CASC4-204ENST00000557945 SPTSSBQ8NFR3 76 aa9.82□□□□□ -0.84
CASC4-204ENST00000557945 H0YAA0 97 aa9.78□□□□□ -0.84
CASC4-204ENST00000557945 ADM2Q7Z4H4 148 aa9.76□□□□□ -0.85
CASC4-204ENST00000557945 COA5Q86WW8 74 aa9.76□□□□□ -0.85
CASC4-204ENST00000557945 LCE2BO14633 110 aa9.68□□□□□ -0.86
CASC4-204ENST00000557945 ATP5EP56381 51 aaPredicted RBP9.64□□□□□ -0.87
CASC4-204ENST00000557945 CRIPTQ9P021 101 aa9.62□□□□□ -0.87
CASC4-204ENST00000557945 TMEM258P61165 79 aa9.61□□□□□ -0.87
CASC4-204ENST00000557945 P0C880 135 aa9.6□□□□□ -0.87
CASC4-204ENST00000557945 KRTAP19-1Q8IUB9 90 aa9.6□□□□□ -0.87
CASC4-204ENST00000557945 KRTAP3-2Q9BYR7 98 aa9.58□□□□□ -0.88
CASC4-204ENST00000557945 FSIP2Q5CZC0 6907 aa9.57□□□□□ -0.88
CASC4-204ENST00000557945 SPRR2GQ9BYE4 73 aa9.56□□□□□ -0.88
CASC4-204ENST00000557945 USH2AO75445 5202 aa9.53□□□□□ -0.88
CASC4-204ENST00000557945 CRCT1Q9UGL9 99 aa9.51□□□□□ -0.89
CASC4-204ENST00000557945 PCP4P48539 62 aa9.47□□□□□ -0.89
CASC4-204ENST00000557945 R4GN34 69 aa9.47□□□□□ -0.89
CASC4-204ENST00000557945 KRTAP9-6A0A140TA67 174 aa9.45□□□□□ -0.9
CASC4-204ENST00000557945 M0QZ58 72 aa9.42□□□□□ -0.9
CASC4-204ENST00000557945 SEC61GP60059 68 aa9.41□□□□□ -0.9
CASC4-204ENST00000557945 Q5VV11 94 aa9.41□□□□□ -0.9
CASC4-204ENST00000557945 KRTAP19-8Q3LI54 63 aa9.4□□□□□ -0.9
CASC4-204ENST00000557945 SERP1Q9Y6X1 66 aa9.38□□□□□ -0.91
CASC4-204ENST00000557945 SSPOA2VEC9 5147 aa9.35□□□□□ -0.91
CASC4-204ENST00000557945 MT1BP07438 61 aa9.34□□□□□ -0.91
CASC4-204ENST00000557945 LINC01554Q52M75 96 aa9.29□□□□□ -0.92
CASC4-204ENST00000557945 A0A1B0GU69 56 aa9.27□□□□□ -0.93
CASC4-204ENST00000557945 KRTAP19-6Q3LI70 58 aa9.23□□□□□ -0.93
CASC4-204ENST00000557945 A0A1B0GU33 70 aa9.18□□□□□ -0.94
CASC4-204ENST00000557945 KRTAP13-4Q3LI77 160 aa9.18□□□□□ -0.94
CASC4-204ENST00000557945 PLAC4Q8WY50 150 aa9.17□□□□□ -0.94
CASC4-204ENST00000557945 LINC01558Q9Y6Z2 57 aa9.17□□□□□ -0.94
CASC4-204ENST00000557945 PRR15LQ9BU68 103 aa9.16□□□□□ -0.94
CASC4-204ENST00000557945 SPATA8Q6RVD6 105 aa9.08□□□□□ -0.96
CASC4-204ENST00000557945 A6NN06 94 aa9.07□□□□□ -0.96
CASC4-204ENST00000557945 FCGBPQ9Y6R7 5405 aaPredicted RBP9.06□□□□□ -0.96
CASC4-204ENST00000557945 A0A0D9SG42 100 aa9.01□□□□□ -0.97
CASC4-204ENST00000557945 KRTAP10-5P60370 271 aa9.01□□□□□ -0.97
CASC4-204ENST00000557945 SMIM26A0A096LP01 95 aa8.98□□□□□ -0.97
CASC4-204ENST00000557945 V9GYY9 64 aa8.98□□□□□ -0.97
CASC4-204ENST00000557945 RPS28P62857 69 aaKnown RBP8.97□□□□□ -0.97
CASC4-204ENST00000557945 Q1T7F1 81 aa8.94□□□□□ -0.98
CASC4-204ENST00000557945 PRO2289Q9P1D8 64 aa8.92□□□□□ -0.98
CASC4-204ENST00000557945 MT1XP80297 61 aa8.89□□□□□ -0.99
CASC4-204ENST00000557945 PSPHP1O15172 72 aa8.87□□□□□ -0.99
CASC4-204ENST00000557945 A8MU10 97 aa8.86□□□□□ -0.99
CASC4-204ENST00000557945 UQCR11O14957 56 aa8.86□□□□□ -0.99
CASC4-204ENST00000557945 SPINT4Q6UDR6 99 aa8.85□□□□□ -0.99
CASC4-204ENST00000557945 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.82□□□□□ -1
CASC4-204ENST00000557945 CAMK2N1Q7Z7J9 78 aa8.82□□□□□ -1
CASC4-204ENST00000557945 KRTAP12-1P59990 96 aa8.79□□□□□ -1
CASC4-204ENST00000557945 KRTAP12-2P59991 146 aa8.74□□□□□ -1.01
CASC4-204ENST00000557945 MACF1Q9UPN3 7388 aaKnown RBP8.74□□□□□ -1.01
CASC4-204ENST00000557945 MIR22HGQ0VDD5 57 aa8.72□□□□□ -1.01
CASC4-204ENST00000557945 A6NED7 52 aa8.61□□□□□ -1.03
CASC4-204ENST00000557945 KRTAP9-7A8MTY7 169 aa8.55□□□□□ -1.04
CASC4-204ENST00000557945 SYNE2Q8WXH0 6885 aaKnown RBP8.54□□□□□ -1.04
CASC4-204ENST00000557945 KRTAP10-7P60409 375 aaPredicted RBP8.52□□□□□ -1.05
CASC4-204ENST00000557945 K7ERS5 55 aa8.46□□□□□ -1.06
CASC4-204ENST00000557945 KRTAP10-12P60413 245 aa8.44□□□□□ -1.06
CASC4-204ENST00000557945 KRTAP6-3Q3LI67 103 aa8.42□□□□□ -1.06
CASC4-204ENST00000557945 KMT2DO14686 5537 aa8.38□□□□□ -1.07
CASC4-204ENST00000557945 C10orf95Q9H7T3 257 aa8.36□□□□□ -1.07
CASC4-204ENST00000557945 KRTAP4-8A0A0G2JLE6 195 aa8.35□□□□□ -1.07
CASC4-204ENST00000557945 KRTAP4-8Q9BYQ9 185 aa8.35□□□□□ -1.07
CASC4-204ENST00000557945 KRTAP8-1Q8IUC2 63 aa8.34□□□□□ -1.07
CASC4-204ENST00000557945 CDC42SE1Q9NRR8 79 aa8.31□□□□□ -1.08
CASC4-204ENST00000557945 TNP1P09430 55 aa8.25□□□□□ -1.09
CASC4-204ENST00000557945 KRTAP5-9P26371 169 aa8.23□□□□□ -1.09
CASC4-204ENST00000557945 SPRR2FQ96RM1 72 aa8.19□□□□□ -1.1
CASC4-204ENST00000557945 MUC12Q9UKN1 5478 aa8.06□□□□□ -1.12
CASC4-204ENST00000557945 KRTAP25-1Q3LHN0 102 aa8.04□□□□□ -1.12
CASC4-204ENST00000557945 BRK1Q8WUW1 75 aa8.03□□□□□ -1.12
CASC4-204ENST00000557945 LCE3AQ5TA76 89 aa8.01□□□□□ -1.13
CASC4-204ENST00000557945 ROMO1P60602 79 aa7.97□□□□□ -1.13
CASC4-204ENST00000557945 NEBP20929 6669 aa7.96□□□□□ -1.13
CASC4-204ENST00000557945 SPRR2EP22531 72 aa7.94□□□□□ -1.14
CASC4-204ENST00000557945 SPRR2BP35325 72 aa7.94□□□□□ -1.14
CASC4-204ENST00000557945 SPRR2AP35326 72 aa7.94□□□□□ -1.14
CASC4-204ENST00000557945 KRTAP19-7Q3SYF9 63 aa7.94□□□□□ -1.14
CASC4-204ENST00000557945 KRTAP19-5Q3LI72 72 aa7.92□□□□□ -1.14
CASC4-204ENST00000557945 MDN1Q9NU22 5596 aa7.91□□□□□ -1.14
CASC4-204ENST00000557945 LCE1AQ5T7P2 110 aa7.87□□□□□ -1.15
CASC4-204ENST00000557945 MT1EP04732 61 aa7.85□□□□□ -1.15
CASC4-204ENST00000557945 KRTAP23-1A1A580 65 aa7.72□□□□□ -1.17
CASC4-204ENST00000557945 KRTAP12-3P60328 96 aa7.71□□□□□ -1.18
CASC4-204ENST00000557945 KRTAP19-3Q7Z4W3 81 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms