RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 FAM236CP0DP71 79 aa4.17□□□□□ -1.74
CCDC88C-214ENST00000557507 KRTAP4-8A0A0G2JLE6 195 aa4.16□□□□□ -1.74
CCDC88C-214ENST00000557507 Q75L30 129 aa4.16□□□□□ -1.74
CCDC88C-214ENST00000557507 H7BZZ5 65 aa4.15□□□□□ -1.75
CCDC88C-214ENST00000557507 RPS28P62857 69 aaKnown RBP4.15□□□□□ -1.75
CCDC88C-214ENST00000557507 ATP11AUNQ6ZP68 121 aa4.15□□□□□ -1.75
CCDC88C-214ENST00000557507 C1orf64Q8NEQ6 169 aa4.15□□□□□ -1.75
CCDC88C-214ENST00000557507 LINC00208Q96KT6 92 aa4.15□□□□□ -1.75
CCDC88C-214ENST00000557507 KRTAP9-3Q9BYQ3 159 aa4.15□□□□□ -1.75
CCDC88C-214ENST00000557507 LOC101927531A0A1B0GV80 90 aa4.14□□□□□ -1.75
CCDC88C-214ENST00000557507 Q8N9P0 234 aaPredicted RBP4.12□□□□□ -1.75
CCDC88C-214ENST00000557507 SPANXA2-OT1Q8N9U9 137 aa4.12□□□□□ -1.75
CCDC88C-214ENST00000557507 ZCCHC13Q8WW36 166 aaKnown RBP4.12□□□□□ -1.75
CCDC88C-214ENST00000557507 SERP1Q9Y6X1 66 aa4.11□□□□□ -1.75
CCDC88C-214ENST00000557507 KRTAP10-10P60014 251 aa4.09□□□□□ -1.75
CCDC88C-214ENST00000557507 KRTAP19-6Q3LI70 58 aa4.08□□□□□ -1.76
CCDC88C-214ENST00000557507 NOTCH2NLQ7Z3S9 236 aa4.08□□□□□ -1.76
CCDC88C-214ENST00000557507 CYSTM1Q9H1C7 97 aa4.08□□□□□ -1.76
CCDC88C-214ENST00000557507 C20orf166-AS1Q96NR2 134 aa4.07□□□□□ -1.76
CCDC88C-214ENST00000557507 CYP4F30PQ9H0H9 118 aa4.07□□□□□ -1.76
CCDC88C-214ENST00000557507 NEBP20929 6669 aa4.06□□□□□ -1.76
CCDC88C-214ENST00000557507 A8MUU9 505 aa4.06□□□□□ -1.76
CCDC88C-214ENST00000557507 KRTAP16-1A8MUX0 517 aa4.05□□□□□ -1.76
CCDC88C-214ENST00000557507 KRTAP6-3Q3LI67 103 aa4.05□□□□□ -1.76
CCDC88C-214ENST00000557507 LCE1DQ5T752 114 aa4.05□□□□□ -1.76
CCDC88C-214ENST00000557507 SMIM26A0A096LP01 95 aa4.03□□□□□ -1.76
CCDC88C-214ENST00000557507 KRTAP4-7Q9BYR0 210 aa4.03□□□□□ -1.76
CCDC88C-214ENST00000557507 IGKV2-30P06310 120 aa4.02□□□□□ -1.77
CCDC88C-214ENST00000557507 Q5W150 140 aa4.02□□□□□ -1.77
CCDC88C-214ENST00000557507 C7orf65Q6ZTY9 151 aa4.02□□□□□ -1.77
CCDC88C-214ENST00000557507 MPLKIPQ8TAP9 179 aa4.02□□□□□ -1.77
CCDC88C-214ENST00000557507 HRES1P13985 223 aa4.01□□□□□ -1.77
CCDC88C-214ENST00000557507 V9GYY9 64 aa4.01□□□□□ -1.77
CCDC88C-214ENST00000557507 ACYP2P14621 99 aa4□□□□□ -1.77
CCDC88C-214ENST00000557507 IGKV2D-30A0A075B6S6 120 aa3.99□□□□□ -1.77
CCDC88C-214ENST00000557507 A8MUN3 132 aa3.98□□□□□ -1.77
CCDC88C-214ENST00000557507 RBM12B-AS1Q9P1G2 102 aa3.98□□□□□ -1.77
CCDC88C-214ENST00000557507 MUC12Q9UKN1 5478 aa3.96□□□□□ -1.77
CCDC88C-214ENST00000557507 CHKB-CPT1BH3BT56 60 aa3.96□□□□□ -1.78
CCDC88C-214ENST00000557507 COA5Q86WW8 74 aa3.94□□□□□ -1.78
CCDC88C-214ENST00000557507 SPTSSBQ8NFR3 76 aa3.94□□□□□ -1.78
CCDC88C-214ENST00000557507 DMAC1Q96GE9 116 aa3.94□□□□□ -1.78
CCDC88C-214ENST00000557507 KRTAP4-9Q9BYQ8 210 aa3.93□□□□□ -1.78
CCDC88C-214ENST00000557507 SPINK7P58062 85 aa3.91□□□□□ -1.78
CCDC88C-214ENST00000557507 Q1T7F1 81 aa3.91□□□□□ -1.78
CCDC88C-214ENST00000557507 KRTAP20-1Q3LI63 56 aa3.89□□□□□ -1.79
CCDC88C-214ENST00000557507 PRR15LQ9BU68 103 aa3.88□□□□□ -1.79
CCDC88C-214ENST00000557507 C4orf26Q17RF5 130 aa3.85□□□□□ -1.79
CCDC88C-214ENST00000557507 KRTAP4-2Q9BYR5 136 aa3.85□□□□□ -1.79
CCDC88C-214ENST00000557507 SEC61GP60059 68 aa3.84□□□□□ -1.79
CCDC88C-214ENST00000557507 KRTAP19-4Q3LI73 84 aa3.84□□□□□ -1.79
CCDC88C-214ENST00000557507 LCE4AQ5TA78 99 aa3.83□□□□□ -1.8
CCDC88C-214ENST00000557507 LINC01558Q9Y6Z2 57 aa3.83□□□□□ -1.8
CCDC88C-214ENST00000557507 A0A1B0GU69 56 aa3.79□□□□□ -1.8
CCDC88C-214ENST00000557507 KMT2DO14686 5537 aa3.78□□□□□ -1.8
CCDC88C-214ENST00000557507 A6NN06 94 aa3.78□□□□□ -1.8
CCDC88C-214ENST00000557507 PSPHP1O15172 72 aa3.78□□□□□ -1.8
CCDC88C-214ENST00000557507 KRTAP4-11Q9BYQ6 195 aa3.78□□□□□ -1.8
CCDC88C-214ENST00000557507 KRTAP5-9P26371 169 aa3.77□□□□□ -1.81
CCDC88C-214ENST00000557507 MDN1Q9NU22 5596 aa3.77□□□□□ -1.81
CCDC88C-214ENST00000557507 A6NED7 52 aa3.75□□□□□ -1.81
CCDC88C-214ENST00000557507 MT1BP07438 61 aa3.75□□□□□ -1.81
CCDC88C-214ENST00000557507 H1FX-AS1Q4G0G2 97 aa3.75□□□□□ -1.81
CCDC88C-214ENST00000557507 BRK1Q8WUW1 75 aa3.74□□□□□ -1.81
CCDC88C-214ENST00000557507 S4R3F8 94 aa3.74□□□□□ -1.81
CCDC88C-214ENST00000557507 Q5VV11 94 aa3.73□□□□□ -1.81
CCDC88C-214ENST00000557507 PRO0628Q9UI54 55 aa3.72□□□□□ -1.81
CCDC88C-214ENST00000557507 UQCR11O14957 56 aa3.71□□□□□ -1.82
CCDC88C-214ENST00000557507 LCE5AQ5TCM9 118 aa3.71□□□□□ -1.82
CCDC88C-214ENST00000557507 KRTAP3-1Q9BYR8 98 aa3.71□□□□□ -1.82
CCDC88C-214ENST00000557507 KRTAP2-3P0C7H8 128 aa3.7□□□□□ -1.82
CCDC88C-214ENST00000557507 KRTAP10-5P60370 271 aa3.7□□□□□ -1.82
CCDC88C-214ENST00000557507 KRTAP2-4Q9BYR9 128 aa3.7□□□□□ -1.82
CCDC88C-214ENST00000557507 KRTAP19-8Q3LI54 63 aa3.68□□□□□ -1.82
CCDC88C-214ENST00000557507 CSAG1Q6PB30 78 aa3.68□□□□□ -1.82
CCDC88C-214ENST00000557507 CDC42SE1Q9NRR8 79 aa3.68□□□□□ -1.82
CCDC88C-214ENST00000557507 H3BS24 57 aa3.66□□□□□ -1.82
CCDC88C-214ENST00000557507 LCA10Q71F78 164 aa3.66□□□□□ -1.82
CCDC88C-214ENST00000557507 SPRR2GQ9BYE4 73 aa3.65□□□□□ -1.83
CCDC88C-214ENST00000557507 MIR22HGQ0VDD5 57 aa3.64□□□□□ -1.83
CCDC88C-214ENST00000557507 A0A1B0GU33 70 aa3.63□□□□□ -1.83
CCDC88C-214ENST00000557507 SPATA8Q6RVD6 105 aa3.62□□□□□ -1.83
CCDC88C-214ENST00000557507 K7ERS5 55 aa3.61□□□□□ -1.83
CCDC88C-214ENST00000557507 SPRR2EP22531 72 aa3.61□□□□□ -1.83
CCDC88C-214ENST00000557507 SPRR2BP35325 72 aa3.61□□□□□ -1.83
CCDC88C-214ENST00000557507 SPRR2AP35326 72 aa3.61□□□□□ -1.83
CCDC88C-214ENST00000557507 H0YAA0 97 aa3.59□□□□□ -1.83
CCDC88C-214ENST00000557507 SPRR2FQ96RM1 72 aa3.59□□□□□ -1.83
CCDC88C-214ENST00000557507 PMAIP1Q13794 54 aa3.56□□□□□ -1.84
CCDC88C-214ENST00000557507 KRTAP2-2Q9BYT5 123 aa3.56□□□□□ -1.84
CCDC88C-214ENST00000557507 KRTAP2-1Q9BYU5 128 aa3.56□□□□□ -1.84
CCDC88C-214ENST00000557507 ADM2Q7Z4H4 148 aa3.55□□□□□ -1.84
CCDC88C-214ENST00000557507 M0QZ58 72 aa3.54□□□□□ -1.84
CCDC88C-214ENST00000557507 SVIPQ8NHG7 77 aa3.54□□□□□ -1.84
CCDC88C-214ENST00000557507 LCE1AQ5T7P2 110 aa3.53□□□□□ -1.84
CCDC88C-214ENST00000557507 SPRR2DP22532 72 aa3.48□□□□□ -1.85
CCDC88C-214ENST00000557507 CRIPTQ9P021 101 aa3.48□□□□□ -1.85
CCDC88C-214ENST00000557507 R4GN34 69 aa3.48□□□□□ -1.85
CCDC88C-214ENST00000557507 GPR98Q8WXG9 6306 aa3.48□□□□□ -1.85
CCDC88C-214ENST00000557507 KRTAP8-1Q8IUC2 63 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms