RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 CASC2Q6XLA1 102 aa5.16□□□□□ -1.58
CCDC88C-213ENST00000557455 OCR1Q9BZK8 76 aa5.15□□□□□ -1.59
CCDC88C-213ENST00000557455 C20orf197Q8N268 126 aa5.14□□□□□ -1.59
CCDC88C-213ENST00000557455 KRTAP6-3Q3LI67 103 aa5.13□□□□□ -1.59
CCDC88C-213ENST00000557455 KLKP1Q107X0 134 aa5.11□□□□□ -1.59
CCDC88C-213ENST00000557455 C4orf26Q17RF5 130 aa5.11□□□□□ -1.59
CCDC88C-213ENST00000557455 NDUFC1O43677 76 aa5.1□□□□□ -1.59
CCDC88C-213ENST00000557455 TMEM258P61165 79 aa5.1□□□□□ -1.59
CCDC88C-213ENST00000557455 C5orf47Q569G3 176 aa5.09□□□□□ -1.59
CCDC88C-213ENST00000557455 MP68P56378 58 aa5.08□□□□□ -1.6
CCDC88C-213ENST00000557455 SNURFQ9Y675 71 aa5.08□□□□□ -1.6
CCDC88C-213ENST00000557455 TP53AIP1Q9HCN2 124 aa5.07□□□□□ -1.6
CCDC88C-213ENST00000557455 LOC100996750A0A140TA64 210 aa5.06□□□□□ -1.6
CCDC88C-213ENST00000557455 KRTAP4-6Q9BYQ5 205 aa5.06□□□□□ -1.6
CCDC88C-213ENST00000557455 CYSTM1Q9H1C7 97 aa5.06□□□□□ -1.6
CCDC88C-213ENST00000557455 H3BPC8 53 aa5.05□□□□□ -1.6
CCDC88C-213ENST00000557455 H0Y9P7 68 aa5.04□□□□□ -1.6
CCDC88C-213ENST00000557455 ATP5EP56381 51 aaPredicted RBP5.04□□□□□ -1.6
CCDC88C-213ENST00000557455 TRAV22A0A0B4J277 110 aa5.03□□□□□ -1.6
CCDC88C-213ENST00000557455 H7BZZ5 65 aa5.03□□□□□ -1.6
CCDC88C-213ENST00000557455 S4R3F8 94 aa5.03□□□□□ -1.6
CCDC88C-213ENST00000557455 A6NN06 94 aa5.02□□□□□ -1.61
CCDC88C-213ENST00000557455 KRTAP3-1Q9BYR8 98 aa5.02□□□□□ -1.61
CCDC88C-213ENST00000557455 Q5VV11 94 aa5.01□□□□□ -1.61
CCDC88C-213ENST00000557455 CSAG1Q6PB30 78 aa5.01□□□□□ -1.61
CCDC88C-213ENST00000557455 C1orf64Q8NEQ6 169 aa5□□□□□ -1.61
CCDC88C-213ENST00000557455 LINC00208Q96KT6 92 aa5□□□□□ -1.61
CCDC88C-213ENST00000557455 MT1BP07438 61 aa4.99□□□□□ -1.61
CCDC88C-213ENST00000557455 LCA10Q71F78 164 aa4.99□□□□□ -1.61
CCDC88C-213ENST00000557455 SPRR2GQ9BYE4 73 aa4.98□□□□□ -1.61
CCDC88C-213ENST00000557455 MUC12Q9UKN1 5478 aa4.98□□□□□ -1.61
CCDC88C-213ENST00000557455 KRTAP19-8Q3LI54 63 aa4.96□□□□□ -1.62
CCDC88C-213ENST00000557455 LOC101927531A0A1B0GV80 90 aa4.94□□□□□ -1.62
CCDC88C-213ENST00000557455 RPS28P62857 69 aaKnown RBP4.94□□□□□ -1.62
CCDC88C-213ENST00000557455 NEBP20929 6669 aa4.93□□□□□ -1.62
CCDC88C-213ENST00000557455 SERP1Q9Y6X1 66 aa4.93□□□□□ -1.62
CCDC88C-213ENST00000557455 KRTAP10-5P60370 271 aa4.92□□□□□ -1.62
CCDC88C-213ENST00000557455 SPANXA2-OT1Q8N9U9 137 aa4.91□□□□□ -1.62
CCDC88C-213ENST00000557455 CYP4F30PQ9H0H9 118 aa4.89□□□□□ -1.63
CCDC88C-213ENST00000557455 CRIPTQ9P021 101 aa4.86□□□□□ -1.63
CCDC88C-213ENST00000557455 KRTAP5-9P26371 169 aa4.83□□□□□ -1.64
CCDC88C-213ENST00000557455 KRTAP20-1Q3LI63 56 aa4.83□□□□□ -1.64
CCDC88C-213ENST00000557455 MDN1Q9NU22 5596 aa4.81□□□□□ -1.64
CCDC88C-213ENST00000557455 SMIM26A0A096LP01 95 aa4.81□□□□□ -1.64
CCDC88C-213ENST00000557455 KMT2DO14686 5537 aa4.81□□□□□ -1.64
CCDC88C-213ENST00000557455 COA5Q86WW8 74 aa4.76□□□□□ -1.65
CCDC88C-213ENST00000557455 H0YAA0 97 aa4.75□□□□□ -1.65
CCDC88C-213ENST00000557455 ACYP2P14621 99 aa4.74□□□□□ -1.65
CCDC88C-213ENST00000557455 DMAC1Q96GE9 116 aa4.74□□□□□ -1.65
CCDC88C-213ENST00000557455 A8MUN3 132 aa4.71□□□□□ -1.66
CCDC88C-213ENST00000557455 ADM2Q7Z4H4 148 aa4.71□□□□□ -1.66
CCDC88C-213ENST00000557455 V9GYY9 64 aa4.71□□□□□ -1.66
CCDC88C-213ENST00000557455 CHKB-CPT1BH3BT56 60 aa4.7□□□□□ -1.66
CCDC88C-213ENST00000557455 PRO2289Q9P1D8 64 aa4.69□□□□□ -1.66
CCDC88C-213ENST00000557455 Q1T7F1 81 aa4.68□□□□□ -1.66
CCDC88C-213ENST00000557455 SPRR2FQ96RM1 72 aa4.68□□□□□ -1.66
CCDC88C-213ENST00000557455 KRTAP2-3P0C7H8 128 aa4.67□□□□□ -1.66
CCDC88C-213ENST00000557455 KRTAP2-4Q9BYR9 128 aa4.67□□□□□ -1.66
CCDC88C-213ENST00000557455 PLAC4Q8WY50 150 aa4.66□□□□□ -1.66
CCDC88C-213ENST00000557455 MT1XP80297 61 aa4.65□□□□□ -1.67
CCDC88C-213ENST00000557455 SPRR2EP22531 72 aa4.64□□□□□ -1.67
CCDC88C-213ENST00000557455 SPRR2BP35325 72 aa4.64□□□□□ -1.67
CCDC88C-213ENST00000557455 SPRR2AP35326 72 aa4.64□□□□□ -1.67
CCDC88C-213ENST00000557455 KRTAP4-8Q9BYQ9 185 aa4.62□□□□□ -1.67
CCDC88C-213ENST00000557455 KRTAP8-1Q8IUC2 63 aa4.61□□□□□ -1.67
CCDC88C-213ENST00000557455 SPTSSBQ8NFR3 76 aa4.61□□□□□ -1.67
CCDC88C-213ENST00000557455 R4GN34 69 aa4.61□□□□□ -1.67
CCDC88C-213ENST00000557455 PRR15LQ9BU68 103 aa4.6□□□□□ -1.67
CCDC88C-213ENST00000557455 LINC01558Q9Y6Z2 57 aa4.59□□□□□ -1.67
CCDC88C-213ENST00000557455 PSPHP1O15172 72 aa4.58□□□□□ -1.68
CCDC88C-213ENST00000557455 P0C880 135 aa4.57□□□□□ -1.68
CCDC88C-213ENST00000557455 KRTAP12-2P59991 146 aa4.57□□□□□ -1.68
CCDC88C-213ENST00000557455 M0QZ58 72 aa4.56□□□□□ -1.68
CCDC88C-213ENST00000557455 LCE1AQ5T7P2 110 aa4.54□□□□□ -1.68
CCDC88C-213ENST00000557455 SVIPQ8NHG7 77 aa4.54□□□□□ -1.68
CCDC88C-213ENST00000557455 A0A1B0GU69 56 aa4.52□□□□□ -1.69
CCDC88C-213ENST00000557455 LINC01554Q52M75 96 aa4.52□□□□□ -1.69
CCDC88C-213ENST00000557455 KRTAP2-2Q9BYT5 123 aa4.51□□□□□ -1.69
CCDC88C-213ENST00000557455 KRTAP2-1Q9BYU5 128 aa4.51□□□□□ -1.69
CCDC88C-213ENST00000557455 KRTAP4-8A0A0G2JLE6 195 aa4.5□□□□□ -1.69
CCDC88C-213ENST00000557455 SEC61GP60059 68 aa4.5□□□□□ -1.69
CCDC88C-213ENST00000557455 BRK1Q8WUW1 75 aa4.5□□□□□ -1.69
CCDC88C-213ENST00000557455 A6NED7 52 aa4.48□□□□□ -1.69
CCDC88C-213ENST00000557455 SPRR2DP22532 72 aa4.48□□□□□ -1.69
CCDC88C-213ENST00000557455 KRTAP4-12Q9BQ66 201 aa4.46□□□□□ -1.7
CCDC88C-213ENST00000557455 PRO0628Q9UI54 55 aa4.44□□□□□ -1.7
CCDC88C-213ENST00000557455 KRTAP10-7P60409 375 aaPredicted RBP4.43□□□□□ -1.7
CCDC88C-213ENST00000557455 KRTAP10-12P60413 245 aa4.42□□□□□ -1.7
CCDC88C-213ENST00000557455 LCE3BQ5TA77 95 aa4.41□□□□□ -1.7
CCDC88C-213ENST00000557455 CDC42SE1Q9NRR8 79 aa4.41□□□□□ -1.7
CCDC88C-213ENST00000557455 UQCR11O14957 56 aa4.4□□□□□ -1.71
CCDC88C-213ENST00000557455 MIR22HGQ0VDD5 57 aa4.35□□□□□ -1.71
CCDC88C-213ENST00000557455 A0A1B0GU33 70 aa4.33□□□□□ -1.72
CCDC88C-213ENST00000557455 SPATA8Q6RVD6 105 aa4.33□□□□□ -1.72
CCDC88C-213ENST00000557455 KRTAP9-9Q9BYP9 154 aa4.33□□□□□ -1.72
CCDC88C-213ENST00000557455 KRTAP9-4Q9BYQ2 154 aa4.33□□□□□ -1.72
CCDC88C-213ENST00000557455 A8MU10 97 aa4.3□□□□□ -1.72
CCDC88C-213ENST00000557455 PMAIP1Q13794 54 aa4.24□□□□□ -1.73
CCDC88C-213ENST00000557455 CAMK2N1Q7Z7J9 78 aa4.22□□□□□ -1.73
CCDC88C-213ENST00000557455 K7ERS5 55 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms