RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 C9orf92A6NGG3 77 aa6.9□□□□□ -1.3
SHMT2-229ENST00000557348 MT1HL1P0DM35 61 aa6.88□□□□□ -1.31
SHMT2-229ENST00000557348 DMBT1Q9UGM3 2413 aaPredicted RBP6.83□□□□□ -1.32
SHMT2-229ENST00000557348 ADM2Q7Z4H4 148 aa6.83□□□□□ -1.32
SHMT2-229ENST00000557348 MYCBP2O75592 4640 aa6.8□□□□□ -1.32
SHMT2-229ENST00000557348 CSAG1Q6PB30 78 aa6.8□□□□□ -1.32
SHMT2-229ENST00000557348 J3QL48 77 aa6.78□□□□□ -1.32
SHMT2-229ENST00000557348 RPL37P61927 97 aaKnown RBP6.77□□□□□ -1.32
SHMT2-229ENST00000557348 TPRXLQ17RH7 258 aa6.75□□□□□ -1.33
SHMT2-229ENST00000557348 TNXBP22105 4242 aa6.75□□□□□ -1.33
SHMT2-229ENST00000557348 XP32Q5T750 250 aa6.74□□□□□ -1.33
SHMT2-229ENST00000557348 HERC1Q15751 4861 aa6.72□□□□□ -1.33
SHMT2-229ENST00000557348 H3BS24 57 aa6.71□□□□□ -1.33
SHMT2-229ENST00000557348 KRTAP25-1Q3LHN0 102 aa6.71□□□□□ -1.33
SHMT2-229ENST00000557348 LRP1Q07954 4544 aaKnown RBP6.69□□□□□ -1.34
SHMT2-229ENST00000557348 K7ERS5 55 aa6.69□□□□□ -1.34
SHMT2-229ENST00000557348 FAT3Q8TDW7 4589 aa6.69□□□□□ -1.34
SHMT2-229ENST00000557348 A0A1B0GU33 70 aa6.65□□□□□ -1.35
SHMT2-229ENST00000557348 H0YAA0 97 aa6.62□□□□□ -1.35
SHMT2-229ENST00000557348 ROMO1P60602 79 aa6.61□□□□□ -1.35
SHMT2-229ENST00000557348 H1FX-AS1Q4G0G2 97 aa6.61□□□□□ -1.35
SHMT2-229ENST00000557348 COX6B2Q6YFQ2 88 aa6.61□□□□□ -1.35
SHMT2-229ENST00000557348 SEC61BP60468 96 aaKnown RBP6.53□□□□□ -1.36
SHMT2-229ENST00000557348 KRTAP3-1Q9BYR8 98 aa6.52□□□□□ -1.37
SHMT2-229ENST00000557348 HMCN2Q8NDA2 5059 aa6.48□□□□□ -1.37
SHMT2-229ENST00000557348 S4R3F8 94 aa6.39□□□□□ -1.39
SHMT2-229ENST00000557348 LRP2P98164 4655 aa6.31□□□□□ -1.4
SHMT2-229ENST00000557348 UBR4Q5T4S7 5183 aa6.31□□□□□ -1.4
SHMT2-229ENST00000557348 KRTAP3-3Q9BYR6 98 aa6.3□□□□□ -1.4
SHMT2-229ENST00000557348 P0C880 135 aa6.27□□□□□ -1.41
SHMT2-229ENST00000557348 KRTAP10-6P60371 365 aaPredicted RBP6.23□□□□□ -1.41
SHMT2-229ENST00000557348 CRIPTQ9P021 101 aa6.23□□□□□ -1.41
SHMT2-229ENST00000557348 SPINT4Q6UDR6 99 aa6.23□□□□□ -1.41
SHMT2-229ENST00000557348 LPAP08519 4548 aa6.19□□□□□ -1.42
SHMT2-229ENST00000557348 KRTAP4-1Q9BYQ7 146 aa6.18□□□□□ -1.42
SHMT2-229ENST00000557348 KRTAP15-1Q3LI76 137 aa6.17□□□□□ -1.42
SHMT2-229ENST00000557348 KRTAP3-2Q9BYR7 98 aa6.15□□□□□ -1.42
SHMT2-229ENST00000557348 RNF213Q63HN8 5207 aa6.14□□□□□ -1.43
SHMT2-229ENST00000557348 MUC17Q685J3 4493 aa6.11□□□□□ -1.43
SHMT2-229ENST00000557348 M0QZ58 72 aa6.1□□□□□ -1.43
SHMT2-229ENST00000557348 KRTAP19-2Q3LHN2 52 aa6.08□□□□□ -1.44
SHMT2-229ENST00000557348 KRTAP13-4Q3LI77 160 aa6.08□□□□□ -1.44
SHMT2-229ENST00000557348 A0A0D9SG42 100 aa6.04□□□□□ -1.44
SHMT2-229ENST00000557348 NDUFAF8A1L188 74 aa6.01□□□□□ -1.45
SHMT2-229ENST00000557348 KRTAP12-1P59990 96 aa6□□□□□ -1.45
SHMT2-229ENST00000557348 KRTAP12-2P59991 146 aa5.97□□□□□ -1.45
SHMT2-229ENST00000557348 C10orf95Q9H7T3 257 aa5.94□□□□□ -1.46
SHMT2-229ENST00000557348 R4GN34 69 aa5.92□□□□□ -1.46
SHMT2-229ENST00000557348 MUC2Q02817 5179 aa5.92□□□□□ -1.46
SHMT2-229ENST00000557348 LCE2CQ5TA81 110 aa5.88□□□□□ -1.47
SHMT2-229ENST00000557348 FAT4Q6V0I7 4981 aa5.83□□□□□ -1.48
SHMT2-229ENST00000557348 PP632Q6XCG6 107 aa5.82□□□□□ -1.48
SHMT2-229ENST00000557348 FLGP20930 4061 aaPredicted RBP5.82□□□□□ -1.48
SHMT2-229ENST00000557348 M0R2T5 61 aa5.8□□□□□ -1.48
SHMT2-229ENST00000557348 LCE2AQ5TA79 106 aaPredicted RBP5.8□□□□□ -1.48
SHMT2-229ENST00000557348 MT1HP80294 61 aa5.78□□□□□ -1.48
SHMT2-229ENST00000557348 PLAC4Q8WY50 150 aa5.77□□□□□ -1.49
SHMT2-229ENST00000557348 LORP23490 312 aaPredicted RBP5.72□□□□□ -1.49
SHMT2-229ENST00000557348 LUZP6Q538Z0 58 aa5.69□□□□□ -1.5
SHMT2-229ENST00000557348 A0A0A0MQY5 61 aa5.66□□□□□ -1.5
SHMT2-229ENST00000557348 KRTAP9-2Q9BYQ4 174 aa5.66□□□□□ -1.5
SHMT2-229ENST00000557348 KRTAP23-1A1A580 65 aa5.65□□□□□ -1.51
SHMT2-229ENST00000557348 SPRR2GQ9BYE4 73 aa5.63□□□□□ -1.51
SHMT2-229ENST00000557348 MT2AP02795 61 aa5.59□□□□□ -1.52
SHMT2-229ENST00000557348 KRTAP10-10P60014 251 aa5.59□□□□□ -1.52
SHMT2-229ENST00000557348 KRTAP9-8Q9BYQ0 159 aa5.58□□□□□ -1.52
SHMT2-229ENST00000557348 CAMK2N1Q7Z7J9 78 aa5.57□□□□□ -1.52
SHMT2-229ENST00000557348 MT1FP04733 61 aa5.53□□□□□ -1.52
SHMT2-229ENST00000557348 KRTAP19-1Q8IUB9 90 aa5.52□□□□□ -1.53
SHMT2-229ENST00000557348 LCE2DQ5TA82 110 aaPredicted RBP5.5□□□□□ -1.53
SHMT2-229ENST00000557348 KRTAP9-6A0A140TA67 174 aa5.47□□□□□ -1.53
SHMT2-229ENST00000557348 KRTAP19-8Q3LI54 63 aa5.44□□□□□ -1.54
SHMT2-229ENST00000557348 SPRR5A0A1B0GTR4 108 aa5.43□□□□□ -1.54
SHMT2-229ENST00000557348 TNP1P09430 55 aa5.38□□□□□ -1.55
SHMT2-229ENST00000557348 KRTAP9-3Q9BYQ3 159 aa5.38□□□□□ -1.55
SHMT2-229ENST00000557348 CRCT1Q9UGL9 99 aa5.35□□□□□ -1.55
SHMT2-229ENST00000557348 MT1BP07438 61 aa5.29□□□□□ -1.56
SHMT2-229ENST00000557348 FSIP2Q5CZC0 6907 aa5.26□□□□□ -1.57
SHMT2-229ENST00000557348 PRO2289Q9P1D8 64 aa5.24□□□□□ -1.57
SHMT2-229ENST00000557348 INE1O15225 51 aa5.18□□□□□ -1.58
SHMT2-229ENST00000557348 LCE2BO14633 110 aa5.16□□□□□ -1.58
SHMT2-229ENST00000557348 KRTAP10-5P60370 271 aa5.16□□□□□ -1.58
SHMT2-229ENST00000557348 MT1XP80297 61 aa5.16□□□□□ -1.58
SHMT2-229ENST00000557348 USH2AO75445 5202 aa5.1□□□□□ -1.59
SHMT2-229ENST00000557348 SSPOA2VEC9 5147 aa5.04□□□□□ -1.6
SHMT2-229ENST00000557348 KRTAP10-12P60413 245 aa5.02□□□□□ -1.61
SHMT2-229ENST00000557348 LCE3AQ5TA76 89 aa4.99□□□□□ -1.61
SHMT2-229ENST00000557348 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.98□□□□□ -1.61
SHMT2-229ENST00000557348 KRTAP8-1Q8IUC2 63 aa4.96□□□□□ -1.61
SHMT2-229ENST00000557348 FCGBPQ9Y6R7 5405 aaPredicted RBP4.94□□□□□ -1.62
SHMT2-229ENST00000557348 KRTAP10-7P60409 375 aaPredicted RBP4.93□□□□□ -1.62
SHMT2-229ENST00000557348 KRTAP9-7A8MTY7 169 aa4.92□□□□□ -1.62
SHMT2-229ENST00000557348 KRTAP19-6Q3LI70 58 aa4.91□□□□□ -1.62
SHMT2-229ENST00000557348 KRTAP12-3P60328 96 aa4.84□□□□□ -1.63
SHMT2-229ENST00000557348 MACF1Q9UPN3 7388 aaKnown RBP4.74□□□□□ -1.65
SHMT2-229ENST00000557348 KRTAP19-5Q3LI72 72 aa4.7□□□□□ -1.66
SHMT2-229ENST00000557348 KRTAP19-4Q3LI73 84 aa4.69□□□□□ -1.66
SHMT2-229ENST00000557348 SYNE2Q8WXH0 6885 aaKnown RBP4.67□□□□□ -1.66
SHMT2-229ENST00000557348 KRTAP6-3Q3LI67 103 aa4.67□□□□□ -1.66
SHMT2-229ENST00000557348 KRTAP4-8A0A0G2JLE6 195 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 204 ms