RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 A8MUN3 132 aa5.38□□□□□ -1.55
CCDC88C-212ENST00000556767 KRTAP9-3Q9BYQ3 159 aa5.37□□□□□ -1.55
CCDC88C-212ENST00000556767 CRCT1Q9UGL9 99 aa5.36□□□□□ -1.55
CCDC88C-212ENST00000556767 FSIP2Q5CZC0 6907 aa5.35□□□□□ -1.55
CCDC88C-212ENST00000556767 NDUFC1O43677 76 aa5.34□□□□□ -1.55
CCDC88C-212ENST00000556767 LCE2BO14633 110 aa5.33□□□□□ -1.56
CCDC88C-212ENST00000556767 SNURFQ9Y675 71 aa5.31□□□□□ -1.56
CCDC88C-212ENST00000556767 SERP2Q8N6R1 65 aa5.3□□□□□ -1.56
CCDC88C-212ENST00000556767 DMAC1Q96GE9 116 aa5.3□□□□□ -1.56
CCDC88C-212ENST00000556767 C20orf197Q8N268 126 aa5.28□□□□□ -1.56
CCDC88C-212ENST00000556767 ACYP2P14621 99 aa5.23□□□□□ -1.57
CCDC88C-212ENST00000556767 USH2AO75445 5202 aa5.2□□□□□ -1.58
CCDC88C-212ENST00000556767 COX7CP15954 63 aa5.19□□□□□ -1.58
CCDC88C-212ENST00000556767 ADM2Q7Z4H4 148 aa5.19□□□□□ -1.58
CCDC88C-212ENST00000556767 H0YAA0 97 aa5.18□□□□□ -1.58
CCDC88C-212ENST00000556767 CHKB-CPT1BH3BT56 60 aa5.18□□□□□ -1.58
CCDC88C-212ENST00000556767 KRTAP19-1Q8IUB9 90 aa5.17□□□□□ -1.58
CCDC88C-212ENST00000556767 SPANXA2-OT1Q8N9U9 137 aa5.17□□□□□ -1.58
CCDC88C-212ENST00000556767 CRIPTQ9P021 101 aa5.16□□□□□ -1.58
CCDC88C-212ENST00000556767 SPTSSBQ8NFR3 76 aa5.15□□□□□ -1.59
CCDC88C-212ENST00000556767 ANAPC13Q9BS18 74 aa5.14□□□□□ -1.59
CCDC88C-212ENST00000556767 SPRR2GQ9BYE4 73 aa5.14□□□□□ -1.59
CCDC88C-212ENST00000556767 SSPOA2VEC9 5147 aa5.14□□□□□ -1.59
CCDC88C-212ENST00000556767 Q5VV11 94 aa5.11□□□□□ -1.59
CCDC88C-212ENST00000556767 P0C880 135 aa5.08□□□□□ -1.6
CCDC88C-212ENST00000556767 KRTAP19-8Q3LI54 63 aa5.08□□□□□ -1.6
CCDC88C-212ENST00000556767 KRTAP19-6Q3LI70 58 aa5.08□□□□□ -1.6
CCDC88C-212ENST00000556767 MT1BP07438 61 aa5.06□□□□□ -1.6
CCDC88C-212ENST00000556767 CYSTM1Q9H1C7 97 aa5.06□□□□□ -1.6
CCDC88C-212ENST00000556767 H7BZZ5 65 aa5.05□□□□□ -1.6
CCDC88C-212ENST00000556767 R4GN34 69 aa5.05□□□□□ -1.6
CCDC88C-212ENST00000556767 COA5Q86WW8 74 aa5.04□□□□□ -1.6
CCDC88C-212ENST00000556767 M0QZ58 72 aa5.03□□□□□ -1.6
CCDC88C-212ENST00000556767 CCDC179H3BU77 68 aa5.02□□□□□ -1.61
CCDC88C-212ENST00000556767 LOC100996750A0A140TA64 210 aa4.99□□□□□ -1.61
CCDC88C-212ENST00000556767 KRTAP4-6Q9BYQ5 205 aa4.99□□□□□ -1.61
CCDC88C-212ENST00000556767 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.98□□□□□ -1.61
CCDC88C-212ENST00000556767 A6NN06 94 aa4.97□□□□□ -1.61
CCDC88C-212ENST00000556767 LINC01554Q52M75 96 aa4.97□□□□□ -1.61
CCDC88C-212ENST00000556767 FCGBPQ9Y6R7 5405 aaPredicted RBP4.97□□□□□ -1.61
CCDC88C-212ENST00000556767 PLAC4Q8WY50 150 aa4.94□□□□□ -1.62
CCDC88C-212ENST00000556767 SEC61GP60059 68 aa4.92□□□□□ -1.62
CCDC88C-212ENST00000556767 KRTAP10-5P60370 271 aa4.9□□□□□ -1.63
CCDC88C-212ENST00000556767 SERP1Q9Y6X1 66 aa4.9□□□□□ -1.63
CCDC88C-212ENST00000556767 ATP5EP56381 51 aaPredicted RBP4.88□□□□□ -1.63
CCDC88C-212ENST00000556767 KRTAP9-7A8MTY7 169 aa4.86□□□□□ -1.63
CCDC88C-212ENST00000556767 MACF1Q9UPN3 7388 aaKnown RBP4.84□□□□□ -1.63
CCDC88C-212ENST00000556767 PRO2289Q9P1D8 64 aa4.84□□□□□ -1.63
CCDC88C-212ENST00000556767 TMEM258P61165 79 aa4.83□□□□□ -1.64
CCDC88C-212ENST00000556767 A0A1B0GU69 56 aa4.81□□□□□ -1.64
CCDC88C-212ENST00000556767 KRTAP13-4Q3LI77 160 aa4.81□□□□□ -1.64
CCDC88C-212ENST00000556767 SYNE2Q8WXH0 6885 aaKnown RBP4.79□□□□□ -1.64
CCDC88C-212ENST00000556767 MT1XP80297 61 aa4.79□□□□□ -1.64
CCDC88C-212ENST00000556767 A0A1B0GU33 70 aa4.78□□□□□ -1.64
CCDC88C-212ENST00000556767 A0A0D9SG42 100 aa4.75□□□□□ -1.65
CCDC88C-212ENST00000556767 SPATA8Q6RVD6 105 aa4.75□□□□□ -1.65
CCDC88C-212ENST00000556767 PRR15LQ9BU68 103 aa4.72□□□□□ -1.65
CCDC88C-212ENST00000556767 KRTAP6-3Q3LI67 103 aa4.71□□□□□ -1.66
CCDC88C-212ENST00000556767 CAMK2N1Q7Z7J9 78 aa4.7□□□□□ -1.66
CCDC88C-212ENST00000556767 LINC01558Q9Y6Z2 57 aa4.68□□□□□ -1.66
CCDC88C-212ENST00000556767 SPINT4Q6UDR6 99 aa4.67□□□□□ -1.66
CCDC88C-212ENST00000556767 SMIM26A0A096LP01 95 aa4.65□□□□□ -1.67
CCDC88C-212ENST00000556767 KRTAP12-2P59991 146 aa4.62□□□□□ -1.67
CCDC88C-212ENST00000556767 A8MU10 97 aa4.61□□□□□ -1.67
CCDC88C-212ENST00000556767 PCP4P48539 62 aa4.61□□□□□ -1.67
CCDC88C-212ENST00000556767 KRTAP12-1P59990 96 aa4.6□□□□□ -1.67
CCDC88C-212ENST00000556767 KRTAP10-7P60409 375 aaPredicted RBP4.59□□□□□ -1.67
CCDC88C-212ENST00000556767 KRTAP8-1Q8IUC2 63 aa4.57□□□□□ -1.68
CCDC88C-212ENST00000556767 KRTAP4-8A0A0G2JLE6 195 aa4.55□□□□□ -1.68
CCDC88C-212ENST00000556767 UQCR11O14957 56 aa4.55□□□□□ -1.68
CCDC88C-212ENST00000556767 KRTAP4-8Q9BYQ9 185 aa4.55□□□□□ -1.68
CCDC88C-212ENST00000556767 V9GYY9 64 aa4.55□□□□□ -1.68
CCDC88C-212ENST00000556767 KRTAP5-9P26371 169 aa4.54□□□□□ -1.68
CCDC88C-212ENST00000556767 KRTAP10-12P60413 245 aa4.54□□□□□ -1.68
CCDC88C-212ENST00000556767 SPRR2FQ96RM1 72 aa4.52□□□□□ -1.69
CCDC88C-212ENST00000556767 PSPHP1O15172 72 aa4.51□□□□□ -1.69
CCDC88C-212ENST00000556767 KMT2DO14686 5537 aa4.5□□□□□ -1.69
CCDC88C-212ENST00000556767 Q1T7F1 81 aa4.49□□□□□ -1.69
CCDC88C-212ENST00000556767 NEBP20929 6669 aa4.48□□□□□ -1.69
CCDC88C-212ENST00000556767 MIR22HGQ0VDD5 57 aa4.48□□□□□ -1.69
CCDC88C-212ENST00000556767 RPS28P62857 69 aaKnown RBP4.43□□□□□ -1.7
CCDC88C-212ENST00000556767 MUC12Q9UKN1 5478 aa4.42□□□□□ -1.7
CCDC88C-212ENST00000556767 SPRR2EP22531 72 aa4.41□□□□□ -1.7
CCDC88C-212ENST00000556767 SPRR2BP35325 72 aa4.41□□□□□ -1.7
CCDC88C-212ENST00000556767 SPRR2AP35326 72 aa4.41□□□□□ -1.7
CCDC88C-212ENST00000556767 C10orf95Q9H7T3 257 aa4.39□□□□□ -1.71
CCDC88C-212ENST00000556767 A6NED7 52 aa4.38□□□□□ -1.71
CCDC88C-212ENST00000556767 K7ERS5 55 aa4.38□□□□□ -1.71
CCDC88C-212ENST00000556767 TNP1P09430 55 aa4.36□□□□□ -1.71
CCDC88C-212ENST00000556767 LCE1AQ5T7P2 110 aa4.34□□□□□ -1.71
CCDC88C-212ENST00000556767 KRTAP20-1Q3LI63 56 aa4.3□□□□□ -1.72
CCDC88C-212ENST00000556767 KRTAP19-7Q3SYF9 63 aa4.27□□□□□ -1.73
CCDC88C-212ENST00000556767 MDN1Q9NU22 5596 aa4.27□□□□□ -1.73
CCDC88C-212ENST00000556767 SPRR2DP22532 72 aa4.26□□□□□ -1.73
CCDC88C-212ENST00000556767 KRTAP19-5Q3LI72 72 aa4.25□□□□□ -1.73
CCDC88C-212ENST00000556767 LCE3AQ5TA76 89 aa4.25□□□□□ -1.73
CCDC88C-212ENST00000556767 MT1EP04732 61 aa4.24□□□□□ -1.73
CCDC88C-212ENST00000556767 KRTAP4-12Q9BQ66 201 aa4.24□□□□□ -1.73
CCDC88C-212ENST00000556767 KRTAP2-3P0C7H8 128 aa4.23□□□□□ -1.73
CCDC88C-212ENST00000556767 KRTAP2-4Q9BYR9 128 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms