RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 UBR4Q5T4S7 5183 aa3.32□□□□□ -1.88
SCFD1-212ENST00000554486 PCOTHQ58A44 107 aa3.31□□□□□ -1.88
SCFD1-212ENST00000554486 IMUPQ9GZP8 106 aa3.31□□□□□ -1.88
SCFD1-212ENST00000554486 NDUFS5O43920 106 aa3.29□□□□□ -1.88
SCFD1-212ENST00000554486 ZCCHC13Q8WW36 166 aaKnown RBP3.29□□□□□ -1.88
SCFD1-212ENST00000554486 KRTAP4-1Q9BYQ7 146 aa3.29□□□□□ -1.88
SCFD1-212ENST00000554486 Q5W150 140 aa3.28□□□□□ -1.88
SCFD1-212ENST00000554486 ATP11AUNQ6ZP68 121 aa3.28□□□□□ -1.88
SCFD1-212ENST00000554486 FAM236AA0A1B0GUQ0 79 aa3.26□□□□□ -1.89
SCFD1-212ENST00000554486 FAM236BA0A1B0GV22 79 aa3.26□□□□□ -1.89
SCFD1-212ENST00000554486 TP53AIP1Q9HCN2 124 aa3.26□□□□□ -1.89
SCFD1-212ENST00000554486 KRTAP12-2P59991 146 aa3.25□□□□□ -1.89
SCFD1-212ENST00000554486 UQCRQO14949 82 aa3.24□□□□□ -1.89
SCFD1-212ENST00000554486 MUC2Q02817 5179 aa3.23□□□□□ -1.89
SCFD1-212ENST00000554486 SCGB1A1P11684 91 aa3.23□□□□□ -1.89
SCFD1-212ENST00000554486 FLGP20930 4061 aaPredicted RBP3.23□□□□□ -1.89
SCFD1-212ENST00000554486 TRAV22A0A0B4J277 110 aa3.22□□□□□ -1.89
SCFD1-212ENST00000554486 SPINK7P58062 85 aa3.22□□□□□ -1.89
SCFD1-212ENST00000554486 TRAV7A0A075B6U4 112 aa3.21□□□□□ -1.9
SCFD1-212ENST00000554486 H0Y9P7 68 aa3.21□□□□□ -1.9
SCFD1-212ENST00000554486 ATOX1O00244 68 aa3.21□□□□□ -1.9
SCFD1-212ENST00000554486 HRES1P13985 223 aa3.2□□□□□ -1.9
SCFD1-212ENST00000554486 C7orf65Q6ZTY9 151 aa3.2□□□□□ -1.9
SCFD1-212ENST00000554486 SMIM20Q8N5G0 67 aa3.2□□□□□ -1.9
SCFD1-212ENST00000554486 C5orf47Q569G3 176 aa3.19□□□□□ -1.9
SCFD1-212ENST00000554486 LOC101927531A0A1B0GV80 90 aa3.18□□□□□ -1.9
SCFD1-212ENST00000554486 KRTAP19-2Q3LHN2 52 aa3.18□□□□□ -1.9
SCFD1-212ENST00000554486 CYP4F30PQ9H0H9 118 aa3.18□□□□□ -1.9
SCFD1-212ENST00000554486 MP68P56378 58 aa3.17□□□□□ -1.9
SCFD1-212ENST00000554486 SERP2Q8N6R1 65 aa3.17□□□□□ -1.9
SCFD1-212ENST00000554486 C1orf64Q8NEQ6 169 aa3.17□□□□□ -1.9
SCFD1-212ENST00000554486 LINC00208Q96KT6 92 aa3.17□□□□□ -1.9
SCFD1-212ENST00000554486 H3BPC8 53 aa3.16□□□□□ -1.9
SCFD1-212ENST00000554486 KRTAP5-2Q701N4 177 aa3.16□□□□□ -1.9
SCFD1-212ENST00000554486 FAT4Q6V0I7 4981 aa3.15□□□□□ -1.9
SCFD1-212ENST00000554486 A0A0U1RQV1 116 aa3.15□□□□□ -1.91
SCFD1-212ENST00000554486 KLKP1Q107X0 134 aa3.15□□□□□ -1.91
SCFD1-212ENST00000554486 COX7CP15954 63 aa3.14□□□□□ -1.91
SCFD1-212ENST00000554486 LCE3AQ5TA76 89 aa3.14□□□□□ -1.91
SCFD1-212ENST00000554486 OBSCNQ5VST9 7968 aa3.13□□□□□ -1.91
SCFD1-212ENST00000554486 C4orf26Q17RF5 130 aa3.13□□□□□ -1.91
SCFD1-212ENST00000554486 ANAPC13Q9BS18 74 aa3.13□□□□□ -1.91
SCFD1-212ENST00000554486 RBM12B-AS1Q9P1G2 102 aa3.13□□□□□ -1.91
SCFD1-212ENST00000554486 C20orf197Q8N268 126 aa3.12□□□□□ -1.91
SCFD1-212ENST00000554486 SNURFQ9Y675 71 aa3.12□□□□□ -1.91
SCFD1-212ENST00000554486 FAM236DA0A1B0GTK5 79 aa3.11□□□□□ -1.91
SCFD1-212ENST00000554486 FAM236CP0DP71 79 aa3.11□□□□□ -1.91
SCFD1-212ENST00000554486 COX6B2Q6YFQ2 88 aa3.11□□□□□ -1.91
SCFD1-212ENST00000554486 CYSTM1Q9H1C7 97 aa3.09□□□□□ -1.91
SCFD1-212ENST00000554486 CCDC179H3BU77 68 aa3.08□□□□□ -1.92
SCFD1-212ENST00000554486 MT1HP80294 61 aa3.08□□□□□ -1.92
SCFD1-212ENST00000554486 H1FX-AS1Q4G0G2 97 aa3.08□□□□□ -1.92
SCFD1-212ENST00000554486 H7BZZ5 65 aa3.05□□□□□ -1.92
SCFD1-212ENST00000554486 DMAC1Q96GE9 116 aa3.05□□□□□ -1.92
SCFD1-212ENST00000554486 A8MUN3 132 aa3.04□□□□□ -1.92
SCFD1-212ENST00000554486 NDUFC1O43677 76 aa3.04□□□□□ -1.92
SCFD1-212ENST00000554486 SPANXA2-OT1Q8N9U9 137 aa3.04□□□□□ -1.92
SCFD1-212ENST00000554486 KRTAP4-3Q9BYR4 195 aa3.03□□□□□ -1.92
SCFD1-212ENST00000554486 S4R3F8 94 aa3.02□□□□□ -1.93
SCFD1-212ENST00000554486 M0R2T5 61 aa3.01□□□□□ -1.93
SCFD1-212ENST00000554486 LCA10Q71F78 164 aa3.01□□□□□ -1.93
SCFD1-212ENST00000554486 ACYP2P14621 99 aa2.99□□□□□ -1.93
SCFD1-212ENST00000554486 CSAG1Q6PB30 78 aa2.96□□□□□ -1.94
SCFD1-212ENST00000554486 ATP5EP56381 51 aaPredicted RBP2.95□□□□□ -1.94
SCFD1-212ENST00000554486 TMEM258P61165 79 aa2.95□□□□□ -1.94
SCFD1-212ENST00000554486 COA5Q86WW8 74 aa2.95□□□□□ -1.94
SCFD1-212ENST00000554486 MT2AP02795 61 aa2.94□□□□□ -1.94
SCFD1-212ENST00000554486 CHKB-CPT1BH3BT56 60 aa2.93□□□□□ -1.94
SCFD1-212ENST00000554486 MT1FP04733 61 aa2.92□□□□□ -1.94
SCFD1-212ENST00000554486 SPTSSBQ8NFR3 76 aa2.9□□□□□ -1.95
SCFD1-212ENST00000554486 H0YAA0 97 aa2.89□□□□□ -1.95
SCFD1-212ENST00000554486 KRTAP10-10P60014 251 aa2.89□□□□□ -1.95
SCFD1-212ENST00000554486 ADM2Q7Z4H4 148 aa2.87□□□□□ -1.95
SCFD1-212ENST00000554486 SERP1Q9Y6X1 66 aa2.87□□□□□ -1.95
SCFD1-212ENST00000554486 P0C880 135 aa2.86□□□□□ -1.95
SCFD1-212ENST00000554486 KRTAP5-5Q701N2 237 aaPredicted RBP2.84□□□□□ -1.95
SCFD1-212ENST00000554486 SEC61GP60059 68 aa2.83□□□□□ -1.96
SCFD1-212ENST00000554486 LCE3DQ9BYE3 92 aa2.82□□□□□ -1.96
SCFD1-212ENST00000554486 USH2AO75445 5202 aa2.81□□□□□ -1.96
SCFD1-212ENST00000554486 RPS28P62857 69 aaKnown RBP2.8□□□□□ -1.96
SCFD1-212ENST00000554486 CAMK2N1Q7Z7J9 78 aa2.8□□□□□ -1.96
SCFD1-212ENST00000554486 SPRR2GQ9BYE4 73 aa2.8□□□□□ -1.96
SCFD1-212ENST00000554486 CRIPTQ9P021 101 aa2.8□□□□□ -1.96
SCFD1-212ENST00000554486 LINC01558Q9Y6Z2 57 aa2.8□□□□□ -1.96
SCFD1-212ENST00000554486 A0A1B0GU69 56 aa2.78□□□□□ -1.96
SCFD1-212ENST00000554486 FSIP2Q5CZC0 6907 aa2.77□□□□□ -1.97
SCFD1-212ENST00000554486 SMIM26A0A096LP01 95 aa2.77□□□□□ -1.97
SCFD1-212ENST00000554486 M0QZ58 72 aa2.76□□□□□ -1.97
SCFD1-212ENST00000554486 KRTAP5-8O75690 187 aa2.76□□□□□ -1.97
SCFD1-212ENST00000554486 KRTAP19-8Q3LI54 63 aa2.76□□□□□ -1.97
SCFD1-212ENST00000554486 KRTAP13-4Q3LI77 160 aa2.76□□□□□ -1.97
SCFD1-212ENST00000554486 R4GN34 69 aa2.76□□□□□ -1.97
SCFD1-212ENST00000554486 Q1T7F1 81 aa2.75□□□□□ -1.97
SCFD1-212ENST00000554486 A0A1B0GU33 70 aa2.74□□□□□ -1.97
SCFD1-212ENST00000554486 MT1BP07438 61 aa2.74□□□□□ -1.97
SCFD1-212ENST00000554486 LCE1CQ5T751 118 aa2.74□□□□□ -1.97
SCFD1-212ENST00000554486 LCE1BQ5T7P3 118 aa2.74□□□□□ -1.97
SCFD1-212ENST00000554486 PRR15LQ9BU68 103 aa2.73□□□□□ -1.97
SCFD1-212ENST00000554486 V9GYY9 64 aa2.73□□□□□ -1.97
SCFD1-212ENST00000554486 SSPOA2VEC9 5147 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms