RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 LCA10Q71F78 164 aa6.76□□□□□ -1.33
CCDC88C-207ENST00000554051 SMIM20Q8N5G0 67 aa6.72□□□□□ -1.33
CCDC88C-207ENST00000554051 FAM236AA0A1B0GUQ0 79 aa6.7□□□□□ -1.34
CCDC88C-207ENST00000554051 FAM236BA0A1B0GV22 79 aa6.7□□□□□ -1.34
CCDC88C-207ENST00000554051 USH2AO75445 5202 aa6.7□□□□□ -1.34
CCDC88C-207ENST00000554051 MT-ATP8P03928 68 aa6.67□□□□□ -1.34
CCDC88C-207ENST00000554051 NDUFC1O43677 76 aa6.66□□□□□ -1.34
CCDC88C-207ENST00000554051 KLKP1Q107X0 134 aa6.66□□□□□ -1.34
CCDC88C-207ENST00000554051 TRAV7A0A075B6U4 112 aa6.62□□□□□ -1.35
CCDC88C-207ENST00000554051 H0YAA0 97 aa6.59□□□□□ -1.35
CCDC88C-207ENST00000554051 DMAC1Q96GE9 116 aa6.59□□□□□ -1.35
CCDC88C-207ENST00000554051 SSPOA2VEC9 5147 aa6.58□□□□□ -1.36
CCDC88C-207ENST00000554051 CRIPTQ9P021 101 aa6.58□□□□□ -1.36
CCDC88C-207ENST00000554051 KRTAP19-1Q8IUB9 90 aa6.54□□□□□ -1.36
CCDC88C-207ENST00000554051 KRTAP19-6Q3LI70 58 aa6.52□□□□□ -1.37
CCDC88C-207ENST00000554051 SPRR2GQ9BYE4 73 aa6.52□□□□□ -1.37
CCDC88C-207ENST00000554051 Q5VV11 94 aa6.47□□□□□ -1.37
CCDC88C-207ENST00000554051 ACYP2P14621 99 aa6.46□□□□□ -1.38
CCDC88C-207ENST00000554051 C20orf197Q8N268 126 aa6.46□□□□□ -1.38
CCDC88C-207ENST00000554051 SERP2Q8N6R1 65 aa6.46□□□□□ -1.38
CCDC88C-207ENST00000554051 FCGBPQ9Y6R7 5405 aaPredicted RBP6.44□□□□□ -1.38
CCDC88C-207ENST00000554051 KRTAP19-8Q3LI54 63 aa6.44□□□□□ -1.38
CCDC88C-207ENST00000554051 ADM2Q7Z4H4 148 aa6.43□□□□□ -1.38
CCDC88C-207ENST00000554051 SPTSSBQ8NFR3 76 aa6.43□□□□□ -1.38
CCDC88C-207ENST00000554051 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.42□□□□□ -1.38
CCDC88C-207ENST00000554051 SPANXA2-OT1Q8N9U9 137 aa6.41□□□□□ -1.38
CCDC88C-207ENST00000554051 SNURFQ9Y675 71 aa6.39□□□□□ -1.39
CCDC88C-207ENST00000554051 MACF1Q9UPN3 7388 aaKnown RBP6.38□□□□□ -1.39
CCDC88C-207ENST00000554051 CHKB-CPT1BH3BT56 60 aa6.37□□□□□ -1.39
CCDC88C-207ENST00000554051 MT1BP07438 61 aa6.37□□□□□ -1.39
CCDC88C-207ENST00000554051 R4GN34 69 aa6.32□□□□□ -1.4
CCDC88C-207ENST00000554051 A6NN06 94 aa6.31□□□□□ -1.4
CCDC88C-207ENST00000554051 SYNE2Q8WXH0 6885 aaKnown RBP6.3□□□□□ -1.4
CCDC88C-207ENST00000554051 KRTAP9-7A8MTY7 169 aa6.3□□□□□ -1.4
CCDC88C-207ENST00000554051 COX7CP15954 63 aa6.3□□□□□ -1.4
CCDC88C-207ENST00000554051 KRTAP4-8Q9BYQ9 185 aa6.29□□□□□ -1.4
CCDC88C-207ENST00000554051 P0C880 135 aa6.25□□□□□ -1.41
CCDC88C-207ENST00000554051 M0QZ58 72 aa6.24□□□□□ -1.41
CCDC88C-207ENST00000554051 KRTAP10-5P60370 271 aa6.24□□□□□ -1.41
CCDC88C-207ENST00000554051 PLAC4Q8WY50 150 aa6.2□□□□□ -1.42
CCDC88C-207ENST00000554051 PRO2289Q9P1D8 64 aa6.19□□□□□ -1.42
CCDC88C-207ENST00000554051 COA5Q86WW8 74 aa6.16□□□□□ -1.42
CCDC88C-207ENST00000554051 ANAPC13Q9BS18 74 aa6.16□□□□□ -1.42
CCDC88C-207ENST00000554051 H7BZZ5 65 aa6.14□□□□□ -1.43
CCDC88C-207ENST00000554051 KRTAP6-3Q3LI67 103 aa6.1□□□□□ -1.43
CCDC88C-207ENST00000554051 LINC01554Q52M75 96 aa6.1□□□□□ -1.43
CCDC88C-207ENST00000554051 KRTAP4-12Q9BQ66 201 aa6.1□□□□□ -1.43
CCDC88C-207ENST00000554051 SEC61GP60059 68 aa6.08□□□□□ -1.44
CCDC88C-207ENST00000554051 CYSTM1Q9H1C7 97 aa6.05□□□□□ -1.44
CCDC88C-207ENST00000554051 ATP5EP56381 51 aaPredicted RBP6.03□□□□□ -1.44
CCDC88C-207ENST00000554051 SERP1Q9Y6X1 66 aa6.03□□□□□ -1.44
CCDC88C-207ENST00000554051 MT1XP80297 61 aa6.02□□□□□ -1.45
CCDC88C-207ENST00000554051 LCE3BQ5TA77 95 aa5.96□□□□□ -1.46
CCDC88C-207ENST00000554051 NEBP20929 6669 aa5.96□□□□□ -1.46
CCDC88C-207ENST00000554051 CCDC179H3BU77 68 aa5.95□□□□□ -1.46
CCDC88C-207ENST00000554051 H3BS24 57 aa5.94□□□□□ -1.46
CCDC88C-207ENST00000554051 KRTAP12-2P59991 146 aa5.93□□□□□ -1.46
CCDC88C-207ENST00000554051 KRTAP9-9Q9BYP9 154 aa5.9□□□□□ -1.46
CCDC88C-207ENST00000554051 KRTAP9-4Q9BYQ2 154 aa5.9□□□□□ -1.46
CCDC88C-207ENST00000554051 KRTAP5-9P26371 169 aa5.89□□□□□ -1.47
CCDC88C-207ENST00000554051 KRTAP13-4Q3LI77 160 aa5.89□□□□□ -1.47
CCDC88C-207ENST00000554051 A0A1B0GU33 70 aa5.88□□□□□ -1.47
CCDC88C-207ENST00000554051 A0A1B0GU69 56 aa5.88□□□□□ -1.47
CCDC88C-207ENST00000554051 TMEM258P61165 79 aa5.88□□□□□ -1.47
CCDC88C-207ENST00000554051 CAMK2N1Q7Z7J9 78 aa5.84□□□□□ -1.47
CCDC88C-207ENST00000554051 PRR15LQ9BU68 103 aa5.82□□□□□ -1.48
CCDC88C-207ENST00000554051 KRTAP8-1Q8IUC2 63 aa5.79□□□□□ -1.48
CCDC88C-207ENST00000554051 SMIM26A0A096LP01 95 aa5.77□□□□□ -1.49
CCDC88C-207ENST00000554051 A0A0D9SG42 100 aa5.77□□□□□ -1.49
CCDC88C-207ENST00000554051 SPATA8Q6RVD6 105 aa5.77□□□□□ -1.49
CCDC88C-207ENST00000554051 KRTAP10-12P60413 245 aa5.75□□□□□ -1.49
CCDC88C-207ENST00000554051 MUC12Q9UKN1 5478 aa5.75□□□□□ -1.49
CCDC88C-207ENST00000554051 KRTAP4-8A0A0G2JLE6 195 aa5.74□□□□□ -1.49
CCDC88C-207ENST00000554051 SPRR2FQ96RM1 72 aa5.73□□□□□ -1.49
CCDC88C-207ENST00000554051 KRTAP10-7P60409 375 aaPredicted RBP5.72□□□□□ -1.49
CCDC88C-207ENST00000554051 KMT2DO14686 5537 aa5.72□□□□□ -1.49
CCDC88C-207ENST00000554051 SPINT4Q6UDR6 99 aa5.71□□□□□ -1.5
CCDC88C-207ENST00000554051 LINC01558Q9Y6Z2 57 aa5.71□□□□□ -1.5
CCDC88C-207ENST00000554051 KRTAP12-1P59990 96 aa5.66□□□□□ -1.5
CCDC88C-207ENST00000554051 LCE4AQ5TA78 99 aa5.66□□□□□ -1.5
CCDC88C-207ENST00000554051 MDN1Q9NU22 5596 aa5.63□□□□□ -1.51
CCDC88C-207ENST00000554051 SPRR2EP22531 72 aa5.61□□□□□ -1.51
CCDC88C-207ENST00000554051 SPRR2BP35325 72 aa5.61□□□□□ -1.51
CCDC88C-207ENST00000554051 SPRR2AP35326 72 aa5.61□□□□□ -1.51
CCDC88C-207ENST00000554051 LCE1DQ5T752 114 aa5.6□□□□□ -1.51
CCDC88C-207ENST00000554051 A8MU10 97 aa5.58□□□□□ -1.52
CCDC88C-207ENST00000554051 UQCR11O14957 56 aa5.58□□□□□ -1.52
CCDC88C-207ENST00000554051 V9GYY9 64 aa5.58□□□□□ -1.52
CCDC88C-207ENST00000554051 KRTAP20-1Q3LI63 56 aa5.57□□□□□ -1.52
CCDC88C-207ENST00000554051 KRTAP19-4Q3LI73 84 aa5.57□□□□□ -1.52
CCDC88C-207ENST00000554051 LCE1AQ5T7P2 110 aa5.53□□□□□ -1.52
CCDC88C-207ENST00000554051 KRTAP4-7Q9BYR0 210 aa5.52□□□□□ -1.53
CCDC88C-207ENST00000554051 KRTAP2-3P0C7H8 128 aa5.46□□□□□ -1.54
CCDC88C-207ENST00000554051 Q1T7F1 81 aa5.46□□□□□ -1.54
CCDC88C-207ENST00000554051 KRTAP2-4Q9BYR9 128 aa5.46□□□□□ -1.54
CCDC88C-207ENST00000554051 TNP1P09430 55 aa5.44□□□□□ -1.54
CCDC88C-207ENST00000554051 MIR22HGQ0VDD5 57 aa5.44□□□□□ -1.54
CCDC88C-207ENST00000554051 KRTAP4-9Q9BYQ8 210 aa5.44□□□□□ -1.54
CCDC88C-207ENST00000554051 SPRR2DP22532 72 aa5.43□□□□□ -1.54
CCDC88C-207ENST00000554051 K7ERS5 55 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms