RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 J3QL48 77 aa6.94□□□□□ -1.3
SHMT2-205ENST00000553474 PCLOQ9Y6V0 5065 aa6.94□□□□□ -1.3
SHMT2-205ENST00000553474 FAT3Q8TDW7 4589 aa6.93□□□□□ -1.3
SHMT2-205ENST00000553474 DMBT1Q9UGM3 2413 aaPredicted RBP6.92□□□□□ -1.3
SHMT2-205ENST00000553474 KRTAP10-8P60410 259 aa6.91□□□□□ -1.3
SHMT2-205ENST00000553474 MIR22HGQ0VDD5 57 aa6.91□□□□□ -1.3
SHMT2-205ENST00000553474 MT1HL1P0DM35 61 aa6.9□□□□□ -1.3
SHMT2-205ENST00000553474 PRAC1Q96KF2 57 aa6.9□□□□□ -1.31
SHMT2-205ENST00000553474 TNXBP22105 4242 aa6.87□□□□□ -1.31
SHMT2-205ENST00000553474 COX6B2Q6YFQ2 88 aa6.85□□□□□ -1.31
SHMT2-205ENST00000553474 KRTAP3-1Q9BYR8 98 aa6.85□□□□□ -1.31
SHMT2-205ENST00000553474 RPL37P61927 97 aaKnown RBP6.8□□□□□ -1.32
SHMT2-205ENST00000553474 ADM2Q7Z4H4 148 aa6.74□□□□□ -1.33
SHMT2-205ENST00000553474 XP32Q5T750 250 aa6.72□□□□□ -1.33
SHMT2-205ENST00000553474 A0A1B0GU33 70 aa6.72□□□□□ -1.33
SHMT2-205ENST00000553474 H1FX-AS1Q4G0G2 97 aa6.69□□□□□ -1.34
SHMT2-205ENST00000553474 HERC1Q15751 4861 aa6.68□□□□□ -1.34
SHMT2-205ENST00000553474 ROMO1P60602 79 aa6.68□□□□□ -1.34
SHMT2-205ENST00000553474 H0YAA0 97 aa6.67□□□□□ -1.34
SHMT2-205ENST00000553474 CSAG1Q6PB30 78 aa6.65□□□□□ -1.34
SHMT2-205ENST00000553474 TPRXLQ17RH7 258 aa6.6□□□□□ -1.35
SHMT2-205ENST00000553474 KRTAP3-3Q9BYR6 98 aa6.59□□□□□ -1.35
SHMT2-205ENST00000553474 S4R3F8 94 aa6.59□□□□□ -1.35
SHMT2-205ENST00000553474 K7ERS5 55 aa6.57□□□□□ -1.36
SHMT2-205ENST00000553474 HMCN2Q8NDA2 5059 aa6.52□□□□□ -1.37
SHMT2-205ENST00000553474 KRTAP10-6P60371 365 aaPredicted RBP6.52□□□□□ -1.37
SHMT2-205ENST00000553474 LPAP08519 4548 aa6.5□□□□□ -1.37
SHMT2-205ENST00000553474 SEC61BP60468 96 aaKnown RBP6.49□□□□□ -1.37
SHMT2-205ENST00000553474 KRTAP3-2Q9BYR7 98 aa6.46□□□□□ -1.37
SHMT2-205ENST00000553474 KRTAP25-1Q3LHN0 102 aa6.45□□□□□ -1.38
SHMT2-205ENST00000553474 LRP2P98164 4655 aa6.45□□□□□ -1.38
SHMT2-205ENST00000553474 P0C880 135 aa6.44□□□□□ -1.38
SHMT2-205ENST00000553474 KRTAP13-4Q3LI77 160 aa6.36□□□□□ -1.39
SHMT2-205ENST00000553474 M0QZ58 72 aa6.33□□□□□ -1.4
SHMT2-205ENST00000553474 UBR4Q5T4S7 5183 aa6.31□□□□□ -1.4
SHMT2-205ENST00000553474 A0A0D9SG42 100 aa6.29□□□□□ -1.4
SHMT2-205ENST00000553474 LUZP6Q538Z0 58 aa6.27□□□□□ -1.41
SHMT2-205ENST00000553474 MUC17Q685J3 4493 aa6.22□□□□□ -1.41
SHMT2-205ENST00000553474 NDUFAF8A1L188 74 aa6.21□□□□□ -1.41
SHMT2-205ENST00000553474 KRTAP4-1Q9BYQ7 146 aa6.19□□□□□ -1.42
SHMT2-205ENST00000553474 KRTAP12-1P59990 96 aa6.18□□□□□ -1.42
SHMT2-205ENST00000553474 KRTAP12-2P59991 146 aa6.18□□□□□ -1.42
SHMT2-205ENST00000553474 RNF213Q63HN8 5207 aa6.16□□□□□ -1.42
SHMT2-205ENST00000553474 MUC2Q02817 5179 aa6.13□□□□□ -1.43
SHMT2-205ENST00000553474 SPINT4Q6UDR6 99 aa6.13□□□□□ -1.43
SHMT2-205ENST00000553474 R4GN34 69 aa6.11□□□□□ -1.43
SHMT2-205ENST00000553474 KRTAP15-1Q3LI76 137 aa6.1□□□□□ -1.43
SHMT2-205ENST00000553474 CRIPTQ9P021 101 aa6.08□□□□□ -1.44
SHMT2-205ENST00000553474 KRTAP19-2Q3LHN2 52 aa6.05□□□□□ -1.44
SHMT2-205ENST00000553474 FLGP20930 4061 aaPredicted RBP5.94□□□□□ -1.46
SHMT2-205ENST00000553474 FAT4Q6V0I7 4981 aa5.94□□□□□ -1.46
SHMT2-205ENST00000553474 C10orf95Q9H7T3 257 aa5.93□□□□□ -1.46
SHMT2-205ENST00000553474 LCE2CQ5TA81 110 aa5.92□□□□□ -1.46
SHMT2-205ENST00000553474 LORP23490 312 aaPredicted RBP5.91□□□□□ -1.46
SHMT2-205ENST00000553474 CAMK2N1Q7Z7J9 78 aa5.88□□□□□ -1.47
SHMT2-205ENST00000553474 MT1HP80294 61 aa5.85□□□□□ -1.47
SHMT2-205ENST00000553474 M0R2T5 61 aa5.83□□□□□ -1.48
SHMT2-205ENST00000553474 LCE2AQ5TA79 106 aaPredicted RBP5.8□□□□□ -1.48
SHMT2-205ENST00000553474 PP632Q6XCG6 107 aa5.76□□□□□ -1.49
SHMT2-205ENST00000553474 KRTAP23-1A1A580 65 aa5.65□□□□□ -1.51
SHMT2-205ENST00000553474 SPRR2GQ9BYE4 73 aa5.64□□□□□ -1.51
SHMT2-205ENST00000553474 TNP1P09430 55 aa5.6□□□□□ -1.51
SHMT2-205ENST00000553474 PLAC4Q8WY50 150 aa5.57□□□□□ -1.52
SHMT2-205ENST00000553474 KRTAP9-8Q9BYQ0 159 aa5.56□□□□□ -1.52
SHMT2-205ENST00000553474 MT2AP02795 61 aa5.55□□□□□ -1.52
SHMT2-205ENST00000553474 KRTAP19-1Q8IUB9 90 aa5.53□□□□□ -1.52
SHMT2-205ENST00000553474 KRTAP10-10P60014 251 aa5.52□□□□□ -1.53
SHMT2-205ENST00000553474 MT1FP04733 61 aa5.52□□□□□ -1.53
SHMT2-205ENST00000553474 PRO2289Q9P1D8 64 aa5.47□□□□□ -1.53
SHMT2-205ENST00000553474 KRTAP19-8Q3LI54 63 aa5.4□□□□□ -1.54
SHMT2-205ENST00000553474 KRTAP9-3Q9BYQ3 159 aa5.37□□□□□ -1.55
SHMT2-205ENST00000553474 KRTAP9-2Q9BYQ4 174 aa5.37□□□□□ -1.55
SHMT2-205ENST00000553474 LCE2DQ5TA82 110 aaPredicted RBP5.36□□□□□ -1.55
SHMT2-205ENST00000553474 LCE2BO14633 110 aa5.29□□□□□ -1.56
SHMT2-205ENST00000553474 KRTAP9-6A0A140TA67 174 aa5.27□□□□□ -1.57
SHMT2-205ENST00000553474 FSIP2Q5CZC0 6907 aa5.27□□□□□ -1.57
SHMT2-205ENST00000553474 SPRR5A0A1B0GTR4 108 aa5.26□□□□□ -1.57
SHMT2-205ENST00000553474 MT1BP07438 61 aa5.25□□□□□ -1.57
SHMT2-205ENST00000553474 LCE3AQ5TA76 89 aa5.21□□□□□ -1.57
SHMT2-205ENST00000553474 KRTAP10-5P60370 271 aa5.2□□□□□ -1.58
SHMT2-205ENST00000553474 MT1XP80297 61 aa5.2□□□□□ -1.58
SHMT2-205ENST00000553474 INE1O15225 51 aa5.19□□□□□ -1.58
SHMT2-205ENST00000553474 KRTAP8-1Q8IUC2 63 aa5.19□□□□□ -1.58
SHMT2-205ENST00000553474 USH2AO75445 5202 aa5.19□□□□□ -1.58
SHMT2-205ENST00000553474 CRCT1Q9UGL9 99 aa5.12□□□□□ -1.59
SHMT2-205ENST00000553474 KRTAP10-12P60413 245 aa5.11□□□□□ -1.59
SHMT2-205ENST00000553474 SSPOA2VEC9 5147 aa5.09□□□□□ -1.59
SHMT2-205ENST00000553474 KRTAP12-3P60328 96 aa5.02□□□□□ -1.61
SHMT2-205ENST00000553474 KRTAP19-6Q3LI70 58 aa5.01□□□□□ -1.61
SHMT2-205ENST00000553474 KRTAP10-7P60409 375 aaPredicted RBP4.99□□□□□ -1.61
SHMT2-205ENST00000553474 FCGBPQ9Y6R7 5405 aaPredicted RBP4.91□□□□□ -1.62
SHMT2-205ENST00000553474 KRTAP19-5Q3LI72 72 aa4.79□□□□□ -1.64
SHMT2-205ENST00000553474 KRTAP19-4Q3LI73 84 aa4.78□□□□□ -1.64
SHMT2-205ENST00000553474 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.76□□□□□ -1.65
SHMT2-205ENST00000553474 MACF1Q9UPN3 7388 aaKnown RBP4.74□□□□□ -1.65
SHMT2-205ENST00000553474 LCE3CQ5T5A8 94 aa4.73□□□□□ -1.65
SHMT2-205ENST00000553474 KRTAP9-7A8MTY7 169 aa4.71□□□□□ -1.66
SHMT2-205ENST00000553474 SYNE2Q8WXH0 6885 aaKnown RBP4.66□□□□□ -1.66
SHMT2-205ENST00000553474 KRTAP4-8A0A0G2JLE6 195 aa4.65□□□□□ -1.67
SHMT2-205ENST00000553474 KRTAP4-8Q9BYQ9 185 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 249.4 ms