RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 H7BZZ5 65 aa5.15□□□□□ -1.59
CCDC88C-206ENST00000553437 ATP5EP56381 51 aaPredicted RBP5.15□□□□□ -1.59
CCDC88C-206ENST00000553437 PRR15Q8IV56 129 aa5.14□□□□□ -1.59
CCDC88C-206ENST00000553437 TMEM254Q8TBM7 123 aa5.14□□□□□ -1.59
CCDC88C-206ENST00000553437 HCG22E2RYF7 251 aa5.12□□□□□ -1.59
CCDC88C-206ENST00000553437 K7EQZ3 153 aa5.12□□□□□ -1.59
CCDC88C-206ENST00000553437 RBM12B-AS1Q9P1G2 102 aa5.12□□□□□ -1.59
CCDC88C-206ENST00000553437 SNURFQ9Y675 71 aa5.12□□□□□ -1.59
CCDC88C-206ENST00000553437 SSPOA2VEC9 5147 aa5.11□□□□□ -1.59
CCDC88C-206ENST00000553437 SPINK7P58062 85 aa5.11□□□□□ -1.59
CCDC88C-206ENST00000553437 MMP24-AS1A0A0U1RRL7 71 aa5.1□□□□□ -1.59
CCDC88C-206ENST00000553437 SERP1Q9Y6X1 66 aa5.1□□□□□ -1.59
CCDC88C-206ENST00000553437 FCGBPQ9Y6R7 5405 aaPredicted RBP5.08□□□□□ -1.6
CCDC88C-206ENST00000553437 MRPL34Q9BQ48 92 aaKnown RBP5.08□□□□□ -1.6
CCDC88C-206ENST00000553437 C5orf47Q569G3 176 aa5.07□□□□□ -1.6
CCDC88C-206ENST00000553437 USH2AO75445 5202 aa5.06□□□□□ -1.6
CCDC88C-206ENST00000553437 hDV103S1A0JD37 113 aa5.05□□□□□ -1.6
CCDC88C-206ENST00000553437 MT2AP02795 61 aa5.05□□□□□ -1.6
CCDC88C-206ENST00000553437 CASC2Q6XLA1 102 aa5.04□□□□□ -1.6
CCDC88C-206ENST00000553437 WFDC13Q8IUB5 93 aa5.04□□□□□ -1.6
CCDC88C-206ENST00000553437 H3BPC8 53 aa5.03□□□□□ -1.6
CCDC88C-206ENST00000553437 SYNE2Q8WXH0 6885 aaKnown RBP5.02□□□□□ -1.61
CCDC88C-206ENST00000553437 MP68P56378 58 aa5.02□□□□□ -1.61
CCDC88C-206ENST00000553437 MACF1Q9UPN3 7388 aaKnown RBP5.02□□□□□ -1.61
CCDC88C-206ENST00000553437 MT1FP04733 61 aa5.01□□□□□ -1.61
CCDC88C-206ENST00000553437 SMIM26A0A096LP01 95 aa5□□□□□ -1.61
CCDC88C-206ENST00000553437 Q5W150 140 aa5□□□□□ -1.61
CCDC88C-206ENST00000553437 NDUFS5O43920 106 aa4.99□□□□□ -1.61
CCDC88C-206ENST00000553437 H0Y9P7 68 aa4.98□□□□□ -1.61
CCDC88C-206ENST00000553437 TRAV22A0A0B4J277 110 aa4.96□□□□□ -1.62
CCDC88C-206ENST00000553437 KRTAP10-10P60014 251 aa4.96□□□□□ -1.62
CCDC88C-206ENST00000553437 CYP4F30PQ9H0H9 118 aa4.96□□□□□ -1.62
CCDC88C-206ENST00000553437 TP53AIP1Q9HCN2 124 aa4.96□□□□□ -1.62
CCDC88C-206ENST00000553437 LINC00208Q96KT6 92 aa4.95□□□□□ -1.62
CCDC88C-206ENST00000553437 IGKV2D-30A0A075B6S6 120 aa4.94□□□□□ -1.62
CCDC88C-206ENST00000553437 H3BS24 57 aa4.94□□□□□ -1.62
CCDC88C-206ENST00000553437 IGKV2-30P06310 120 aa4.94□□□□□ -1.62
CCDC88C-206ENST00000553437 H1FX-AS1Q4G0G2 97 aa4.93□□□□□ -1.62
CCDC88C-206ENST00000553437 C7orf65Q6ZTY9 151 aa4.93□□□□□ -1.62
CCDC88C-206ENST00000553437 SPANXA2-OT1Q8N9U9 137 aa4.93□□□□□ -1.62
CCDC88C-206ENST00000553437 C4orf26Q17RF5 130 aa4.92□□□□□ -1.62
CCDC88C-206ENST00000553437 C1orf64Q8NEQ6 169 aa4.92□□□□□ -1.62
CCDC88C-206ENST00000553437 Q1T7F1 81 aa4.84□□□□□ -1.63
CCDC88C-206ENST00000553437 KRTAP3-1Q9BYR8 98 aa4.84□□□□□ -1.63
CCDC88C-206ENST00000553437 LOC101927531A0A1B0GV80 90 aa4.83□□□□□ -1.64
CCDC88C-206ENST00000553437 V9GYY9 64 aa4.83□□□□□ -1.64
CCDC88C-206ENST00000553437 NEBP20929 6669 aa4.79□□□□□ -1.64
CCDC88C-206ENST00000553437 COA5Q86WW8 74 aa4.78□□□□□ -1.64
CCDC88C-206ENST00000553437 PRO0628Q9UI54 55 aa4.77□□□□□ -1.65
CCDC88C-206ENST00000553437 KRTAP6-3Q3LI67 103 aa4.76□□□□□ -1.65
CCDC88C-206ENST00000553437 KRTAP19-6Q3LI70 58 aa4.76□□□□□ -1.65
CCDC88C-206ENST00000553437 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.75□□□□□ -1.65
CCDC88C-206ENST00000553437 LCA10Q71F78 164 aa4.74□□□□□ -1.65
CCDC88C-206ENST00000553437 S4R3F8 94 aa4.74□□□□□ -1.65
CCDC88C-206ENST00000553437 BRK1Q8WUW1 75 aa4.72□□□□□ -1.65
CCDC88C-206ENST00000553437 CSAG1Q6PB30 78 aa4.71□□□□□ -1.66
CCDC88C-206ENST00000553437 PSPHP1O15172 72 aa4.7□□□□□ -1.66
CCDC88C-206ENST00000553437 A8MUN3 132 aa4.69□□□□□ -1.66
CCDC88C-206ENST00000553437 ACYP2P14621 99 aa4.69□□□□□ -1.66
CCDC88C-206ENST00000553437 KRTAP20-1Q3LI63 56 aa4.69□□□□□ -1.66
CCDC88C-206ENST00000553437 MUC12Q9UKN1 5478 aa4.68□□□□□ -1.66
CCDC88C-206ENST00000553437 Q5VV11 94 aa4.68□□□□□ -1.66
CCDC88C-206ENST00000553437 DMAC1Q96GE9 116 aa4.68□□□□□ -1.66
CCDC88C-206ENST00000553437 PRR15LQ9BU68 103 aa4.68□□□□□ -1.66
CCDC88C-206ENST00000553437 LINC01558Q9Y6Z2 57 aa4.68□□□□□ -1.66
CCDC88C-206ENST00000553437 SEC61GP60059 68 aa4.65□□□□□ -1.67
CCDC88C-206ENST00000553437 CHKB-CPT1BH3BT56 60 aa4.64□□□□□ -1.67
CCDC88C-206ENST00000553437 SPRR2GQ9BYE4 73 aa4.64□□□□□ -1.67
CCDC88C-206ENST00000553437 A0A0A0MQY5 61 aa4.62□□□□□ -1.67
CCDC88C-206ENST00000553437 MT1BP07438 61 aa4.62□□□□□ -1.67
CCDC88C-206ENST00000553437 KRTAP19-8Q3LI54 63 aa4.62□□□□□ -1.67
CCDC88C-206ENST00000553437 A6NED7 52 aa4.58□□□□□ -1.68
CCDC88C-206ENST00000553437 CDC42SE1Q9NRR8 79 aa4.55□□□□□ -1.68
CCDC88C-206ENST00000553437 H0YAA0 97 aa4.54□□□□□ -1.68
CCDC88C-206ENST00000553437 CRIPTQ9P021 101 aa4.54□□□□□ -1.68
CCDC88C-206ENST00000553437 MDN1Q9NU22 5596 aa4.52□□□□□ -1.69
CCDC88C-206ENST00000553437 A0A1B0GU69 56 aa4.52□□□□□ -1.69
CCDC88C-206ENST00000553437 A6NN06 94 aa4.51□□□□□ -1.69
CCDC88C-206ENST00000553437 SPTSSBQ8NFR3 76 aa4.51□□□□□ -1.69
CCDC88C-206ENST00000553437 KRTAP10-5P60370 271 aa4.49□□□□□ -1.69
CCDC88C-206ENST00000553437 A8MU10 97 aa4.48□□□□□ -1.69
CCDC88C-206ENST00000553437 PMAIP1Q13794 54 aa4.47□□□□□ -1.69
CCDC88C-206ENST00000553437 ADM2Q7Z4H4 148 aa4.47□□□□□ -1.69
CCDC88C-206ENST00000553437 KMT2DO14686 5537 aa4.44□□□□□ -1.7
CCDC88C-206ENST00000553437 UQCR11O14957 56 aa4.43□□□□□ -1.7
CCDC88C-206ENST00000553437 SPATA8Q6RVD6 105 aa4.42□□□□□ -1.7
CCDC88C-206ENST00000553437 P0C880 135 aa4.4□□□□□ -1.71
CCDC88C-206ENST00000553437 MIR22HGQ0VDD5 57 aa4.4□□□□□ -1.71
CCDC88C-206ENST00000553437 KRTAP5-11Q6L8G4 156 aa4.39□□□□□ -1.71
CCDC88C-206ENST00000553437 KTN1-AS1Q86SY8 53 aa4.39□□□□□ -1.71
CCDC88C-206ENST00000553437 KRTAP2-3P0C7H8 128 aa4.38□□□□□ -1.71
CCDC88C-206ENST00000553437 KRTAP2-4Q9BYR9 128 aa4.38□□□□□ -1.71
CCDC88C-206ENST00000553437 GPR98Q8WXG9 6306 aa4.38□□□□□ -1.71
CCDC88C-206ENST00000553437 MT1XP80297 61 aa4.33□□□□□ -1.72
CCDC88C-206ENST00000553437 R4GN34 69 aa4.33□□□□□ -1.72
CCDC88C-206ENST00000553437 M0QZ58 72 aa4.32□□□□□ -1.72
CCDC88C-206ENST00000553437 KRTAP5-9P26371 169 aa4.32□□□□□ -1.72
CCDC88C-206ENST00000553437 PLAC4Q8WY50 150 aa4.3□□□□□ -1.72
CCDC88C-206ENST00000553437 A0A1B0GU33 70 aa4.29□□□□□ -1.72
CCDC88C-206ENST00000553437 PRO2289Q9P1D8 64 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms