RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 C5orf47Q569G3 176 aa7.37□□□□□ -1.23
CHMP1A-206ENST00000549139 IMUPQ9GZP8 106 aa7.37□□□□□ -1.23
CHMP1A-206ENST00000549139 MP68P56378 58 aa7.36□□□□□ -1.23
CHMP1A-206ENST00000549139 LINC00208Q96KT6 92 aa7.36□□□□□ -1.23
CHMP1A-206ENST00000549139 LCA10Q71F78 164 aa7.35□□□□□ -1.23
CHMP1A-206ENST00000549139 SCGB1A1P11684 91 aa7.34□□□□□ -1.23
CHMP1A-206ENST00000549139 CSAG1Q6PB30 78 aa7.34□□□□□ -1.23
CHMP1A-206ENST00000549139 H3BPC8 53 aa7.31□□□□□ -1.24
CHMP1A-206ENST00000549139 MT-ATP8P03928 68 aa7.3□□□□□ -1.24
CHMP1A-206ENST00000549139 KRTAP20-1Q3LI63 56 aa7.3□□□□□ -1.24
CHMP1A-206ENST00000549139 KLKP1Q107X0 134 aa7.29□□□□□ -1.24
CHMP1A-206ENST00000549139 KRTAP3-3Q9BYR6 98 aa7.28□□□□□ -1.24
CHMP1A-206ENST00000549139 A8MUN3 132 aa7.26□□□□□ -1.25
CHMP1A-206ENST00000549139 SMIM20Q8N5G0 67 aa7.21□□□□□ -1.26
CHMP1A-206ENST00000549139 FAM236AA0A1B0GUQ0 79 aa7.2□□□□□ -1.26
CHMP1A-206ENST00000549139 FAM236BA0A1B0GV22 79 aa7.2□□□□□ -1.26
CHMP1A-206ENST00000549139 NDUFC1O43677 76 aa7.18□□□□□ -1.26
CHMP1A-206ENST00000549139 TRAV7A0A075B6U4 112 aa7.17□□□□□ -1.26
CHMP1A-206ENST00000549139 KMT2DO14686 5537 aa7.14□□□□□ -1.27
CHMP1A-206ENST00000549139 MDN1Q9NU22 5596 aa7.11□□□□□ -1.27
CHMP1A-206ENST00000549139 DMAC1Q96GE9 116 aa7.1□□□□□ -1.27
CHMP1A-206ENST00000549139 H0YAA0 97 aa7.09□□□□□ -1.27
CHMP1A-206ENST00000549139 KRTAP5-9P26371 169 aa7.09□□□□□ -1.27
CHMP1A-206ENST00000549139 A6NN06 94 aa7.08□□□□□ -1.28
CHMP1A-206ENST00000549139 SPRR2GQ9BYE4 73 aa7.07□□□□□ -1.28
CHMP1A-206ENST00000549139 CRIPTQ9P021 101 aa7.04□□□□□ -1.28
CHMP1A-206ENST00000549139 MT1BP07438 61 aa7.01□□□□□ -1.29
CHMP1A-206ENST00000549139 KRTAP19-8Q3LI54 63 aa7□□□□□ -1.29
CHMP1A-206ENST00000549139 SERP2Q8N6R1 65 aa7□□□□□ -1.29
CHMP1A-206ENST00000549139 ACYP2P14621 99 aa6.99□□□□□ -1.29
CHMP1A-206ENST00000549139 KRTAP2-3P0C7H8 128 aa6.98□□□□□ -1.29
CHMP1A-206ENST00000549139 ADM2Q7Z4H4 148 aa6.98□□□□□ -1.29
CHMP1A-206ENST00000549139 KRTAP2-4Q9BYR9 128 aa6.98□□□□□ -1.29
CHMP1A-206ENST00000549139 SNURFQ9Y675 71 aa6.98□□□□□ -1.29
CHMP1A-206ENST00000549139 Q5VV11 94 aa6.96□□□□□ -1.3
CHMP1A-206ENST00000549139 KRTAP10-5P60370 271 aa6.94□□□□□ -1.3
CHMP1A-206ENST00000549139 C20orf197Q8N268 126 aa6.94□□□□□ -1.3
CHMP1A-206ENST00000549139 SPANXA2-OT1Q8N9U9 137 aa6.9□□□□□ -1.3
CHMP1A-206ENST00000549139 SPTSSBQ8NFR3 76 aa6.86□□□□□ -1.31
CHMP1A-206ENST00000549139 P0C880 135 aa6.84□□□□□ -1.31
CHMP1A-206ENST00000549139 COX7CP15954 63 aa6.84□□□□□ -1.31
CHMP1A-206ENST00000549139 CHKB-CPT1BH3BT56 60 aa6.83□□□□□ -1.32
CHMP1A-206ENST00000549139 KRTAP3-2Q9BYR7 98 aa6.83□□□□□ -1.32
CHMP1A-206ENST00000549139 R4GN34 69 aa6.79□□□□□ -1.32
CHMP1A-206ENST00000549139 M0QZ58 72 aa6.74□□□□□ -1.33
CHMP1A-206ENST00000549139 KRTAP2-2Q9BYT5 123 aa6.73□□□□□ -1.33
CHMP1A-206ENST00000549139 KRTAP2-1Q9BYU5 128 aa6.73□□□□□ -1.33
CHMP1A-206ENST00000549139 SPRR2EP22531 72 aa6.72□□□□□ -1.33
CHMP1A-206ENST00000549139 SPRR2BP35325 72 aa6.72□□□□□ -1.33
CHMP1A-206ENST00000549139 SPRR2AP35326 72 aa6.72□□□□□ -1.33
CHMP1A-206ENST00000549139 SPRR2FQ96RM1 72 aa6.71□□□□□ -1.34
CHMP1A-206ENST00000549139 H7BZZ5 65 aa6.69□□□□□ -1.34
CHMP1A-206ENST00000549139 PLAC4Q8WY50 150 aa6.68□□□□□ -1.34
CHMP1A-206ENST00000549139 COA5Q86WW8 74 aa6.67□□□□□ -1.34
CHMP1A-206ENST00000549139 ANAPC13Q9BS18 74 aa6.67□□□□□ -1.34
CHMP1A-206ENST00000549139 CYSTM1Q9H1C7 97 aa6.67□□□□□ -1.34
CHMP1A-206ENST00000549139 LCE1AQ5T7P2 110 aa6.62□□□□□ -1.35
CHMP1A-206ENST00000549139 LINC01554Q52M75 96 aa6.61□□□□□ -1.35
CHMP1A-206ENST00000549139 PRO2289Q9P1D8 64 aa6.59□□□□□ -1.35
CHMP1A-206ENST00000549139 MT1XP80297 61 aa6.56□□□□□ -1.36
CHMP1A-206ENST00000549139 CCDC179H3BU77 68 aa6.53□□□□□ -1.36
CHMP1A-206ENST00000549139 SPRR2DP22532 72 aa6.51□□□□□ -1.37
CHMP1A-206ENST00000549139 SEC61GP60059 68 aa6.5□□□□□ -1.37
CHMP1A-206ENST00000549139 KRTAP8-1Q8IUC2 63 aa6.5□□□□□ -1.37
CHMP1A-206ENST00000549139 SERP1Q9Y6X1 66 aa6.5□□□□□ -1.37
CHMP1A-206ENST00000549139 KRTAP13-4Q3LI77 160 aa6.47□□□□□ -1.37
CHMP1A-206ENST00000549139 GPR98Q8WXG9 6306 aa6.47□□□□□ -1.37
CHMP1A-206ENST00000549139 ATP5EP56381 51 aaPredicted RBP6.42□□□□□ -1.38
CHMP1A-206ENST00000549139 KRTAP12-2P59991 146 aa6.39□□□□□ -1.39
CHMP1A-206ENST00000549139 LCE3BQ5TA77 95 aa6.39□□□□□ -1.39
CHMP1A-206ENST00000549139 A0A1B0GU33 70 aa6.37□□□□□ -1.39
CHMP1A-206ENST00000549139 KRTAP4-8A0A0G2JLE6 195 aa6.34□□□□□ -1.39
CHMP1A-206ENST00000549139 A0A1B0GU69 56 aa6.34□□□□□ -1.39
CHMP1A-206ENST00000549139 KRTAP4-8Q9BYQ9 185 aa6.34□□□□□ -1.39
CHMP1A-206ENST00000549139 SPATA8Q6RVD6 105 aa6.32□□□□□ -1.4
CHMP1A-206ENST00000549139 TMEM258P61165 79 aa6.31□□□□□ -1.4
CHMP1A-206ENST00000549139 A0A0D9SG42 100 aa6.27□□□□□ -1.41
CHMP1A-206ENST00000549139 KRTAP10-7P60409 375 aaPredicted RBP6.26□□□□□ -1.41
CHMP1A-206ENST00000549139 KRTAP10-12P60413 245 aa6.26□□□□□ -1.41
CHMP1A-206ENST00000549139 CAMK2N1Q7Z7J9 78 aa6.26□□□□□ -1.41
CHMP1A-206ENST00000549139 DSTQ03001 7570 aaKnown RBP6.23□□□□□ -1.41
CHMP1A-206ENST00000549139 PRR15LQ9BU68 103 aa6.21□□□□□ -1.42
CHMP1A-206ENST00000549139 LINC01558Q9Y6Z2 57 aa6.21□□□□□ -1.42
CHMP1A-206ENST00000549139 SMIM26A0A096LP01 95 aa6.2□□□□□ -1.42
CHMP1A-206ENST00000549139 SPINT4Q6UDR6 99 aa6.19□□□□□ -1.42
CHMP1A-206ENST00000549139 KRTAP12-1P59990 96 aa6.18□□□□□ -1.42
CHMP1A-206ENST00000549139 A8MU10 97 aa6.11□□□□□ -1.43
CHMP1A-206ENST00000549139 KRTAP4-9Q9BYQ8 210 aa6.1□□□□□ -1.43
CHMP1A-206ENST00000549139 UQCR11O14957 56 aa6.02□□□□□ -1.45
CHMP1A-206ENST00000549139 V9GYY9 64 aa5.96□□□□□ -1.46
CHMP1A-206ENST00000549139 Q1T7F1 81 aa5.92□□□□□ -1.46
CHMP1A-206ENST00000549139 LCE1DQ5T752 114 aa5.9□□□□□ -1.46
CHMP1A-206ENST00000549139 LCE5AQ5TCM9 118 aa5.9□□□□□ -1.46
CHMP1A-206ENST00000549139 C10orf95Q9H7T3 257 aa5.9□□□□□ -1.46
CHMP1A-206ENST00000549139 MIR22HGQ0VDD5 57 aa5.88□□□□□ -1.47
CHMP1A-206ENST00000549139 HMCN1Q96RW7 5635 aa5.88□□□□□ -1.47
CHMP1A-206ENST00000549139 PCP4P48539 62 aa5.87□□□□□ -1.47
CHMP1A-206ENST00000549139 KRTAP19-7Q3SYF9 63 aa5.87□□□□□ -1.47
CHMP1A-206ENST00000549139 PSPHP1O15172 72 aa5.86□□□□□ -1.47
CHMP1A-206ENST00000549139 TNP1P09430 55 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms