RNA–Protein interactions for RNA: ENST00000547247.5

SMARCD1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best)

Gene SMARCD1, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-203ENST00000547247 MT2AP02795 61 aa11.02□□□□□ -0.65
SMARCD1-203ENST00000547247 ANAPC13Q9BS18 74 aa10.99□□□□□ -0.65
SMARCD1-203ENST00000547247 KRTAP3-3Q9BYR6 98 aa10.99□□□□□ -0.65
SMARCD1-203ENST00000547247 NDUFC1O43677 76 aa10.94□□□□□ -0.66
SMARCD1-203ENST00000547247 MT1FP04733 61 aa10.94□□□□□ -0.66
SMARCD1-203ENST00000547247 KRTAP10-10P60014 251 aa10.93□□□□□ -0.66
SMARCD1-203ENST00000547247 SPANXA2-OT1Q8N9U9 137 aa10.91□□□□□ -0.66
SMARCD1-203ENST00000547247 ACYP2P14621 99 aa10.89□□□□□ -0.67
SMARCD1-203ENST00000547247 KRTAP9-6A0A140TA67 174 aa10.82□□□□□ -0.68
SMARCD1-203ENST00000547247 FSIP2Q5CZC0 6907 aa10.8□□□□□ -0.68
SMARCD1-203ENST00000547247 CYSTM1Q9H1C7 97 aa10.78□□□□□ -0.68
SMARCD1-203ENST00000547247 H7BZZ5 65 aa10.77□□□□□ -0.69
SMARCD1-203ENST00000547247 KRTAP9-3Q9BYQ3 159 aa10.76□□□□□ -0.69
SMARCD1-203ENST00000547247 CCDC179H3BU77 68 aa10.73□□□□□ -0.69
SMARCD1-203ENST00000547247 CRCT1Q9UGL9 99 aa10.73□□□□□ -0.69
SMARCD1-203ENST00000547247 CHKB-CPT1BH3BT56 60 aa10.69□□□□□ -0.7
SMARCD1-203ENST00000547247 H0YAA0 97 aa10.68□□□□□ -0.7
SMARCD1-203ENST00000547247 SPTSSBQ8NFR3 76 aa10.65□□□□□ -0.7
SMARCD1-203ENST00000547247 ADM2Q7Z4H4 148 aa10.58□□□□□ -0.72
SMARCD1-203ENST00000547247 USH2AO75445 5202 aa10.58□□□□□ -0.72
SMARCD1-203ENST00000547247 LCE2BO14633 110 aa10.57□□□□□ -0.72
SMARCD1-203ENST00000547247 COA5Q86WW8 74 aa10.56□□□□□ -0.72
SMARCD1-203ENST00000547247 CRIPTQ9P021 101 aa10.5□□□□□ -0.73
SMARCD1-203ENST00000547247 KRTAP19-1Q8IUB9 90 aa10.47□□□□□ -0.73
SMARCD1-203ENST00000547247 SPRR2GQ9BYE4 73 aa10.44□□□□□ -0.74
SMARCD1-203ENST00000547247 ATP5EP56381 51 aaPredicted RBP10.43□□□□□ -0.74
SMARCD1-203ENST00000547247 P0C880 135 aa10.42□□□□□ -0.74
SMARCD1-203ENST00000547247 KRTAP3-2Q9BYR7 98 aa10.41□□□□□ -0.74
SMARCD1-203ENST00000547247 SSPOA2VEC9 5147 aa10.41□□□□□ -0.74
SMARCD1-203ENST00000547247 TMEM258P61165 79 aa10.38□□□□□ -0.75
SMARCD1-203ENST00000547247 R4GN34 69 aa10.29□□□□□ -0.76
SMARCD1-203ENST00000547247 KRTAP19-8Q3LI54 63 aa10.28□□□□□ -0.76
SMARCD1-203ENST00000547247 Q5VV11 94 aa10.24□□□□□ -0.77
SMARCD1-203ENST00000547247 M0QZ58 72 aa10.22□□□□□ -0.77
SMARCD1-203ENST00000547247 MT1BP07438 61 aa10.19□□□□□ -0.78
SMARCD1-203ENST00000547247 SEC61GP60059 68 aa10.19□□□□□ -0.78
SMARCD1-203ENST00000547247 PCP4P48539 62 aa10.17□□□□□ -0.78
SMARCD1-203ENST00000547247 SERP1Q9Y6X1 66 aa10.16□□□□□ -0.78
SMARCD1-203ENST00000547247 KRTAP19-6Q3LI70 58 aa10.14□□□□□ -0.79
SMARCD1-203ENST00000547247 FCGBPQ9Y6R7 5405 aaPredicted RBP10.13□□□□□ -0.79
SMARCD1-203ENST00000547247 LINC01554Q52M75 96 aa10.05□□□□□ -0.8
SMARCD1-203ENST00000547247 A0A1B0GU69 56 aa10.03□□□□□ -0.8
SMARCD1-203ENST00000547247 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.99□□□□□ -0.81
SMARCD1-203ENST00000547247 PLAC4Q8WY50 150 aa9.97□□□□□ -0.81
SMARCD1-203ENST00000547247 KRTAP13-4Q3LI77 160 aa9.95□□□□□ -0.82
SMARCD1-203ENST00000547247 A0A1B0GU33 70 aa9.94□□□□□ -0.82
SMARCD1-203ENST00000547247 LINC01558Q9Y6Z2 57 aa9.92□□□□□ -0.82
SMARCD1-203ENST00000547247 PRR15LQ9BU68 103 aa9.9□□□□□ -0.82
SMARCD1-203ENST00000547247 A6NN06 94 aa9.88□□□□□ -0.83
SMARCD1-203ENST00000547247 KRTAP10-5P60370 271 aa9.85□□□□□ -0.83
SMARCD1-203ENST00000547247 SPATA8Q6RVD6 105 aa9.83□□□□□ -0.84
SMARCD1-203ENST00000547247 KRTAP9-7A8MTY7 169 aa9.77□□□□□ -0.85
SMARCD1-203ENST00000547247 MACF1Q9UPN3 7388 aaKnown RBP9.74□□□□□ -0.85
SMARCD1-203ENST00000547247 A0A0D9SG42 100 aa9.73□□□□□ -0.85
SMARCD1-203ENST00000547247 PRO2289Q9P1D8 64 aa9.73□□□□□ -0.85
SMARCD1-203ENST00000547247 V9GYY9 64 aa9.71□□□□□ -0.85
SMARCD1-203ENST00000547247 MT1XP80297 61 aa9.7□□□□□ -0.86
SMARCD1-203ENST00000547247 SMIM26A0A096LP01 95 aa9.69□□□□□ -0.86
SMARCD1-203ENST00000547247 RPS28P62857 69 aaKnown RBP9.69□□□□□ -0.86
SMARCD1-203ENST00000547247 Q1T7F1 81 aa9.67□□□□□ -0.86
SMARCD1-203ENST00000547247 UQCR11O14957 56 aa9.58□□□□□ -0.88
SMARCD1-203ENST00000547247 A8MU10 97 aa9.57□□□□□ -0.88
SMARCD1-203ENST00000547247 SPINT4Q6UDR6 99 aa9.56□□□□□ -0.88
SMARCD1-203ENST00000547247 PSPHP1O15172 72 aa9.55□□□□□ -0.88
SMARCD1-203ENST00000547247 CAMK2N1Q7Z7J9 78 aa9.55□□□□□ -0.88
SMARCD1-203ENST00000547247 SYNE2Q8WXH0 6885 aaKnown RBP9.55□□□□□ -0.88
SMARCD1-203ENST00000547247 KRTAP12-1P59990 96 aa9.54□□□□□ -0.88
SMARCD1-203ENST00000547247 KRTAP12-2P59991 146 aa9.48□□□□□ -0.89
SMARCD1-203ENST00000547247 KRTAP6-3Q3LI67 103 aa9.41□□□□□ -0.9
SMARCD1-203ENST00000547247 MIR22HGQ0VDD5 57 aa9.41□□□□□ -0.9
SMARCD1-203ENST00000547247 SVIPQ8NHG7 77 aa9.36□□□□□ -0.91
SMARCD1-203ENST00000547247 A6NED7 52 aa9.28□□□□□ -0.92
SMARCD1-203ENST00000547247 KRTAP10-7P60409 375 aaPredicted RBP9.27□□□□□ -0.93
SMARCD1-203ENST00000547247 KRTAP10-12P60413 245 aa9.22□□□□□ -0.93
SMARCD1-203ENST00000547247 KMT2DO14686 5537 aa9.17□□□□□ -0.94
SMARCD1-203ENST00000547247 K7ERS5 55 aa9.14□□□□□ -0.95
SMARCD1-203ENST00000547247 KRTAP5-9P26371 169 aa9.12□□□□□ -0.95
SMARCD1-203ENST00000547247 KRTAP4-8A0A0G2JLE6 195 aa9.11□□□□□ -0.95
SMARCD1-203ENST00000547247 KRTAP4-8Q9BYQ9 185 aa9.11□□□□□ -0.95
SMARCD1-203ENST00000547247 KRTAP8-1Q8IUC2 63 aa9.08□□□□□ -0.96
SMARCD1-203ENST00000547247 MUC12Q9UKN1 5478 aa9.08□□□□□ -0.96
SMARCD1-203ENST00000547247 C10orf95Q9H7T3 257 aa9.07□□□□□ -0.96
SMARCD1-203ENST00000547247 CDC42SE1Q9NRR8 79 aa8.99□□□□□ -0.97
SMARCD1-203ENST00000547247 SPRR2FQ96RM1 72 aa8.96□□□□□ -0.97
SMARCD1-203ENST00000547247 TNP1P09430 55 aa8.95□□□□□ -0.98
SMARCD1-203ENST00000547247 NEBP20929 6669 aa8.91□□□□□ -0.98
SMARCD1-203ENST00000547247 MDN1Q9NU22 5596 aa8.87□□□□□ -0.99
SMARCD1-203ENST00000547247 SPRR2EP22531 72 aa8.75□□□□□ -1.01
SMARCD1-203ENST00000547247 SPRR2BP35325 72 aa8.75□□□□□ -1.01
SMARCD1-203ENST00000547247 SPRR2AP35326 72 aa8.75□□□□□ -1.01
SMARCD1-203ENST00000547247 KRTAP25-1Q3LHN0 102 aa8.73□□□□□ -1.01
SMARCD1-203ENST00000547247 LCE3AQ5TA76 89 aa8.69□□□□□ -1.02
SMARCD1-203ENST00000547247 LCE1AQ5T7P2 110 aa8.67□□□□□ -1.02
SMARCD1-203ENST00000547247 KRTAP19-7Q3SYF9 63 aa8.65□□□□□ -1.02
SMARCD1-203ENST00000547247 ROMO1P60602 79 aa8.61□□□□□ -1.03
SMARCD1-203ENST00000547247 BRK1Q8WUW1 75 aa8.61□□□□□ -1.03
SMARCD1-203ENST00000547247 KRTAP19-5Q3LI72 72 aa8.6□□□□□ -1.03
SMARCD1-203ENST00000547247 KRTAP20-1Q3LI63 56 aa8.59□□□□□ -1.03
SMARCD1-203ENST00000547247 MT1EP04732 61 aa8.56□□□□□ -1.04
SMARCD1-203ENST00000547247 SPRR2DP22532 72 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 150.6 ms