RNA–Protein interactions for RNA: ENST00000545425.2

FOXA1-202, Transcript of forkhead box A1, humanhuman

TSL 2

Gene FOXA1, Length 1,806 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-202ENST00000545425 C9orf92A6NGG3 77 aa12.52□□□□□ -0.41
FOXA1-202ENST00000545425 PKHD1L1Q86WI1 4243 aa12.52□□□□□ -0.41
FOXA1-202ENST00000545425 FAT3Q8TDW7 4589 aa12.47□□□□□ -0.41
FOXA1-202ENST00000545425 RBM12B-AS1Q9P1G2 102 aa12.46□□□□□ -0.42
FOXA1-202ENST00000545425 MT1HL1P0DM35 61 aa12.4□□□□□ -0.42
FOXA1-202ENST00000545425 COX6B2Q6YFQ2 88 aa12.37□□□□□ -0.43
FOXA1-202ENST00000545425 KRTAP3-1Q9BYR8 98 aa12.37□□□□□ -0.43
FOXA1-202ENST00000545425 KRTAP10-8P60410 259 aa12.3□□□□□ -0.44
FOXA1-202ENST00000545425 A0A1B0GU33 70 aa12.24□□□□□ -0.45
FOXA1-202ENST00000545425 HMCN2Q8NDA2 5059 aa12.22□□□□□ -0.45
FOXA1-202ENST00000545425 H1FX-AS1Q4G0G2 97 aa12.21□□□□□ -0.46
FOXA1-202ENST00000545425 TNXBP22105 4242 aa12.2□□□□□ -0.46
FOXA1-202ENST00000545425 RPL37P61927 97 aaKnown RBP12.18□□□□□ -0.46
FOXA1-202ENST00000545425 H0YAA0 97 aa12.16□□□□□ -0.46
FOXA1-202ENST00000545425 PRAC1Q96KF2 57 aa12.08□□□□□ -0.48
FOXA1-202ENST00000545425 ADM2Q7Z4H4 148 aa12.02□□□□□ -0.48
FOXA1-202ENST00000545425 XP32Q5T750 250 aa12.02□□□□□ -0.49
FOXA1-202ENST00000545425 K7ERS5 55 aa12□□□□□ -0.49
FOXA1-202ENST00000545425 UBR4Q5T4S7 5183 aa11.94□□□□□ -0.5
FOXA1-202ENST00000545425 LINC01554Q52M75 96 aa11.93□□□□□ -0.5
FOXA1-202ENST00000545425 S4R3F8 94 aa11.9□□□□□ -0.5
FOXA1-202ENST00000545425 KRTAP3-3Q9BYR6 98 aa11.88□□□□□ -0.51
FOXA1-202ENST00000545425 CSAG1Q6PB30 78 aa11.86□□□□□ -0.51
FOXA1-202ENST00000545425 LRP2P98164 4655 aa11.85□□□□□ -0.51
FOXA1-202ENST00000545425 KRTAP10-6P60371 365 aaPredicted RBP11.8□□□□□ -0.52
FOXA1-202ENST00000545425 TPRXLQ17RH7 258 aa11.74□□□□□ -0.53
FOXA1-202ENST00000545425 KRTAP3-2Q9BYR7 98 aa11.72□□□□□ -0.53
FOXA1-202ENST00000545425 KRTAP25-1Q3LHN0 102 aa11.7□□□□□ -0.54
FOXA1-202ENST00000545425 LPAP08519 4548 aa11.64□□□□□ -0.55
FOXA1-202ENST00000545425 RNF213Q63HN8 5207 aa11.61□□□□□ -0.55
FOXA1-202ENST00000545425 ROMO1P60602 79 aa11.6□□□□□ -0.55
FOXA1-202ENST00000545425 KRTAP13-4Q3LI77 160 aa11.54□□□□□ -0.56
FOXA1-202ENST00000545425 P0C880 135 aa11.48□□□□□ -0.57
FOXA1-202ENST00000545425 M0QZ58 72 aa11.45□□□□□ -0.58
FOXA1-202ENST00000545425 A0A0D9SG42 100 aa11.42□□□□□ -0.58
FOXA1-202ENST00000545425 SEC61BP60468 96 aaKnown RBP11.33□□□□□ -0.6
FOXA1-202ENST00000545425 MUC2Q02817 5179 aa11.32□□□□□ -0.6
FOXA1-202ENST00000545425 KRTAP12-1P59990 96 aa11.23□□□□□ -0.61
FOXA1-202ENST00000545425 KRTAP12-2P59991 146 aa11.21□□□□□ -0.61
FOXA1-202ENST00000545425 MUC17Q685J3 4493 aa11.17□□□□□ -0.62
FOXA1-202ENST00000545425 CRIPTQ9P021 101 aa11.14□□□□□ -0.63
FOXA1-202ENST00000545425 SPINT4Q6UDR6 99 aa11.13□□□□□ -0.63
FOXA1-202ENST00000545425 R4GN34 69 aa11□□□□□ -0.65
FOXA1-202ENST00000545425 FAT4Q6V0I7 4981 aa10.99□□□□□ -0.65
FOXA1-202ENST00000545425 KRTAP4-1Q9BYQ7 146 aa10.94□□□□□ -0.66
FOXA1-202ENST00000545425 LCE2AQ5TA79 106 aaPredicted RBP10.93□□□□□ -0.66
FOXA1-202ENST00000545425 C10orf95Q9H7T3 257 aa10.86□□□□□ -0.67
FOXA1-202ENST00000545425 KRTAP19-2Q3LHN2 52 aa10.77□□□□□ -0.68
FOXA1-202ENST00000545425 LCE2CQ5TA81 110 aa10.67□□□□□ -0.7
FOXA1-202ENST00000545425 LORP23490 312 aaPredicted RBP10.62□□□□□ -0.71
FOXA1-202ENST00000545425 KRTAP15-1Q3LI76 137 aa10.61□□□□□ -0.71
FOXA1-202ENST00000545425 H3BS24 57 aa10.6□□□□□ -0.71
FOXA1-202ENST00000545425 KRTAP9-2Q9BYQ4 174 aa10.56□□□□□ -0.72
FOXA1-202ENST00000545425 MT1HP80294 61 aa10.54□□□□□ -0.72
FOXA1-202ENST00000545425 PP632Q6XCG6 107 aa10.5□□□□□ -0.73
FOXA1-202ENST00000545425 CAMK2N1Q7Z7J9 78 aa10.43□□□□□ -0.74
FOXA1-202ENST00000545425 M0R2T5 61 aa10.4□□□□□ -0.74
FOXA1-202ENST00000545425 FLGP20930 4061 aaPredicted RBP10.36□□□□□ -0.75
FOXA1-202ENST00000545425 LCE2DQ5TA82 110 aaPredicted RBP10.35□□□□□ -0.75
FOXA1-202ENST00000545425 KRTAP23-1A1A580 65 aa10.26□□□□□ -0.77
FOXA1-202ENST00000545425 PLAC4Q8WY50 150 aa10.22□□□□□ -0.77
FOXA1-202ENST00000545425 KRTAP9-6A0A140TA67 174 aa10.19□□□□□ -0.78
FOXA1-202ENST00000545425 NDUFAF8A1L188 74 aa10.19□□□□□ -0.78
FOXA1-202ENST00000545425 TNP1P09430 55 aa10.14□□□□□ -0.79
FOXA1-202ENST00000545425 FSIP2Q5CZC0 6907 aa10.1□□□□□ -0.79
FOXA1-202ENST00000545425 SPRR2GQ9BYE4 73 aa10.08□□□□□ -0.8
FOXA1-202ENST00000545425 CRCT1Q9UGL9 99 aa10.03□□□□□ -0.8
FOXA1-202ENST00000545425 KRTAP9-8Q9BYQ0 159 aa9.98□□□□□ -0.81
FOXA1-202ENST00000545425 KRTAP19-1Q8IUB9 90 aa9.87□□□□□ -0.83
FOXA1-202ENST00000545425 MT2AP02795 61 aa9.85□□□□□ -0.83
FOXA1-202ENST00000545425 LUZP6Q538Z0 58 aa9.83□□□□□ -0.84
FOXA1-202ENST00000545425 MT1FP04733 61 aa9.76□□□□□ -0.85
FOXA1-202ENST00000545425 KRTAP10-10P60014 251 aa9.76□□□□□ -0.85
FOXA1-202ENST00000545425 KRTAP9-3Q9BYQ3 159 aa9.68□□□□□ -0.86
FOXA1-202ENST00000545425 KRTAP19-8Q3LI54 63 aa9.67□□□□□ -0.86
FOXA1-202ENST00000545425 USH2AO75445 5202 aa9.64□□□□□ -0.87
FOXA1-202ENST00000545425 SPRR5A0A1B0GTR4 108 aa9.63□□□□□ -0.87
FOXA1-202ENST00000545425 LCE2BO14633 110 aa9.59□□□□□ -0.88
FOXA1-202ENST00000545425 SSPOA2VEC9 5147 aa9.53□□□□□ -0.88
FOXA1-202ENST00000545425 LCE3AQ5TA76 89 aa9.42□□□□□ -0.9
FOXA1-202ENST00000545425 KRTAP8-1Q8IUC2 63 aa9.39□□□□□ -0.91
FOXA1-202ENST00000545425 MT1BP07438 61 aa9.38□□□□□ -0.91
FOXA1-202ENST00000545425 A0A0A0MQY5 61 aa9.33□□□□□ -0.92
FOXA1-202ENST00000545425 FCGBPQ9Y6R7 5405 aaPredicted RBP9.32□□□□□ -0.92
FOXA1-202ENST00000545425 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.31□□□□□ -0.92
FOXA1-202ENST00000545425 KRTAP10-5P60370 271 aa9.31□□□□□ -0.92
FOXA1-202ENST00000545425 MT1XP80297 61 aa9.29□□□□□ -0.92
FOXA1-202ENST00000545425 KRTAP19-6Q3LI70 58 aa9.28□□□□□ -0.92
FOXA1-202ENST00000545425 PRO2289Q9P1D8 64 aa9.21□□□□□ -0.94
FOXA1-202ENST00000545425 KRTAP10-12P60413 245 aa9.18□□□□□ -0.94
FOXA1-202ENST00000545425 KRTAP9-7A8MTY7 169 aa9.17□□□□□ -0.94
FOXA1-202ENST00000545425 MACF1Q9UPN3 7388 aaKnown RBP9.08□□□□□ -0.96
FOXA1-202ENST00000545425 KRTAP12-3P60328 96 aa9.08□□□□□ -0.96
FOXA1-202ENST00000545425 SYNE2Q8WXH0 6885 aaKnown RBP8.98□□□□□ -0.97
FOXA1-202ENST00000545425 KRTAP10-7P60409 375 aaPredicted RBP8.93□□□□□ -0.98
FOXA1-202ENST00000545425 KRTAP6-3Q3LI67 103 aa8.76□□□□□ -1.01
FOXA1-202ENST00000545425 KRTAP19-5Q3LI72 72 aa8.61□□□□□ -1.03
FOXA1-202ENST00000545425 KRTAP19-4Q3LI73 84 aa8.61□□□□□ -1.03
FOXA1-202ENST00000545425 INE1O15225 51 aa8.57□□□□□ -1.04
FOXA1-202ENST00000545425 LCE3CQ5T5A8 94 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 158.1 ms