RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 FAT3Q8TDW7 4589 aa5.25□□□□□ -1.57
TOP3A-208ENST00000542570 DNAH2Q9P225 4427 aa5.24□□□□□ -1.57
TOP3A-208ENST00000542570 MT1HL1P0DM35 61 aa5.24□□□□□ -1.57
TOP3A-208ENST00000542570 DNAH6Q9C0G6 4158 aa5.24□□□□□ -1.57
TOP3A-208ENST00000542570 TPRXLQ17RH7 258 aa5.24□□□□□ -1.57
TOP3A-208ENST00000542570 DNAH17Q9UFH2 4485 aa5.21□□□□□ -1.57
TOP3A-208ENST00000542570 LRP1Q07954 4544 aaKnown RBP5.2□□□□□ -1.58
TOP3A-208ENST00000542570 VPS13BQ7Z7G8 4022 aa5.19□□□□□ -1.58
TOP3A-208ENST00000542570 PKHD1P08F94 4074 aa5.18□□□□□ -1.58
TOP3A-208ENST00000542570 SACSQ9NZJ4 4579 aa5.17□□□□□ -1.58
TOP3A-208ENST00000542570 FRAS1Q86XX4 4008 aa5.17□□□□□ -1.58
TOP3A-208ENST00000542570 P0C880 135 aa5.15□□□□□ -1.59
TOP3A-208ENST00000542570 APOBP04114 4563 aaKnown RBP5.15□□□□□ -1.59
TOP3A-208ENST00000542570 KRTAP3-1Q9BYR8 98 aa5.13□□□□□ -1.59
TOP3A-208ENST00000542570 HECTD4Q9Y4D8 3996 aa5.13□□□□□ -1.59
TOP3A-208ENST00000542570 KRTAP17-1Q9BYP8 105 aa5.11□□□□□ -1.59
TOP3A-208ENST00000542570 ALMS1Q8TCU4 4167 aa5.1□□□□□ -1.59
TOP3A-208ENST00000542570 RYR2Q92736 4967 aa5.06□□□□□ -1.6
TOP3A-208ENST00000542570 H0YAA0 97 aa5.04□□□□□ -1.6
TOP3A-208ENST00000542570 FAT2Q9NYQ8 4349 aa5.04□□□□□ -1.6
TOP3A-208ENST00000542570 A0A0A0MQY5 61 aa5.03□□□□□ -1.6
TOP3A-208ENST00000542570 KRTAP3-3Q9BYR6 98 aa5.02□□□□□ -1.61
TOP3A-208ENST00000542570 KRTAP3-2Q9BYR7 98 aa5.02□□□□□ -1.61
TOP3A-208ENST00000542570 ROMO1P60602 79 aa5□□□□□ -1.61
TOP3A-208ENST00000542570 KRTAP10-10P60014 251 aa5□□□□□ -1.61
TOP3A-208ENST00000542570 PLAC4Q8WY50 150 aa4.99□□□□□ -1.61
TOP3A-208ENST00000542570 HERC2O95714 4834 aa4.99□□□□□ -1.61
TOP3A-208ENST00000542570 EPPK1P58107 5090 aaKnown RBP4.96□□□□□ -1.62
TOP3A-208ENST00000542570 LRP2P98164 4655 aa4.95□□□□□ -1.62
TOP3A-208ENST00000542570 C10orf95Q9H7T3 257 aa4.94□□□□□ -1.62
TOP3A-208ENST00000542570 KRTAP25-1Q3LHN0 102 aa4.92□□□□□ -1.62
TOP3A-208ENST00000542570 PKHD1L1Q86WI1 4243 aa4.87□□□□□ -1.63
TOP3A-208ENST00000542570 KRTAP13-4Q3LI77 160 aa4.86□□□□□ -1.63
TOP3A-208ENST00000542570 LCE2DQ5TA82 110 aaPredicted RBP4.86□□□□□ -1.63
TOP3A-208ENST00000542570 PKD1P98161 4303 aa4.84□□□□□ -1.63
TOP3A-208ENST00000542570 HSPG2P98160 4391 aa4.83□□□□□ -1.64
TOP3A-208ENST00000542570 KRTAP10-6P60371 365 aaPredicted RBP4.82□□□□□ -1.64
TOP3A-208ENST00000542570 KRTAP4-1Q9BYQ7 146 aa4.82□□□□□ -1.64
TOP3A-208ENST00000542570 KRTAP12-2P59991 146 aa4.82□□□□□ -1.64
TOP3A-208ENST00000542570 LUZP6Q538Z0 58 aa4.81□□□□□ -1.64
TOP3A-208ENST00000542570 PCLOQ9Y6V0 5065 aa4.81□□□□□ -1.64
TOP3A-208ENST00000542570 NDUFAF8A1L188 74 aa4.8□□□□□ -1.64
TOP3A-208ENST00000542570 LPAP08519 4548 aa4.78□□□□□ -1.64
TOP3A-208ENST00000542570 ABCA13Q86UQ4 5058 aa4.77□□□□□ -1.65
TOP3A-208ENST00000542570 TNP1P09430 55 aa4.73□□□□□ -1.65
TOP3A-208ENST00000542570 LORP23490 312 aaPredicted RBP4.72□□□□□ -1.65
TOP3A-208ENST00000542570 KRTAP12-1P59990 96 aa4.72□□□□□ -1.65
TOP3A-208ENST00000542570 BIRC6Q9NR09 4857 aa4.71□□□□□ -1.65
TOP3A-208ENST00000542570 HERC1Q15751 4861 aa4.7□□□□□ -1.66
TOP3A-208ENST00000542570 RNF213Q63HN8 5207 aa4.67□□□□□ -1.66
TOP3A-208ENST00000542570 MUC2Q02817 5179 aa4.65□□□□□ -1.66
TOP3A-208ENST00000542570 TNXBP22105 4242 aa4.63□□□□□ -1.67
TOP3A-208ENST00000542570 FSIP2Q5CZC0 6907 aa4.59□□□□□ -1.68
TOP3A-208ENST00000542570 UBR4Q5T4S7 5183 aa4.56□□□□□ -1.68
TOP3A-208ENST00000542570 FAT4Q6V0I7 4981 aa4.5□□□□□ -1.69
TOP3A-208ENST00000542570 PRO2289Q9P1D8 64 aa4.47□□□□□ -1.69
TOP3A-208ENST00000542570 MT1HP80294 61 aa4.47□□□□□ -1.69
TOP3A-208ENST00000542570 LCE2CQ5TA81 110 aa4.43□□□□□ -1.7
TOP3A-208ENST00000542570 LCE2BO14633 110 aa4.4□□□□□ -1.7
TOP3A-208ENST00000542570 PP632Q6XCG6 107 aa4.39□□□□□ -1.71
TOP3A-208ENST00000542570 LCE2AQ5TA79 106 aaPredicted RBP4.38□□□□□ -1.71
TOP3A-208ENST00000542570 MT2AP02795 61 aa4.37□□□□□ -1.71
TOP3A-208ENST00000542570 MT1FP04733 61 aa4.36□□□□□ -1.71
TOP3A-208ENST00000542570 KRTAP15-1Q3LI76 137 aa4.36□□□□□ -1.71
TOP3A-208ENST00000542570 HMCN2Q8NDA2 5059 aa4.27□□□□□ -1.73
TOP3A-208ENST00000542570 KRTAP10-12P60413 245 aa4.22□□□□□ -1.73
TOP3A-208ENST00000542570 LCE3AQ5TA76 89 aa4.21□□□□□ -1.74
TOP3A-208ENST00000542570 KRTAP19-1Q8IUB9 90 aa4.18□□□□□ -1.74
TOP3A-208ENST00000542570 MUC17Q685J3 4493 aa4.17□□□□□ -1.74
TOP3A-208ENST00000542570 KRTAP19-2Q3LHN2 52 aa4.17□□□□□ -1.74
TOP3A-208ENST00000542570 SPRR2GQ9BYE4 73 aa4.16□□□□□ -1.74
TOP3A-208ENST00000542570 KRTAP23-1A1A580 65 aa4.15□□□□□ -1.74
TOP3A-208ENST00000542570 KRTAP9-8Q9BYQ0 159 aa4.14□□□□□ -1.75
TOP3A-208ENST00000542570 CRCT1Q9UGL9 99 aa4.14□□□□□ -1.75
TOP3A-208ENST00000542570 KRTAP12-3P60328 96 aa4.1□□□□□ -1.75
TOP3A-208ENST00000542570 FLGP20930 4061 aaPredicted RBP4.08□□□□□ -1.76
TOP3A-208ENST00000542570 USH2AO75445 5202 aa4.07□□□□□ -1.76
TOP3A-208ENST00000542570 OBSCNQ5VST9 7968 aa4.02□□□□□ -1.77
TOP3A-208ENST00000542570 MT1BP07438 61 aa4□□□□□ -1.77
TOP3A-208ENST00000542570 KRTAP10-7P60409 375 aaPredicted RBP4□□□□□ -1.77
TOP3A-208ENST00000542570 KRTAP8-1Q8IUC2 63 aa3.99□□□□□ -1.77
TOP3A-208ENST00000542570 KRTAP9-3Q9BYQ3 159 aa3.98□□□□□ -1.77
TOP3A-208ENST00000542570 KRTAP4-8A0A0G2JLE6 195 aa3.96□□□□□ -1.78
TOP3A-208ENST00000542570 KRTAP4-8Q9BYQ9 185 aa3.96□□□□□ -1.78
TOP3A-208ENST00000542570 MT1XP80297 61 aa3.94□□□□□ -1.78
TOP3A-208ENST00000542570 KRTAP19-8Q3LI54 63 aa3.93□□□□□ -1.78
TOP3A-208ENST00000542570 KRTAP10-5P60370 271 aa3.91□□□□□ -1.78
TOP3A-208ENST00000542570 KRTAP19-5Q3LI72 72 aa3.9□□□□□ -1.78
TOP3A-208ENST00000542570 SPRR2FQ96RM1 72 aa3.86□□□□□ -1.79
TOP3A-208ENST00000542570 DSTQ03001 7570 aaKnown RBP3.85□□□□□ -1.79
TOP3A-208ENST00000542570 SYNE1Q8NF91 8797 aaKnown RBP3.84□□□□□ -1.79
TOP3A-208ENST00000542570 INE1O15225 51 aa3.84□□□□□ -1.79
TOP3A-208ENST00000542570 KMT2DO14686 5537 aa3.82□□□□□ -1.8
TOP3A-208ENST00000542570 FCGBPQ9Y6R7 5405 aaPredicted RBP3.73□□□□□ -1.81
TOP3A-208ENST00000542570 KRTAP4-7Q9BYR0 210 aa3.7□□□□□ -1.82
TOP3A-208ENST00000542570 KRTAP9-2Q9BYQ4 174 aa3.65□□□□□ -1.82
TOP3A-208ENST00000542570 LCE3CQ5T5A8 94 aa3.64□□□□□ -1.83
TOP3A-208ENST00000542570 SPRR5A0A1B0GTR4 108 aa3.61□□□□□ -1.83
TOP3A-208ENST00000542570 SYNE2Q8WXH0 6885 aaKnown RBP3.6□□□□□ -1.83
TOP3A-208ENST00000542570 MUC12Q9UKN1 5478 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms