RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 RNF213Q63HN8 5207 aa8.76□□□□□ -1.01
CLIP1-215ENST00000541108 SPTSSBQ8NFR3 76 aa8.75□□□□□ -1.01
CLIP1-215ENST00000541108 LCA10Q71F78 164 aa8.75□□□□□ -1.01
CLIP1-215ENST00000541108 SMIM26A0A096LP01 95 aa8.73□□□□□ -1.01
CLIP1-215ENST00000541108 KRTAP3-3Q9BYR6 98 aa8.71□□□□□ -1.02
CLIP1-215ENST00000541108 LCE2CQ5TA81 110 aa8.67□□□□□ -1.02
CLIP1-215ENST00000541108 SVIPQ8NHG7 77 aa8.64□□□□□ -1.03
CLIP1-215ENST00000541108 CSAG1Q6PB30 78 aa8.63□□□□□ -1.03
CLIP1-215ENST00000541108 Q1T7F1 81 aa8.61□□□□□ -1.03
CLIP1-215ENST00000541108 V9GYY9 64 aa8.61□□□□□ -1.03
CLIP1-215ENST00000541108 FLGP20930 4061 aaPredicted RBP8.59□□□□□ -1.03
CLIP1-215ENST00000541108 LINC01558Q9Y6Z2 57 aa8.57□□□□□ -1.04
CLIP1-215ENST00000541108 FAT4Q6V0I7 4981 aa8.52□□□□□ -1.05
CLIP1-215ENST00000541108 MT1HP80294 61 aa8.51□□□□□ -1.05
CLIP1-215ENST00000541108 SEC61GP60059 68 aa8.48□□□□□ -1.05
CLIP1-215ENST00000541108 A0A1B0GU69 56 aa8.47□□□□□ -1.05
CLIP1-215ENST00000541108 H0YAA0 97 aa8.46□□□□□ -1.06
CLIP1-215ENST00000541108 PRR15LQ9BU68 103 aa8.46□□□□□ -1.06
CLIP1-215ENST00000541108 M0R2T5 61 aa8.42□□□□□ -1.06
CLIP1-215ENST00000541108 PSPHP1O15172 72 aa8.4□□□□□ -1.06
CLIP1-215ENST00000541108 KRTAP3-2Q9BYR7 98 aa8.37□□□□□ -1.07
CLIP1-215ENST00000541108 ADM2Q7Z4H4 148 aa8.36□□□□□ -1.07
CLIP1-215ENST00000541108 KRTAP10-6P60371 365 aaPredicted RBP8.35□□□□□ -1.07
CLIP1-215ENST00000541108 Q5VV11 94 aa8.35□□□□□ -1.07
CLIP1-215ENST00000541108 P0C880 135 aa8.28□□□□□ -1.08
CLIP1-215ENST00000541108 LCE2AQ5TA79 106 aaPredicted RBP8.28□□□□□ -1.08
CLIP1-215ENST00000541108 A0A1B0GU33 70 aa8.26□□□□□ -1.09
CLIP1-215ENST00000541108 UQCR11O14957 56 aa8.21□□□□□ -1.09
CLIP1-215ENST00000541108 KRTAP9-8Q9BYQ0 159 aa8.19□□□□□ -1.1
CLIP1-215ENST00000541108 LORP23490 312 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-215ENST00000541108 A6NED7 52 aa8.17□□□□□ -1.1
CLIP1-215ENST00000541108 M0QZ58 72 aa8.14□□□□□ -1.11
CLIP1-215ENST00000541108 CRIPTQ9P021 101 aa8.14□□□□□ -1.11
CLIP1-215ENST00000541108 MT2AP02795 61 aa8.13□□□□□ -1.11
CLIP1-215ENST00000541108 R4GN34 69 aa8.11□□□□□ -1.11
CLIP1-215ENST00000541108 MIR22HGQ0VDD5 57 aa8.08□□□□□ -1.12
CLIP1-215ENST00000541108 SPATA8Q6RVD6 105 aa8.08□□□□□ -1.12
CLIP1-215ENST00000541108 MT1FP04733 61 aa8.07□□□□□ -1.12
CLIP1-215ENST00000541108 KRTAP10-10P60014 251 aa8.07□□□□□ -1.12
CLIP1-215ENST00000541108 KRTAP13-4Q3LI77 160 aa8.07□□□□□ -1.12
CLIP1-215ENST00000541108 CDC42SE1Q9NRR8 79 aa8.03□□□□□ -1.12
CLIP1-215ENST00000541108 BRK1Q8WUW1 75 aa7.98□□□□□ -1.13
CLIP1-215ENST00000541108 SPRR2GQ9BYE4 73 aa7.96□□□□□ -1.13
CLIP1-215ENST00000541108 A8MU10 97 aa7.93□□□□□ -1.14
CLIP1-215ENST00000541108 KRTAP19-1Q8IUB9 90 aa7.92□□□□□ -1.14
CLIP1-215ENST00000541108 KRTAP9-3Q9BYQ3 159 aa7.9□□□□□ -1.14
CLIP1-215ENST00000541108 A0A0D9SG42 100 aa7.89□□□□□ -1.15
CLIP1-215ENST00000541108 LINC01554Q52M75 96 aa7.89□□□□□ -1.15
CLIP1-215ENST00000541108 A6NN06 94 aa7.85□□□□□ -1.15
CLIP1-215ENST00000541108 KRTAP12-1P59990 96 aa7.79□□□□□ -1.16
CLIP1-215ENST00000541108 PRO0628Q9UI54 55 aa7.78□□□□□ -1.16
CLIP1-215ENST00000541108 K7ERS5 55 aa7.77□□□□□ -1.17
CLIP1-215ENST00000541108 KRTAP19-8Q3LI54 63 aa7.76□□□□□ -1.17
CLIP1-215ENST00000541108 SPINT4Q6UDR6 99 aa7.75□□□□□ -1.17
CLIP1-215ENST00000541108 KRTAP12-2P59991 146 aa7.74□□□□□ -1.17
CLIP1-215ENST00000541108 LCE2BO14633 110 aa7.67□□□□□ -1.18
CLIP1-215ENST00000541108 PLAC4Q8WY50 150 aa7.67□□□□□ -1.18
CLIP1-215ENST00000541108 MT1BP07438 61 aa7.63□□□□□ -1.19
CLIP1-215ENST00000541108 LCE2DQ5TA82 110 aaPredicted RBP7.58□□□□□ -1.2
CLIP1-215ENST00000541108 PMAIP1Q13794 54 aa7.57□□□□□ -1.2
CLIP1-215ENST00000541108 CAMK2N1Q7Z7J9 78 aa7.57□□□□□ -1.2
CLIP1-215ENST00000541108 USH2AO75445 5202 aa7.44□□□□□ -1.22
CLIP1-215ENST00000541108 ROMO1P60602 79 aa7.41□□□□□ -1.22
CLIP1-215ENST00000541108 C10orf95Q9H7T3 257 aa7.37□□□□□ -1.23
CLIP1-215ENST00000541108 MT1XP80297 61 aa7.36□□□□□ -1.23
CLIP1-215ENST00000541108 PRO2289Q9P1D8 64 aa7.36□□□□□ -1.23
CLIP1-215ENST00000541108 KRTAP10-5P60370 271 aa7.35□□□□□ -1.23
CLIP1-215ENST00000541108 KRTAP9-2Q9BYQ4 174 aa7.3□□□□□ -1.24
CLIP1-215ENST00000541108 KRTAP19-6Q3LI70 58 aa7.28□□□□□ -1.24
CLIP1-215ENST00000541108 FSIP2Q5CZC0 6907 aa7.23□□□□□ -1.25
CLIP1-215ENST00000541108 SSPOA2VEC9 5147 aa7.21□□□□□ -1.26
CLIP1-215ENST00000541108 TNP1P09430 55 aa7.21□□□□□ -1.26
CLIP1-215ENST00000541108 KTN1-AS1Q86SY8 53 aa7.21□□□□□ -1.26
CLIP1-215ENST00000541108 KRTAP25-1Q3LHN0 102 aa7.2□□□□□ -1.26
CLIP1-215ENST00000541108 KRTAP10-7P60409 375 aaPredicted RBP7.04□□□□□ -1.28
CLIP1-215ENST00000541108 CRCT1Q9UGL9 99 aa7.04□□□□□ -1.28
CLIP1-215ENST00000541108 PRAC1Q96KF2 57 aa7.03□□□□□ -1.28
CLIP1-215ENST00000541108 KRTAP10-12P60413 245 aa7.01□□□□□ -1.29
CLIP1-215ENST00000541108 KRTAP23-1A1A580 65 aa7□□□□□ -1.29
CLIP1-215ENST00000541108 PP632Q6XCG6 107 aa6.96□□□□□ -1.3
CLIP1-215ENST00000541108 FCGBPQ9Y6R7 5405 aaPredicted RBP6.95□□□□□ -1.3
CLIP1-215ENST00000541108 LCE3AQ5TA76 89 aa6.87□□□□□ -1.31
CLIP1-215ENST00000541108 KRTAP4-8A0A0G2JLE6 195 aa6.8□□□□□ -1.32
CLIP1-215ENST00000541108 KRTAP4-8Q9BYQ9 185 aa6.8□□□□□ -1.32
CLIP1-215ENST00000541108 KRTAP8-1Q8IUC2 63 aa6.77□□□□□ -1.32
CLIP1-215ENST00000541108 KRTAP9-6A0A140TA67 174 aa6.77□□□□□ -1.33
CLIP1-215ENST00000541108 KMT2DO14686 5537 aa6.73□□□□□ -1.33
CLIP1-215ENST00000541108 KRTAP12-3P60328 96 aa6.63□□□□□ -1.35
CLIP1-215ENST00000541108 MACF1Q9UPN3 7388 aaKnown RBP6.63□□□□□ -1.35
CLIP1-215ENST00000541108 KRTAP19-5Q3LI72 72 aa6.61□□□□□ -1.35
CLIP1-215ENST00000541108 KRTAP19-7Q3SYF9 63 aa6.58□□□□□ -1.36
CLIP1-215ENST00000541108 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.51□□□□□ -1.37
CLIP1-215ENST00000541108 KRTAP15-1Q3LI76 137 aa6.48□□□□□ -1.37
CLIP1-215ENST00000541108 MT1EP04732 61 aa6.46□□□□□ -1.37
CLIP1-215ENST00000541108 KRTAP5-9P26371 169 aa6.43□□□□□ -1.38
CLIP1-215ENST00000541108 SYNE2Q8WXH0 6885 aaKnown RBP6.43□□□□□ -1.38
CLIP1-215ENST00000541108 SPRR2FQ96RM1 72 aa6.42□□□□□ -1.38
CLIP1-215ENST00000541108 KRTAP6-3Q3LI67 103 aa6.36□□□□□ -1.39
CLIP1-215ENST00000541108 KRTAP19-4Q3LI73 84 aa6.35□□□□□ -1.39
CLIP1-215ENST00000541108 MT1LQ93083 61 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms