RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 H3BPC8 53 aa5.35□□□□□ -1.55
VPS33A-204ENST00000540669 SCGB1A1P11684 91 aa5.35□□□□□ -1.55
VPS33A-204ENST00000540669 C5orf47Q569G3 176 aa5.35□□□□□ -1.55
VPS33A-204ENST00000540669 KRTAP9-3Q9BYQ3 159 aa5.35□□□□□ -1.55
VPS33A-204ENST00000540669 CYP4F30PQ9H0H9 118 aa5.35□□□□□ -1.55
VPS33A-204ENST00000540669 IGKV2D-30A0A075B6S6 120 aa5.33□□□□□ -1.56
VPS33A-204ENST00000540669 SERP2Q8N6R1 65 aa5.33□□□□□ -1.56
VPS33A-204ENST00000540669 FAM236DA0A1B0GTK5 79 aa5.3□□□□□ -1.56
VPS33A-204ENST00000540669 FAM236CP0DP71 79 aa5.3□□□□□ -1.56
VPS33A-204ENST00000540669 MP68P56378 58 aa5.3□□□□□ -1.56
VPS33A-204ENST00000540669 C1orf64Q8NEQ6 169 aa5.3□□□□□ -1.56
VPS33A-204ENST00000540669 RBM12B-AS1Q9P1G2 102 aa5.3□□□□□ -1.56
VPS33A-204ENST00000540669 M0R2T5 61 aa5.29□□□□□ -1.56
VPS33A-204ENST00000540669 LINC00208Q96KT6 92 aa5.29□□□□□ -1.56
VPS33A-204ENST00000540669 COX7CP15954 63 aa5.27□□□□□ -1.57
VPS33A-204ENST00000540669 KLKP1Q107X0 134 aa5.27□□□□□ -1.57
VPS33A-204ENST00000540669 MT1HP80294 61 aa5.24□□□□□ -1.57
VPS33A-204ENST00000540669 C4orf26Q17RF5 130 aa5.23□□□□□ -1.57
VPS33A-204ENST00000540669 C20orf197Q8N268 126 aa5.22□□□□□ -1.57
VPS33A-204ENST00000540669 ANAPC13Q9BS18 74 aa5.21□□□□□ -1.58
VPS33A-204ENST00000540669 CYSTM1Q9H1C7 97 aa5.19□□□□□ -1.58
VPS33A-204ENST00000540669 SNURFQ9Y675 71 aa5.19□□□□□ -1.58
VPS33A-204ENST00000540669 A0A0A0MQY5 61 aa5.18□□□□□ -1.58
VPS33A-204ENST00000540669 H1FX-AS1Q4G0G2 97 aa5.17□□□□□ -1.58
VPS33A-204ENST00000540669 DMAC1Q96GE9 116 aa5.17□□□□□ -1.58
VPS33A-204ENST00000540669 A8MUN3 132 aa5.16□□□□□ -1.58
VPS33A-204ENST00000540669 SPANXA2-OT1Q8N9U9 137 aa5.16□□□□□ -1.58
VPS33A-204ENST00000540669 H7BZZ5 65 aa5.15□□□□□ -1.59
VPS33A-204ENST00000540669 CCDC179H3BU77 68 aa5.14□□□□□ -1.59
VPS33A-204ENST00000540669 NDUFC1O43677 76 aa5.12□□□□□ -1.59
VPS33A-204ENST00000540669 KRTAP10-6P60371 365 aaPredicted RBP5.08□□□□□ -1.6
VPS33A-204ENST00000540669 LCA10Q71F78 164 aa5.07□□□□□ -1.6
VPS33A-204ENST00000540669 S4R3F8 94 aa5.06□□□□□ -1.6
VPS33A-204ENST00000540669 KRTAP15-1Q3LI76 137 aa5.04□□□□□ -1.6
VPS33A-204ENST00000540669 KRTAP9-8Q9BYQ0 159 aa5.04□□□□□ -1.6
VPS33A-204ENST00000540669 ACYP2P14621 99 aa5□□□□□ -1.61
VPS33A-204ENST00000540669 MT2AP02795 61 aa4.99□□□□□ -1.61
VPS33A-204ENST00000540669 ATP5EP56381 51 aaPredicted RBP4.98□□□□□ -1.61
VPS33A-204ENST00000540669 TMEM258P61165 79 aa4.98□□□□□ -1.61
VPS33A-204ENST00000540669 CSAG1Q6PB30 78 aa4.96□□□□□ -1.62
VPS33A-204ENST00000540669 H0YAA0 97 aa4.95□□□□□ -1.62
VPS33A-204ENST00000540669 MT1FP04733 61 aa4.95□□□□□ -1.62
VPS33A-204ENST00000540669 COA5Q86WW8 74 aa4.94□□□□□ -1.62
VPS33A-204ENST00000540669 KRTAP5-3Q6L8H2 238 aa4.91□□□□□ -1.62
VPS33A-204ENST00000540669 KRTAP10-10P60014 251 aa4.9□□□□□ -1.63
VPS33A-204ENST00000540669 CHKB-CPT1BH3BT56 60 aa4.85□□□□□ -1.63
VPS33A-204ENST00000540669 SPTSSBQ8NFR3 76 aa4.84□□□□□ -1.63
VPS33A-204ENST00000540669 CRCT1Q9UGL9 99 aa4.84□□□□□ -1.63
VPS33A-204ENST00000540669 SERP1Q9Y6X1 66 aa4.81□□□□□ -1.64
VPS33A-204ENST00000540669 USH2AO75445 5202 aa4.8□□□□□ -1.64
VPS33A-204ENST00000540669 P0C880 135 aa4.79□□□□□ -1.64
VPS33A-204ENST00000540669 SPRR2GQ9BYE4 73 aa4.79□□□□□ -1.64
VPS33A-204ENST00000540669 FSIP2Q5CZC0 6907 aa4.78□□□□□ -1.64
VPS33A-204ENST00000540669 ADM2Q7Z4H4 148 aa4.78□□□□□ -1.64
VPS33A-204ENST00000540669 CRIPTQ9P021 101 aa4.77□□□□□ -1.65
VPS33A-204ENST00000540669 RPS28P62857 69 aaKnown RBP4.72□□□□□ -1.65
VPS33A-204ENST00000540669 KRTAP19-8Q3LI54 63 aa4.72□□□□□ -1.65
VPS33A-204ENST00000540669 SSPOA2VEC9 5147 aa4.7□□□□□ -1.66
VPS33A-204ENST00000540669 LINC01558Q9Y6Z2 57 aa4.7□□□□□ -1.66
VPS33A-204ENST00000540669 MT1BP07438 61 aa4.67□□□□□ -1.66
VPS33A-204ENST00000540669 KRTAP13-4Q3LI77 160 aa4.65□□□□□ -1.67
VPS33A-204ENST00000540669 Q1T7F1 81 aa4.64□□□□□ -1.67
VPS33A-204ENST00000540669 SMIM26A0A096LP01 95 aa4.63□□□□□ -1.67
VPS33A-204ENST00000540669 M0QZ58 72 aa4.63□□□□□ -1.67
VPS33A-204ENST00000540669 Q5VV11 94 aa4.63□□□□□ -1.67
VPS33A-204ENST00000540669 A0A1B0GU69 56 aa4.62□□□□□ -1.67
VPS33A-204ENST00000540669 R4GN34 69 aa4.62□□□□□ -1.67
VPS33A-204ENST00000540669 SEC61GP60059 68 aa4.6□□□□□ -1.67
VPS33A-204ENST00000540669 V9GYY9 64 aa4.58□□□□□ -1.68
VPS33A-204ENST00000540669 A0A1B0GU33 70 aa4.57□□□□□ -1.68
VPS33A-204ENST00000540669 A6NN06 94 aa4.57□□□□□ -1.68
VPS33A-204ENST00000540669 KRTAP19-6Q3LI70 58 aa4.56□□□□□ -1.68
VPS33A-204ENST00000540669 PRR15LQ9BU68 103 aa4.56□□□□□ -1.68
VPS33A-204ENST00000540669 FCGBPQ9Y6R7 5405 aaPredicted RBP4.51□□□□□ -1.69
VPS33A-204ENST00000540669 SPATA8Q6RVD6 105 aa4.5□□□□□ -1.69
VPS33A-204ENST00000540669 PSPHP1O15172 72 aa4.47□□□□□ -1.69
VPS33A-204ENST00000540669 PLAC4Q8WY50 150 aa4.47□□□□□ -1.69
VPS33A-204ENST00000540669 UQCR11O14957 56 aa4.46□□□□□ -1.7
VPS33A-204ENST00000540669 KRTAP10-5P60370 271 aa4.46□□□□□ -1.7
VPS33A-204ENST00000540669 KRTAP12-1P59990 96 aa4.45□□□□□ -1.7
VPS33A-204ENST00000540669 MT1XP80297 61 aa4.45□□□□□ -1.7
VPS33A-204ENST00000540669 LINC01554Q52M75 96 aa4.45□□□□□ -1.7
VPS33A-204ENST00000540669 A8MU10 97 aa4.43□□□□□ -1.7
VPS33A-204ENST00000540669 PRO2289Q9P1D8 64 aa4.43□□□□□ -1.7
VPS33A-204ENST00000540669 KRTAP12-2P59991 146 aa4.4□□□□□ -1.71
VPS33A-204ENST00000540669 A0A0D9SG42 100 aa4.39□□□□□ -1.71
VPS33A-204ENST00000540669 MIR22HGQ0VDD5 57 aa4.38□□□□□ -1.71
VPS33A-204ENST00000540669 MACF1Q9UPN3 7388 aaKnown RBP4.35□□□□□ -1.71
VPS33A-204ENST00000540669 A6NED7 52 aa4.33□□□□□ -1.72
VPS33A-204ENST00000540669 PRAC1Q96KF2 57 aa4.31□□□□□ -1.72
VPS33A-204ENST00000540669 CDC42SE1Q9NRR8 79 aa4.3□□□□□ -1.72
VPS33A-204ENST00000540669 LCE1AQ5T7P2 110 aa4.29□□□□□ -1.72
VPS33A-204ENST00000540669 SPINT4Q6UDR6 99 aa4.29□□□□□ -1.72
VPS33A-204ENST00000540669 SYNE2Q8WXH0 6885 aaKnown RBP4.28□□□□□ -1.72
VPS33A-204ENST00000540669 CAMK2N1Q7Z7J9 78 aa4.26□□□□□ -1.73
VPS33A-204ENST00000540669 KRTAP6-3Q3LI67 103 aa4.25□□□□□ -1.73
VPS33A-204ENST00000540669 KRTAP10-12P60413 245 aa4.24□□□□□ -1.73
VPS33A-204ENST00000540669 KRTAP10-7P60409 375 aaPredicted RBP4.21□□□□□ -1.74
VPS33A-204ENST00000540669 C10orf95Q9H7T3 257 aa4.21□□□□□ -1.74
VPS33A-204ENST00000540669 KMT2DO14686 5537 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms