RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 H1FX-AS1Q4G0G2 97 aa5.25□□□□□ -1.57
CTNNA1-243ENST00000540387 Q8N1X5 172 aa5.25□□□□□ -1.57
CTNNA1-243ENST00000540387 EPPK1P58107 5090 aaKnown RBP5.25□□□□□ -1.57
CTNNA1-243ENST00000540387 K7ERS5 55 aa5.24□□□□□ -1.57
CTNNA1-243ENST00000540387 VPS13BQ7Z7G8 4022 aa5.24□□□□□ -1.57
CTNNA1-243ENST00000540387 FAT1Q14517 4588 aa5.24□□□□□ -1.57
CTNNA1-243ENST00000540387 SEC61BP60468 96 aaKnown RBP5.22□□□□□ -1.57
CTNNA1-243ENST00000540387 TPRXLQ17RH7 258 aa5.22□□□□□ -1.57
CTNNA1-243ENST00000540387 HSPG2P98160 4391 aa5.18□□□□□ -1.58
CTNNA1-243ENST00000540387 KIAA1109Q2LD37 5005 aa5.18□□□□□ -1.58
CTNNA1-243ENST00000540387 KRTAP17-1Q9BYP8 105 aa5.16□□□□□ -1.58
CTNNA1-243ENST00000540387 RYR1P21817 5038 aa5.16□□□□□ -1.58
CTNNA1-243ENST00000540387 KRTAP10-4P60372 401 aaPredicted RBP5.16□□□□□ -1.58
CTNNA1-243ENST00000540387 LUZP6Q538Z0 58 aa5.16□□□□□ -1.58
CTNNA1-243ENST00000540387 C10orf95Q9H7T3 257 aa5.13□□□□□ -1.59
CTNNA1-243ENST00000540387 Q5VSD8 79 aa5.12□□□□□ -1.59
CTNNA1-243ENST00000540387 COX6B2Q6YFQ2 88 aa5.12□□□□□ -1.59
CTNNA1-243ENST00000540387 KRTAP1-4P0C5Y4 121 aa5.1□□□□□ -1.59
CTNNA1-243ENST00000540387 RPL37P61927 97 aaKnown RBP5.07□□□□□ -1.6
CTNNA1-243ENST00000540387 BIRC6Q9NR09 4857 aa5.05□□□□□ -1.6
CTNNA1-243ENST00000540387 KRTAP13-2Q52LG2 175 aa5.05□□□□□ -1.6
CTNNA1-243ENST00000540387 KRTAP4-5Q9BYR2 181 aa5.05□□□□□ -1.6
CTNNA1-243ENST00000540387 KRTAP3-1Q9BYR8 98 aa5.05□□□□□ -1.6
CTNNA1-243ENST00000540387 LRP1Q07954 4544 aaKnown RBP5.03□□□□□ -1.6
CTNNA1-243ENST00000540387 MYCBP2O75592 4640 aa5□□□□□ -1.61
CTNNA1-243ENST00000540387 A0A0D9SG42 100 aa5□□□□□ -1.61
CTNNA1-243ENST00000540387 PKHD1L1Q86WI1 4243 aa4.99□□□□□ -1.61
CTNNA1-243ENST00000540387 DMBT1Q9UGM3 2413 aaPredicted RBP4.99□□□□□ -1.61
CTNNA1-243ENST00000540387 XP32Q5T750 250 aa4.98□□□□□ -1.61
CTNNA1-243ENST00000540387 LOC100996750A0A140TA64 210 aa4.98□□□□□ -1.61
CTNNA1-243ENST00000540387 KRTAP4-6Q9BYQ5 205 aa4.98□□□□□ -1.61
CTNNA1-243ENST00000540387 HERC2O95714 4834 aa4.97□□□□□ -1.61
CTNNA1-243ENST00000540387 KRTAP13-4Q3LI77 160 aa4.97□□□□□ -1.61
CTNNA1-243ENST00000540387 FAT3Q8TDW7 4589 aa4.96□□□□□ -1.62
CTNNA1-243ENST00000540387 KRTAP10-8P60410 259 aa4.95□□□□□ -1.62
CTNNA1-243ENST00000540387 TNXBP22105 4242 aa4.94□□□□□ -1.62
CTNNA1-243ENST00000540387 ABCA13Q86UQ4 5058 aa4.93□□□□□ -1.62
CTNNA1-243ENST00000540387 KRTAP10-6P60371 365 aaPredicted RBP4.93□□□□□ -1.62
CTNNA1-243ENST00000540387 MT1HL1P0DM35 61 aa4.91□□□□□ -1.62
CTNNA1-243ENST00000540387 S4R3F8 94 aa4.9□□□□□ -1.63
CTNNA1-243ENST00000540387 KRTAP12-2P59991 146 aa4.86□□□□□ -1.63
CTNNA1-243ENST00000540387 RPS29P62273 56 aaKnown RBP4.86□□□□□ -1.63
CTNNA1-243ENST00000540387 PCLOQ9Y6V0 5065 aa4.81□□□□□ -1.64
CTNNA1-243ENST00000540387 C9orf92A6NGG3 77 aa4.79□□□□□ -1.64
CTNNA1-243ENST00000540387 KRTAP12-1P59990 96 aa4.78□□□□□ -1.64
CTNNA1-243ENST00000540387 PLAC4Q8WY50 150 aa4.76□□□□□ -1.65
CTNNA1-243ENST00000540387 HERC1Q15751 4861 aa4.71□□□□□ -1.65
CTNNA1-243ENST00000540387 LPAP08519 4548 aa4.68□□□□□ -1.66
CTNNA1-243ENST00000540387 CAMK2N1Q7Z7J9 78 aa4.67□□□□□ -1.66
CTNNA1-243ENST00000540387 KRTAP4-8Q9BYQ9 185 aa4.66□□□□□ -1.66
CTNNA1-243ENST00000540387 LRP2P98164 4655 aa4.63□□□□□ -1.67
CTNNA1-243ENST00000540387 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.63□□□□□ -1.67
CTNNA1-243ENST00000540387 KRTAP9-2Q9BYQ4 174 aa4.62□□□□□ -1.67
CTNNA1-243ENST00000540387 KRTAP9-6A0A140TA67 174 aa4.59□□□□□ -1.67
CTNNA1-243ENST00000540387 HMCN2Q8NDA2 5059 aa4.58□□□□□ -1.68
CTNNA1-243ENST00000540387 KRTAP19-1Q8IUB9 90 aa4.58□□□□□ -1.68
CTNNA1-243ENST00000540387 M0QZ58 72 aa4.56□□□□□ -1.68
CTNNA1-243ENST00000540387 KRTAP4-12Q9BQ66 201 aa4.55□□□□□ -1.68
CTNNA1-243ENST00000540387 LCE3BQ5TA77 95 aa4.5□□□□□ -1.69
CTNNA1-243ENST00000540387 MUC2Q02817 5179 aa4.45□□□□□ -1.7
CTNNA1-243ENST00000540387 KRTAP4-1Q9BYQ7 146 aa4.44□□□□□ -1.7
CTNNA1-243ENST00000540387 UBR4Q5T4S7 5183 aa4.44□□□□□ -1.7
CTNNA1-243ENST00000540387 MUC17Q685J3 4493 aa4.43□□□□□ -1.7
CTNNA1-243ENST00000540387 PRO2289Q9P1D8 64 aa4.42□□□□□ -1.7
CTNNA1-243ENST00000540387 PP632Q6XCG6 107 aa4.41□□□□□ -1.7
CTNNA1-243ENST00000540387 LCE4AQ5TA78 99 aa4.41□□□□□ -1.7
CTNNA1-243ENST00000540387 KRTAP9-9Q9BYP9 154 aa4.39□□□□□ -1.71
CTNNA1-243ENST00000540387 KRTAP9-4Q9BYQ2 154 aa4.39□□□□□ -1.71
CTNNA1-243ENST00000540387 RNF213Q63HN8 5207 aa4.37□□□□□ -1.71
CTNNA1-243ENST00000540387 R4GN34 69 aa4.35□□□□□ -1.71
CTNNA1-243ENST00000540387 SPRR5A0A1B0GTR4 108 aa4.34□□□□□ -1.71
CTNNA1-243ENST00000540387 KRTAP19-2Q3LHN2 52 aa4.29□□□□□ -1.72
CTNNA1-243ENST00000540387 KRTAP23-1A1A580 65 aa4.28□□□□□ -1.72
CTNNA1-243ENST00000540387 KRTAP9-7A8MTY7 169 aa4.27□□□□□ -1.73
CTNNA1-243ENST00000540387 FAT4Q6V0I7 4981 aa4.25□□□□□ -1.73
CTNNA1-243ENST00000540387 KRTAP19-4Q3LI73 84 aa4.25□□□□□ -1.73
CTNNA1-243ENST00000540387 KRTAP4-8A0A0G2JLE6 195 aa4.24□□□□□ -1.73
CTNNA1-243ENST00000540387 INE1O15225 51 aa4.23□□□□□ -1.73
CTNNA1-243ENST00000540387 FLGP20930 4061 aaPredicted RBP4.2□□□□□ -1.74
CTNNA1-243ENST00000540387 LCE1DQ5T752 114 aa4.17□□□□□ -1.74
CTNNA1-243ENST00000540387 MT1HP80294 61 aa4.15□□□□□ -1.75
CTNNA1-243ENST00000540387 M0R2T5 61 aa4.11□□□□□ -1.75
CTNNA1-243ENST00000540387 TNP1P09430 55 aa4.1□□□□□ -1.75
CTNNA1-243ENST00000540387 KRTAP4-7Q9BYR0 210 aa4.07□□□□□ -1.76
CTNNA1-243ENST00000540387 KRTAP9-3Q9BYQ3 159 aa4.06□□□□□ -1.76
CTNNA1-243ENST00000540387 KRTAP4-9Q9BYQ8 210 aa4□□□□□ -1.77
CTNNA1-243ENST00000540387 LCE5AQ5TCM9 118 aa3.99□□□□□ -1.77
CTNNA1-243ENST00000540387 KRTAP9-8Q9BYQ0 159 aa3.99□□□□□ -1.77
CTNNA1-243ENST00000540387 MT2AP02795 61 aa3.96□□□□□ -1.78
CTNNA1-243ENST00000540387 MT1FP04733 61 aa3.94□□□□□ -1.78
CTNNA1-243ENST00000540387 KRTAP10-10P60014 251 aa3.93□□□□□ -1.78
CTNNA1-243ENST00000540387 KRTAP4-11Q9BYQ6 195 aa3.92□□□□□ -1.78
CTNNA1-243ENST00000540387 KRTAP4-2Q9BYR5 136 aa3.92□□□□□ -1.78
CTNNA1-243ENST00000540387 LCE3AQ5TA76 89 aa3.84□□□□□ -1.79
CTNNA1-243ENST00000540387 SPRR2GQ9BYE4 73 aa3.81□□□□□ -1.8
CTNNA1-243ENST00000540387 KRTAP19-8Q3LI54 63 aa3.73□□□□□ -1.81
CTNNA1-243ENST00000540387 KRTAP8-1Q8IUC2 63 aa3.72□□□□□ -1.81
CTNNA1-243ENST00000540387 MT1BP07438 61 aa3.71□□□□□ -1.82
CTNNA1-243ENST00000540387 USH2AO75445 5202 aa3.71□□□□□ -1.82
CTNNA1-243ENST00000540387 KRTAP10-12P60413 245 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms