RNA–Protein interactions for RNA: ENST00000538862.6

CDCA3-207, Transcript of cell division cycle associated 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDCA3, Length 1,943 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-207ENST00000538862 ADM2Q7Z4H4 148 aa8.05□□□□□ -1.12
CDCA3-207ENST00000538862 TNXBP22105 4242 aa8.03□□□□□ -1.12
CDCA3-207ENST00000538862 MT1HL1P0DM35 61 aa8.02□□□□□ -1.13
CDCA3-207ENST00000538862 HMCN2Q8NDA2 5059 aa7.96□□□□□ -1.14
CDCA3-207ENST00000538862 SPATA8Q6RVD6 105 aa7.95□□□□□ -1.14
CDCA3-207ENST00000538862 A8MUU9 505 aa7.92□□□□□ -1.14
CDCA3-207ENST00000538862 UQCR11O14957 56 aa7.92□□□□□ -1.14
CDCA3-207ENST00000538862 CSAG1Q6PB30 78 aa7.92□□□□□ -1.14
CDCA3-207ENST00000538862 C20orf166-AS1Q96NR2 134 aa7.92□□□□□ -1.14
CDCA3-207ENST00000538862 KRTAP10-8P60410 259 aa7.9□□□□□ -1.14
CDCA3-207ENST00000538862 A0A0A0MQY5 61 aa7.9□□□□□ -1.15
CDCA3-207ENST00000538862 MIR22HGQ0VDD5 57 aa7.89□□□□□ -1.15
CDCA3-207ENST00000538862 ROMO1P60602 79 aa7.88□□□□□ -1.15
CDCA3-207ENST00000538862 C9orf92A6NGG3 77 aa7.86□□□□□ -1.15
CDCA3-207ENST00000538862 UBR4Q5T4S7 5183 aa7.82□□□□□ -1.16
CDCA3-207ENST00000538862 KRTAP3-1Q9BYR8 98 aa7.76□□□□□ -1.17
CDCA3-207ENST00000538862 LRP2P98164 4655 aa7.75□□□□□ -1.17
CDCA3-207ENST00000538862 KRTAP25-1Q3LHN0 102 aa7.71□□□□□ -1.18
CDCA3-207ENST00000538862 LPAP08519 4548 aa7.68□□□□□ -1.18
CDCA3-207ENST00000538862 COX6B2Q6YFQ2 88 aa7.67□□□□□ -1.18
CDCA3-207ENST00000538862 RNF213Q63HN8 5207 aa7.64□□□□□ -1.19
CDCA3-207ENST00000538862 A0A1B0GU33 70 aa7.62□□□□□ -1.19
CDCA3-207ENST00000538862 H0YAA0 97 aa7.62□□□□□ -1.19
CDCA3-207ENST00000538862 H1FX-AS1Q4G0G2 97 aa7.6□□□□□ -1.19
CDCA3-207ENST00000538862 P0C880 135 aa7.58□□□□□ -1.2
CDCA3-207ENST00000538862 RPL37P61927 97 aaKnown RBP7.54□□□□□ -1.2
CDCA3-207ENST00000538862 XP32Q5T750 250 aa7.48□□□□□ -1.21
CDCA3-207ENST00000538862 KRTAP3-3Q9BYR6 98 aa7.44□□□□□ -1.22
CDCA3-207ENST00000538862 MUC2Q02817 5179 aa7.42□□□□□ -1.22
CDCA3-207ENST00000538862 K7ERS5 55 aa7.4□□□□□ -1.23
CDCA3-207ENST00000538862 KRTAP10-6P60371 365 aaPredicted RBP7.39□□□□□ -1.23
CDCA3-207ENST00000538862 S4R3F8 94 aa7.39□□□□□ -1.23
CDCA3-207ENST00000538862 TPRXLQ17RH7 258 aa7.37□□□□□ -1.23
CDCA3-207ENST00000538862 KRTAP3-2Q9BYR7 98 aa7.33□□□□□ -1.24
CDCA3-207ENST00000538862 MUC17Q685J3 4493 aa7.31□□□□□ -1.24
CDCA3-207ENST00000538862 NDUFAF8A1L188 74 aa7.3□□□□□ -1.24
CDCA3-207ENST00000538862 KRTAP13-4Q3LI77 160 aa7.27□□□□□ -1.25
CDCA3-207ENST00000538862 SPINT4Q6UDR6 99 aa7.25□□□□□ -1.25
CDCA3-207ENST00000538862 KRTAP15-1Q3LI76 137 aa7.23□□□□□ -1.25
CDCA3-207ENST00000538862 SEC61BP60468 96 aaKnown RBP7.21□□□□□ -1.26
CDCA3-207ENST00000538862 LUZP6Q538Z0 58 aa7.21□□□□□ -1.26
CDCA3-207ENST00000538862 A0A0D9SG42 100 aa7.19□□□□□ -1.26
CDCA3-207ENST00000538862 FAT4Q6V0I7 4981 aa7.18□□□□□ -1.26
CDCA3-207ENST00000538862 KRTAP4-1Q9BYQ7 146 aa7.15□□□□□ -1.27
CDCA3-207ENST00000538862 CRIPTQ9P021 101 aa7.09□□□□□ -1.27
CDCA3-207ENST00000538862 M0QZ58 72 aa7.07□□□□□ -1.28
CDCA3-207ENST00000538862 KRTAP12-2P59991 146 aa7.04□□□□□ -1.28
CDCA3-207ENST00000538862 LCE2AQ5TA79 106 aaPredicted RBP7.03□□□□□ -1.28
CDCA3-207ENST00000538862 KRTAP12-1P59990 96 aa7.02□□□□□ -1.29
CDCA3-207ENST00000538862 KRTAP19-2Q3LHN2 52 aa6.91□□□□□ -1.3
CDCA3-207ENST00000538862 LCE2CQ5TA81 110 aa6.91□□□□□ -1.3
CDCA3-207ENST00000538862 C10orf95Q9H7T3 257 aa6.88□□□□□ -1.31
CDCA3-207ENST00000538862 R4GN34 69 aa6.84□□□□□ -1.31
CDCA3-207ENST00000538862 MT1HP80294 61 aa6.82□□□□□ -1.32
CDCA3-207ENST00000538862 KRTAP9-2Q9BYQ4 174 aa6.78□□□□□ -1.32
CDCA3-207ENST00000538862 FLGP20930 4061 aaPredicted RBP6.78□□□□□ -1.32
CDCA3-207ENST00000538862 LORP23490 312 aaPredicted RBP6.71□□□□□ -1.34
CDCA3-207ENST00000538862 M0R2T5 61 aa6.7□□□□□ -1.34
CDCA3-207ENST00000538862 CAMK2N1Q7Z7J9 78 aa6.68□□□□□ -1.34
CDCA3-207ENST00000538862 LCE2DQ5TA82 110 aaPredicted RBP6.58□□□□□ -1.36
CDCA3-207ENST00000538862 FSIP2Q5CZC0 6907 aa6.55□□□□□ -1.36
CDCA3-207ENST00000538862 KRTAP9-6A0A140TA67 174 aa6.51□□□□□ -1.37
CDCA3-207ENST00000538862 PLAC4Q8WY50 150 aa6.47□□□□□ -1.37
CDCA3-207ENST00000538862 KRTAP9-8Q9BYQ0 159 aa6.46□□□□□ -1.38
CDCA3-207ENST00000538862 PP632Q6XCG6 107 aa6.44□□□□□ -1.38
CDCA3-207ENST00000538862 CRCT1Q9UGL9 99 aa6.41□□□□□ -1.38
CDCA3-207ENST00000538862 MT2AP02795 61 aa6.38□□□□□ -1.39
CDCA3-207ENST00000538862 MT1FP04733 61 aa6.35□□□□□ -1.39
CDCA3-207ENST00000538862 USH2AO75445 5202 aa6.34□□□□□ -1.39
CDCA3-207ENST00000538862 PRO2289Q9P1D8 64 aa6.34□□□□□ -1.39
CDCA3-207ENST00000538862 KRTAP10-10P60014 251 aa6.31□□□□□ -1.4
CDCA3-207ENST00000538862 KRTAP23-1A1A580 65 aa6.28□□□□□ -1.4
CDCA3-207ENST00000538862 TNP1P09430 55 aa6.28□□□□□ -1.4
CDCA3-207ENST00000538862 SSPOA2VEC9 5147 aa6.26□□□□□ -1.41
CDCA3-207ENST00000538862 KRTAP9-3Q9BYQ3 159 aa6.25□□□□□ -1.41
CDCA3-207ENST00000538862 SPRR2GQ9BYE4 73 aa6.24□□□□□ -1.41
CDCA3-207ENST00000538862 LCE2BO14633 110 aa6.23□□□□□ -1.41
CDCA3-207ENST00000538862 KRTAP19-1Q8IUB9 90 aa6.17□□□□□ -1.42
CDCA3-207ENST00000538862 FCGBPQ9Y6R7 5405 aaPredicted RBP6.09□□□□□ -1.43
CDCA3-207ENST00000538862 INE1O15225 51 aa6.08□□□□□ -1.44
CDCA3-207ENST00000538862 SPRR5A0A1B0GTR4 108 aa5.98□□□□□ -1.45
CDCA3-207ENST00000538862 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.97□□□□□ -1.45
CDCA3-207ENST00000538862 KRTAP19-8Q3LI54 63 aa5.97□□□□□ -1.45
CDCA3-207ENST00000538862 KRTAP19-6Q3LI70 58 aa5.95□□□□□ -1.46
CDCA3-207ENST00000538862 LCE3AQ5TA76 89 aa5.9□□□□□ -1.46
CDCA3-207ENST00000538862 KRTAP9-7A8MTY7 169 aa5.87□□□□□ -1.47
CDCA3-207ENST00000538862 MT1BP07438 61 aa5.85□□□□□ -1.47
CDCA3-207ENST00000538862 MACF1Q9UPN3 7388 aaKnown RBP5.84□□□□□ -1.47
CDCA3-207ENST00000538862 KRTAP10-5P60370 271 aa5.82□□□□□ -1.48
CDCA3-207ENST00000538862 KRTAP8-1Q8IUC2 63 aa5.82□□□□□ -1.48
CDCA3-207ENST00000538862 SYNE2Q8WXH0 6885 aaKnown RBP5.81□□□□□ -1.48
CDCA3-207ENST00000538862 MT1XP80297 61 aa5.8□□□□□ -1.48
CDCA3-207ENST00000538862 KRTAP10-12P60413 245 aa5.7□□□□□ -1.5
CDCA3-207ENST00000538862 KRTAP12-3P60328 96 aa5.64□□□□□ -1.51
CDCA3-207ENST00000538862 KRTAP10-7P60409 375 aaPredicted RBP5.62□□□□□ -1.51
CDCA3-207ENST00000538862 KRTAP6-3Q3LI67 103 aa5.58□□□□□ -1.52
CDCA3-207ENST00000538862 MUC12Q9UKN1 5478 aa5.5□□□□□ -1.53
CDCA3-207ENST00000538862 KMT2DO14686 5537 aa5.49□□□□□ -1.53
CDCA3-207ENST00000538862 NEBP20929 6669 aa5.39□□□□□ -1.55
CDCA3-207ENST00000538862 KRTAP19-5Q3LI72 72 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms