RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 H3BS24 57 aa7.35□□□□□ -1.23
LIMK1-208ENST00000538333 XP32Q5T750 250 aa7.35□□□□□ -1.23
LIMK1-208ENST00000538333 KTN1-AS1Q86SY8 53 aa7.35□□□□□ -1.23
LIMK1-208ENST00000538333 COX6B2Q6YFQ2 88 aa7.33□□□□□ -1.24
LIMK1-208ENST00000538333 SPATA8Q6RVD6 105 aa7.3□□□□□ -1.24
LIMK1-208ENST00000538333 A6NN06 94 aa7.3□□□□□ -1.24
LIMK1-208ENST00000538333 UQCR11O14957 56 aa7.29□□□□□ -1.24
LIMK1-208ENST00000538333 PCLOQ9Y6V0 5065 aa7.29□□□□□ -1.24
LIMK1-208ENST00000538333 MIR22HGQ0VDD5 57 aa7.25□□□□□ -1.25
LIMK1-208ENST00000538333 TPRXLQ17RH7 258 aa7.17□□□□□ -1.26
LIMK1-208ENST00000538333 KRTAP3-3Q9BYR6 98 aa7.15□□□□□ -1.27
LIMK1-208ENST00000538333 LRP2P98164 4655 aa7.12□□□□□ -1.27
LIMK1-208ENST00000538333 LPAP08519 4548 aa7.12□□□□□ -1.27
LIMK1-208ENST00000538333 H0YAA0 97 aa7.12□□□□□ -1.27
LIMK1-208ENST00000538333 A0A1B0GU33 70 aa7.1□□□□□ -1.27
LIMK1-208ENST00000538333 H1FX-AS1Q4G0G2 97 aa7.1□□□□□ -1.27
LIMK1-208ENST00000538333 S4R3F8 94 aa7.07□□□□□ -1.28
LIMK1-208ENST00000538333 HERC1Q15751 4861 aa7.07□□□□□ -1.28
LIMK1-208ENST00000538333 J3QL48 77 aa7.05□□□□□ -1.28
LIMK1-208ENST00000538333 KRTAP10-6P60371 365 aaPredicted RBP7.02□□□□□ -1.29
LIMK1-208ENST00000538333 KRTAP3-2Q9BYR7 98 aa6.99□□□□□ -1.29
LIMK1-208ENST00000538333 ADM2Q7Z4H4 148 aa6.93□□□□□ -1.3
LIMK1-208ENST00000538333 LINC01554Q52M75 96 aa6.92□□□□□ -1.3
LIMK1-208ENST00000538333 PRAC1Q96KF2 57 aa6.91□□□□□ -1.3
LIMK1-208ENST00000538333 KRTAP13-4Q3LI77 160 aa6.9□□□□□ -1.3
LIMK1-208ENST00000538333 P0C880 135 aa6.89□□□□□ -1.31
LIMK1-208ENST00000538333 SEC61BP60468 96 aaKnown RBP6.87□□□□□ -1.31
LIMK1-208ENST00000538333 MUC17Q685J3 4493 aa6.87□□□□□ -1.31
LIMK1-208ENST00000538333 HMCN2Q8NDA2 5059 aa6.87□□□□□ -1.31
LIMK1-208ENST00000538333 CSAG1Q6PB30 78 aa6.85□□□□□ -1.31
LIMK1-208ENST00000538333 KRTAP4-1Q9BYQ7 146 aa6.81□□□□□ -1.32
LIMK1-208ENST00000538333 K7ERS5 55 aa6.78□□□□□ -1.32
LIMK1-208ENST00000538333 A0A0D9SG42 100 aa6.76□□□□□ -1.33
LIMK1-208ENST00000538333 KRTAP19-2Q3LHN2 52 aa6.71□□□□□ -1.33
LIMK1-208ENST00000538333 M0QZ58 72 aa6.67□□□□□ -1.34
LIMK1-208ENST00000538333 UBR4Q5T4S7 5183 aa6.65□□□□□ -1.34
LIMK1-208ENST00000538333 KRTAP12-2P59991 146 aa6.64□□□□□ -1.35
LIMK1-208ENST00000538333 A0A0A0MQY5 61 aa6.63□□□□□ -1.35
LIMK1-208ENST00000538333 KRTAP12-1P59990 96 aa6.63□□□□□ -1.35
LIMK1-208ENST00000538333 ROMO1P60602 79 aa6.63□□□□□ -1.35
LIMK1-208ENST00000538333 KRTAP25-1Q3LHN0 102 aa6.61□□□□□ -1.35
LIMK1-208ENST00000538333 MUC2Q02817 5179 aa6.57□□□□□ -1.36
LIMK1-208ENST00000538333 SPINT4Q6UDR6 99 aa6.55□□□□□ -1.36
LIMK1-208ENST00000538333 LORP23490 312 aaPredicted RBP6.54□□□□□ -1.36
LIMK1-208ENST00000538333 CRIPTQ9P021 101 aa6.53□□□□□ -1.36
LIMK1-208ENST00000538333 R4GN34 69 aa6.53□□□□□ -1.36
LIMK1-208ENST00000538333 RNF213Q63HN8 5207 aa6.53□□□□□ -1.36
LIMK1-208ENST00000538333 FLGP20930 4061 aaPredicted RBP6.52□□□□□ -1.37
LIMK1-208ENST00000538333 LCE2CQ5TA81 110 aa6.37□□□□□ -1.39
LIMK1-208ENST00000538333 C10orf95Q9H7T3 257 aa6.37□□□□□ -1.39
LIMK1-208ENST00000538333 FAT4Q6V0I7 4981 aa6.29□□□□□ -1.4
LIMK1-208ENST00000538333 MT1HP80294 61 aa6.19□□□□□ -1.42
LIMK1-208ENST00000538333 CAMK2N1Q7Z7J9 78 aa6.15□□□□□ -1.43
LIMK1-208ENST00000538333 M0R2T5 61 aa6.11□□□□□ -1.43
LIMK1-208ENST00000538333 SPRR2GQ9BYE4 73 aa6.11□□□□□ -1.43
LIMK1-208ENST00000538333 KRTAP19-1Q8IUB9 90 aa6.09□□□□□ -1.43
LIMK1-208ENST00000538333 MT2AP02795 61 aa6.04□□□□□ -1.44
LIMK1-208ENST00000538333 MT1FP04733 61 aa6.04□□□□□ -1.44
LIMK1-208ENST00000538333 KRTAP9-8Q9BYQ0 159 aa6.04□□□□□ -1.44
LIMK1-208ENST00000538333 NDUFAF8A1L188 74 aa6.03□□□□□ -1.44
LIMK1-208ENST00000538333 KRTAP15-1Q3LI76 137 aa5.99□□□□□ -1.45
LIMK1-208ENST00000538333 KRTAP10-10P60014 251 aa5.98□□□□□ -1.45
LIMK1-208ENST00000538333 PP632Q6XCG6 107 aa5.96□□□□□ -1.46
LIMK1-208ENST00000538333 LCE2AQ5TA79 106 aaPredicted RBP5.94□□□□□ -1.46
LIMK1-208ENST00000538333 PLAC4Q8WY50 150 aa5.94□□□□□ -1.46
LIMK1-208ENST00000538333 LUZP6Q538Z0 58 aa5.93□□□□□ -1.46
LIMK1-208ENST00000538333 TNP1P09430 55 aa5.92□□□□□ -1.46
LIMK1-208ENST00000538333 KRTAP19-8Q3LI54 63 aa5.89□□□□□ -1.47
LIMK1-208ENST00000538333 KRTAP23-1A1A580 65 aa5.86□□□□□ -1.47
LIMK1-208ENST00000538333 MT1BP07438 61 aa5.81□□□□□ -1.48
LIMK1-208ENST00000538333 KRTAP9-3Q9BYQ3 159 aa5.8□□□□□ -1.48
LIMK1-208ENST00000538333 MT1XP80297 61 aa5.72□□□□□ -1.49
LIMK1-208ENST00000538333 KRTAP10-5P60370 271 aa5.71□□□□□ -1.5
LIMK1-208ENST00000538333 LCE3AQ5TA76 89 aa5.66□□□□□ -1.5
LIMK1-208ENST00000538333 LCE2BO14633 110 aa5.59□□□□□ -1.52
LIMK1-208ENST00000538333 FSIP2Q5CZC0 6907 aa5.55□□□□□ -1.52
LIMK1-208ENST00000538333 KRTAP8-1Q8IUC2 63 aa5.55□□□□□ -1.52
LIMK1-208ENST00000538333 SPRR5A0A1B0GTR4 108 aa5.52□□□□□ -1.53
LIMK1-208ENST00000538333 KRTAP10-7P60409 375 aaPredicted RBP5.52□□□□□ -1.53
LIMK1-208ENST00000538333 KRTAP10-12P60413 245 aa5.51□□□□□ -1.53
LIMK1-208ENST00000538333 PRO2289Q9P1D8 64 aa5.5□□□□□ -1.53
LIMK1-208ENST00000538333 USH2AO75445 5202 aa5.5□□□□□ -1.53
LIMK1-208ENST00000538333 LCE2DQ5TA82 110 aaPredicted RBP5.45□□□□□ -1.54
LIMK1-208ENST00000538333 KRTAP9-2Q9BYQ4 174 aa5.45□□□□□ -1.54
LIMK1-208ENST00000538333 KRTAP12-3P60328 96 aa5.4□□□□□ -1.55
LIMK1-208ENST00000538333 SSPOA2VEC9 5147 aa5.37□□□□□ -1.55
LIMK1-208ENST00000538333 KMT2DO14686 5537 aa5.24□□□□□ -1.57
LIMK1-208ENST00000538333 KRTAP19-5Q3LI72 72 aa5.24□□□□□ -1.57
LIMK1-208ENST00000538333 KRTAP4-8A0A0G2JLE6 195 aa5.21□□□□□ -1.58
LIMK1-208ENST00000538333 KRTAP4-8Q9BYQ9 185 aa5.21□□□□□ -1.58
LIMK1-208ENST00000538333 CRCT1Q9UGL9 99 aa5.2□□□□□ -1.58
LIMK1-208ENST00000538333 FCGBPQ9Y6R7 5405 aaPredicted RBP5.17□□□□□ -1.58
LIMK1-208ENST00000538333 KRTAP19-6Q3LI70 58 aa5.14□□□□□ -1.59
LIMK1-208ENST00000538333 KRTAP9-6A0A140TA67 174 aa5.11□□□□□ -1.59
LIMK1-208ENST00000538333 KRTAP19-7Q3SYF9 63 aa5.1□□□□□ -1.59
LIMK1-208ENST00000538333 LCE3CQ5T5A8 94 aa5.08□□□□□ -1.6
LIMK1-208ENST00000538333 MACF1Q9UPN3 7388 aaKnown RBP5.03□□□□□ -1.6
LIMK1-208ENST00000538333 MT1EP04732 61 aa4.96□□□□□ -1.62
LIMK1-208ENST00000538333 MT1LQ93083 61 aa4.92□□□□□ -1.62
LIMK1-208ENST00000538333 SYNE2Q8WXH0 6885 aaKnown RBP4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms