RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647		H0Y9P7	68 aa		5.89	□□□□□ -1.47
CTNND1-238	ENST00000534647	KLKP1	Q107X0	134 aa		5.89	□□□□□ -1.47
CTNND1-238	ENST00000534647	C20orf166-AS1	Q96NR2	134 aa		5.89	□□□□□ -1.47
CTNND1-238	ENST00000534647	SNURF	Q9Y675	71 aa		5.89	□□□□□ -1.47
CTNND1-238	ENST00000534647	TRAV22	A0A0B4J277	110 aa		5.88	□□□□□ -1.47
CTNND1-238	ENST00000534647		H3BPC8	53 aa		5.88	□□□□□ -1.47
CTNND1-238	ENST00000534647	NDUFC1	O43677	76 aa		5.88	□□□□□ -1.47
CTNND1-238	ENST00000534647		A8MUU9	505 aa		5.87	□□□□□ -1.47
CTNND1-238	ENST00000534647		Q8N9P0	234 aa	Predicted RBP	5.86	□□□□□ -1.47
CTNND1-238	ENST00000534647	LINC00208	Q96KT6	92 aa		5.85	□□□□□ -1.47
CTNND1-238	ENST00000534647	KRTAP16-1	A8MUX0	517 aa		5.84	□□□□□ -1.47
CTNND1-238	ENST00000534647	TMEM258	P61165	79 aa		5.83	□□□□□ -1.48
CTNND1-238	ENST00000534647	C1orf64	Q8NEQ6	169 aa		5.82	□□□□□ -1.48
CTNND1-238	ENST00000534647	CYSTM1	Q9H1C7	97 aa		5.82	□□□□□ -1.48
CTNND1-238	ENST00000534647	MT2A	P02795	61 aa		5.81	□□□□□ -1.48
CTNND1-238	ENST00000534647	ZCCHC13	Q8WW36	166 aa	Known RBP	5.81	□□□□□ -1.48
CTNND1-238	ENST00000534647		H7BZZ5	65 aa		5.8	□□□□□ -1.48
CTNND1-238	ENST00000534647	PMAIP1	Q13794	54 aa		5.8	□□□□□ -1.48
CTNND1-238	ENST00000534647	LCE5A	Q5TCM9	118 aa		5.8	□□□□□ -1.48
CTNND1-238	ENST00000534647	SSPO	A2VEC9	5147 aa		5.79	□□□□□ -1.48
CTNND1-238	ENST00000534647	LOC101927531	A0A1B0GV80	90 aa		5.79	□□□□□ -1.48
CTNND1-238	ENST00000534647	KRTAP9-9	Q9BYP9	154 aa		5.78	□□□□□ -1.48
CTNND1-238	ENST00000534647	USH2A	O75445	5202 aa		5.78	□□□□□ -1.48
CTNND1-238	ENST00000534647	FAM236D	A0A1B0GTK5	79 aa		5.77	□□□□□ -1.49
CTNND1-238	ENST00000534647	FAM236C	P0DP71	79 aa		5.77	□□□□□ -1.49
CTNND1-238	ENST00000534647	ATP5E	P56381	51 aa	Predicted RBP	5.77	□□□□□ -1.49
CTNND1-238	ENST00000534647	KRTAP19-1	Q8IUB9	90 aa		5.77	□□□□□ -1.49
CTNND1-238	ENST00000534647	KRTAP9-3	Q9BYQ3	159 aa		5.77	□□□□□ -1.49
CTNND1-238	ENST00000534647	MT1F	P04733	61 aa		5.76	□□□□□ -1.49
CTNND1-238	ENST00000534647	LCE4A	Q5TA78	99 aa		5.76	□□□□□ -1.49
CTNND1-238	ENST00000534647		Q5W150	140 aa		5.76	□□□□□ -1.49
CTNND1-238	ENST00000534647	HRES1	P13985	223 aa		5.72	□□□□□ -1.49
CTNND1-238	ENST00000534647	KRTAP10-10	P60014	251 aa		5.72	□□□□□ -1.49
CTNND1-238	ENST00000534647	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	5.72	□□□□□ -1.49
CTNND1-238	ENST00000534647	CYP4F30P	Q9H0H9	118 aa		5.7	□□□□□ -1.5
CTNND1-238	ENST00000534647	SPANXA2-OT1	Q8N9U9	137 aa		5.69	□□□□□ -1.5
CTNND1-238	ENST00000534647	C7orf65	Q6ZTY9	151 aa		5.67	□□□□□ -1.5
CTNND1-238	ENST00000534647	SERP1	Q9Y6X1	66 aa		5.66	□□□□□ -1.5
CTNND1-238	ENST00000534647	KRTAP19-6	Q3LI70	58 aa		5.64	□□□□□ -1.51
CTNND1-238	ENST00000534647	RPS28	P62857	69 aa	Known RBP	5.63	□□□□□ -1.51
CTNND1-238	ENST00000534647	LUZP6	Q538Z0	58 aa		5.61	□□□□□ -1.51
CTNND1-238	ENST00000534647	SPINK7	P58062	85 aa		5.58	□□□□□ -1.52
CTNND1-238	ENST00000534647	ACYP2	P14621	99 aa		5.55	□□□□□ -1.52
CTNND1-238	ENST00000534647	MACF1	Q9UPN3	7388 aa	Known RBP	5.55	□□□□□ -1.52
CTNND1-238	ENST00000534647	DMAC1	Q96GE9	116 aa		5.54	□□□□□ -1.52
CTNND1-238	ENST00000534647	KRTAP6-3	Q3LI67	103 aa		5.53	□□□□□ -1.52
CTNND1-238	ENST00000534647	COA5	Q86WW8	74 aa		5.53	□□□□□ -1.52
CTNND1-238	ENST00000534647	SYNE2	Q8WXH0	6885 aa	Known RBP	5.52	□□□□□ -1.53
CTNND1-238	ENST00000534647		A8MUN3	132 aa		5.51	□□□□□ -1.53
CTNND1-238	ENST00000534647	CHKB-CPT1B	H3BT56	60 aa		5.51	□□□□□ -1.53
CTNND1-238	ENST00000534647	KRTAP4-12	Q9BQ66	201 aa		5.51	□□□□□ -1.53
CTNND1-238	ENST00000534647		K7ERS5	55 aa		5.45	□□□□□ -1.54
CTNND1-238	ENST00000534647	H1FX-AS1	Q4G0G2	97 aa		5.4	□□□□□ -1.54
CTNND1-238	ENST00000534647	SPTSSB	Q8NFR3	76 aa		5.4	□□□□□ -1.54
CTNND1-238	ENST00000534647		Q1T7F1	81 aa		5.37	□□□□□ -1.55
CTNND1-238	ENST00000534647	ADM2	Q7Z4H4	148 aa		5.37	□□□□□ -1.55
CTNND1-238	ENST00000534647	LOC100996750	A0A140TA64	210 aa		5.32	□□□□□ -1.56
CTNND1-238	ENST00000534647		A6NED7	52 aa		5.32	□□□□□ -1.56
CTNND1-238	ENST00000534647	KRTAP4-6	Q9BYQ5	205 aa		5.32	□□□□□ -1.56
CTNND1-238	ENST00000534647	LINC01558	Q9Y6Z2	57 aa		5.32	□□□□□ -1.56
CTNND1-238	ENST00000534647		S4R3F8	94 aa		5.31	□□□□□ -1.56
CTNND1-238	ENST00000534647	PRR15L	Q9BU68	103 aa		5.3	□□□□□ -1.56
CTNND1-238	ENST00000534647	KRTAP4-8	Q9BYQ9	185 aa		5.3	□□□□□ -1.56
CTNND1-238	ENST00000534647		A0A1B0GU69	56 aa		5.26	□□□□□ -1.57
CTNND1-238	ENST00000534647		A6NN06	94 aa		5.25	□□□□□ -1.57
CTNND1-238	ENST00000534647	LCA10	Q71F78	164 aa		5.25	□□□□□ -1.57
CTNND1-238	ENST00000534647	MT1B	P07438	61 aa		5.24	□□□□□ -1.57
CTNND1-238	ENST00000534647	KTN1-AS1	Q86SY8	53 aa		5.24	□□□□□ -1.57
CTNND1-238	ENST00000534647	LCE1A	Q5T7P2	110 aa		5.23	□□□□□ -1.57
CTNND1-238	ENST00000534647	KRTAP19-8	Q3LI54	63 aa		5.22	□□□□□ -1.57
CTNND1-238	ENST00000534647		Q5VV11	94 aa		5.21	□□□□□ -1.58
CTNND1-238	ENST00000534647	SPRR2G	Q9BYE4	73 aa		5.21	□□□□□ -1.58
CTNND1-238	ENST00000534647	NEB	P20929	6669 aa		5.21	□□□□□ -1.58
CTNND1-238	ENST00000534647	MT3	P25713	68 aa		5.2	□□□□□ -1.58
CTNND1-238	ENST00000534647	KRTAP20-1	Q3LI63	56 aa		5.2	□□□□□ -1.58
CTNND1-238	ENST00000534647	KRTAP5-9	P26371	169 aa		5.19	□□□□□ -1.58
CTNND1-238	ENST00000534647	CSAG1	Q6PB30	78 aa		5.19	□□□□□ -1.58
CTNND1-238	ENST00000534647	KRTAP10-5	P60370	271 aa		5.18	□□□□□ -1.58
CTNND1-238	ENST00000534647	LINC01554	Q52M75	96 aa		5.13	□□□□□ -1.59
CTNND1-238	ENST00000534647	BRK1	Q8WUW1	75 aa		5.11	□□□□□ -1.59
CTNND1-238	ENST00000534647	UQCR11	O14957	56 aa		5.1	□□□□□ -1.59
CTNND1-238	ENST00000534647	LCE3B	Q5TA77	95 aa		5.1	□□□□□ -1.59
CTNND1-238	ENST00000534647		A0A1B0GU33	70 aa		5.08	□□□□□ -1.6
CTNND1-238	ENST00000534647	MUC12	Q9UKN1	5478 aa		5.07	□□□□□ -1.6
CTNND1-238	ENST00000534647		H0YAA0	97 aa		5.05	□□□□□ -1.6
CTNND1-238	ENST00000534647	MIR22HG	Q0VDD5	57 aa		5.05	□□□□□ -1.6
CTNND1-238	ENST00000534647	CDC42SE1	Q9NRR8	79 aa		5.05	□□□□□ -1.6
CTNND1-238	ENST00000534647	KRTAP2-3	P0C7H8	128 aa		5.04	□□□□□ -1.6
CTNND1-238	ENST00000534647	KRTAP2-4	Q9BYR9	128 aa		5.04	□□□□□ -1.6
CTNND1-238	ENST00000534647	CRIPT	Q9P021	101 aa		5.04	□□□□□ -1.6
CTNND1-238	ENST00000534647	KMT2D	O14686	5537 aa		5.02	□□□□□ -1.61
CTNND1-238	ENST00000534647	SPATA8	Q6RVD6	105 aa		5.01	□□□□□ -1.61
CTNND1-238	ENST00000534647		P0C880	135 aa		4.98	□□□□□ -1.61
CTNND1-238	ENST00000534647	SPINT4	Q6UDR6	99 aa		4.96	□□□□□ -1.62
CTNND1-238	ENST00000534647	KRTAP25-1	Q3LHN0	102 aa		4.95	□□□□□ -1.62
CTNND1-238	ENST00000534647		A8MU10	97 aa		4.93	□□□□□ -1.62
CTNND1-238	ENST00000534647		M0QZ58	72 aa		4.92	□□□□□ -1.62
CTNND1-238	ENST00000534647	MDN1	Q9NU22	5596 aa		4.92	□□□□□ -1.62
CTNND1-238	ENST00000534647	SPRR2F	Q96RM1	72 aa		4.91	□□□□□ -1.62
CTNND1-238	ENST00000534647		R4GN34	69 aa		4.9	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms