RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 RBM12B-AS1Q9P1G2 102 aa7.3□□□□□ -1.24
TRIM3-212ENST00000533064 DMAC1Q96GE9 116 aa7.29□□□□□ -1.24
TRIM3-212ENST00000533064 MUC2Q02817 5179 aa7.29□□□□□ -1.24
TRIM3-212ENST00000533064 ACYP2P14621 99 aa7.26□□□□□ -1.25
TRIM3-212ENST00000533064 COA5Q86WW8 74 aa7.25□□□□□ -1.25
TRIM3-212ENST00000533064 A8MUN3 132 aa7.22□□□□□ -1.25
TRIM3-212ENST00000533064 COX6B2Q6YFQ2 88 aa7.22□□□□□ -1.25
TRIM3-212ENST00000533064 KTN1-AS1Q86SY8 53 aa7.21□□□□□ -1.26
TRIM3-212ENST00000533064 KRTAP3-1Q9BYR8 98 aa7.15□□□□□ -1.27
TRIM3-212ENST00000533064 CHKB-CPT1BH3BT56 60 aa7.13□□□□□ -1.27
TRIM3-212ENST00000533064 H1FX-AS1Q4G0G2 97 aa7.11□□□□□ -1.27
TRIM3-212ENST00000533064 KRTAP19-2Q3LHN2 52 aa7.1□□□□□ -1.27
TRIM3-212ENST00000533064 FLGP20930 4061 aaPredicted RBP7.07□□□□□ -1.28
TRIM3-212ENST00000533064 Q5VV11 94 aa7.06□□□□□ -1.28
TRIM3-212ENST00000533064 PSPHP1O15172 72 aa7.06□□□□□ -1.28
TRIM3-212ENST00000533064 FAT4Q6V0I7 4981 aa7.05□□□□□ -1.28
TRIM3-212ENST00000533064 LCE2CQ5TA81 110 aa7.05□□□□□ -1.28
TRIM3-212ENST00000533064 S4R3F8 94 aa7.02□□□□□ -1.29
TRIM3-212ENST00000533064 A6NN06 94 aa7.01□□□□□ -1.29
TRIM3-212ENST00000533064 SPTSSBQ8NFR3 76 aa7□□□□□ -1.29
TRIM3-212ENST00000533064 LINC01558Q9Y6Z2 57 aa6.98□□□□□ -1.29
TRIM3-212ENST00000533064 LCA10Q71F78 164 aa6.97□□□□□ -1.29
TRIM3-212ENST00000533064 CDC42SE1Q9NRR8 79 aa6.97□□□□□ -1.29
TRIM3-212ENST00000533064 M0R2T5 61 aa6.96□□□□□ -1.3
TRIM3-212ENST00000533064 MT1HP80294 61 aa6.96□□□□□ -1.3
TRIM3-212ENST00000533064 PRR15LQ9BU68 103 aa6.92□□□□□ -1.3
TRIM3-212ENST00000533064 CSAG1Q6PB30 78 aa6.9□□□□□ -1.31
TRIM3-212ENST00000533064 A6NED7 52 aa6.89□□□□□ -1.31
TRIM3-212ENST00000533064 A0A1B0GU69 56 aa6.85□□□□□ -1.31
TRIM3-212ENST00000533064 LCE2AQ5TA79 106 aaPredicted RBP6.85□□□□□ -1.31
TRIM3-212ENST00000533064 A8MU10 97 aa6.84□□□□□ -1.31
TRIM3-212ENST00000533064 KRTAP10-6P60371 365 aaPredicted RBP6.75□□□□□ -1.33
TRIM3-212ENST00000533064 LINC01554Q52M75 96 aa6.72□□□□□ -1.33
TRIM3-212ENST00000533064 LORP23490 312 aaPredicted RBP6.71□□□□□ -1.34
TRIM3-212ENST00000533064 H3BS24 57 aa6.7□□□□□ -1.34
TRIM3-212ENST00000533064 H0YAA0 97 aa6.68□□□□□ -1.34
TRIM3-212ENST00000533064 LCE2BO14633 110 aa6.67□□□□□ -1.34
TRIM3-212ENST00000533064 UQCR11O14957 56 aa6.67□□□□□ -1.34
TRIM3-212ENST00000533064 ADM2Q7Z4H4 148 aa6.65□□□□□ -1.34
TRIM3-212ENST00000533064 KRTAP9-8Q9BYQ0 159 aa6.65□□□□□ -1.34
TRIM3-212ENST00000533064 A0A1B0GU33 70 aa6.64□□□□□ -1.35
TRIM3-212ENST00000533064 MT2AP02795 61 aa6.62□□□□□ -1.35
TRIM3-212ENST00000533064 KRTAP10-10P60014 251 aa6.61□□□□□ -1.35
TRIM3-212ENST00000533064 P0C880 135 aa6.59□□□□□ -1.35
TRIM3-212ENST00000533064 MIR22HGQ0VDD5 57 aa6.58□□□□□ -1.36
TRIM3-212ENST00000533064 SPATA8Q6RVD6 105 aa6.58□□□□□ -1.36
TRIM3-212ENST00000533064 MT1FP04733 61 aa6.57□□□□□ -1.36
TRIM3-212ENST00000533064 PRAC1Q96KF2 57 aa6.52□□□□□ -1.37
TRIM3-212ENST00000533064 CRIPTQ9P021 101 aa6.52□□□□□ -1.37
TRIM3-212ENST00000533064 R4GN34 69 aa6.48□□□□□ -1.37
TRIM3-212ENST00000533064 KRTAP13-4Q3LI77 160 aa6.47□□□□□ -1.37
TRIM3-212ENST00000533064 M0QZ58 72 aa6.45□□□□□ -1.38
TRIM3-212ENST00000533064 KRTAP9-3Q9BYQ3 159 aa6.42□□□□□ -1.38
TRIM3-212ENST00000533064 KRTAP9-2Q9BYQ4 174 aa6.39□□□□□ -1.39
TRIM3-212ENST00000533064 SPRR2GQ9BYE4 73 aa6.39□□□□□ -1.39
TRIM3-212ENST00000533064 A0A0D9SG42 100 aa6.36□□□□□ -1.39
TRIM3-212ENST00000533064 KRTAP19-1Q8IUB9 90 aa6.36□□□□□ -1.39
TRIM3-212ENST00000533064 K7ERS5 55 aa6.3□□□□□ -1.4
TRIM3-212ENST00000533064 ROMO1P60602 79 aa6.26□□□□□ -1.41
TRIM3-212ENST00000533064 KRTAP9-6A0A140TA67 174 aa6.25□□□□□ -1.41
TRIM3-212ENST00000533064 KRTAP19-8Q3LI54 63 aa6.25□□□□□ -1.41
TRIM3-212ENST00000533064 KRTAP12-1P59990 96 aa6.23□□□□□ -1.41
TRIM3-212ENST00000533064 KRTAP25-1Q3LHN0 102 aa6.23□□□□□ -1.41
TRIM3-212ENST00000533064 KRTAP12-2P59991 146 aa6.22□□□□□ -1.41
TRIM3-212ENST00000533064 SPINT4Q6UDR6 99 aa6.2□□□□□ -1.42
TRIM3-212ENST00000533064 PLAC4Q8WY50 150 aa6.19□□□□□ -1.42
TRIM3-212ENST00000533064 MT1BP07438 61 aa6.16□□□□□ -1.42
TRIM3-212ENST00000533064 USH2AO75445 5202 aa6.16□□□□□ -1.42
TRIM3-212ENST00000533064 CAMK2N1Q7Z7J9 78 aa6.04□□□□□ -1.44
TRIM3-212ENST00000533064 FSIP2Q5CZC0 6907 aa6.03□□□□□ -1.44
TRIM3-212ENST00000533064 CRCT1Q9UGL9 99 aa6.01□□□□□ -1.45
TRIM3-212ENST00000533064 SSPOA2VEC9 5147 aa6.01□□□□□ -1.45
TRIM3-212ENST00000533064 KRTAP19-6Q3LI70 58 aa5.98□□□□□ -1.45
TRIM3-212ENST00000533064 LOC100996750A0A140TA64 210 aa5.98□□□□□ -1.45
TRIM3-212ENST00000533064 KRTAP4-6Q9BYQ5 205 aa5.98□□□□□ -1.45
TRIM3-212ENST00000533064 PRO2289Q9P1D8 64 aa5.98□□□□□ -1.45
TRIM3-212ENST00000533064 KRTAP10-5P60370 271 aa5.93□□□□□ -1.46
TRIM3-212ENST00000533064 MT1XP80297 61 aa5.91□□□□□ -1.46
TRIM3-212ENST00000533064 C10orf95Q9H7T3 257 aa5.89□□□□□ -1.47
TRIM3-212ENST00000533064 A0A0A0MQY5 61 aa5.8□□□□□ -1.48
TRIM3-212ENST00000533064 FCGBPQ9Y6R7 5405 aaPredicted RBP5.8□□□□□ -1.48
TRIM3-212ENST00000533064 KRTAP15-1Q3LI76 137 aa5.79□□□□□ -1.48
TRIM3-212ENST00000533064 NDUFAF8A1L188 74 aa5.73□□□□□ -1.49
TRIM3-212ENST00000533064 TNP1P09430 55 aa5.72□□□□□ -1.49
TRIM3-212ENST00000533064 KRTAP10-7P60409 375 aaPredicted RBP5.66□□□□□ -1.5
TRIM3-212ENST00000533064 KRTAP10-12P60413 245 aa5.63□□□□□ -1.51
TRIM3-212ENST00000533064 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.6□□□□□ -1.51
TRIM3-212ENST00000533064 KRTAP9-7A8MTY7 169 aa5.59□□□□□ -1.51
TRIM3-212ENST00000533064 PP632Q6XCG6 107 aa5.59□□□□□ -1.52
TRIM3-212ENST00000533064 KRTAP23-1A1A580 65 aa5.58□□□□□ -1.52
TRIM3-212ENST00000533064 LUZP6Q538Z0 58 aa5.55□□□□□ -1.52
TRIM3-212ENST00000533064 KMT2DO14686 5537 aa5.52□□□□□ -1.53
TRIM3-212ENST00000533064 MACF1Q9UPN3 7388 aaKnown RBP5.5□□□□□ -1.53
TRIM3-212ENST00000533064 KRTAP4-8A0A0G2JLE6 195 aa5.5□□□□□ -1.53
TRIM3-212ENST00000533064 KRTAP4-8Q9BYQ9 185 aa5.5□□□□□ -1.53
TRIM3-212ENST00000533064 KRTAP8-1Q8IUC2 63 aa5.47□□□□□ -1.53
TRIM3-212ENST00000533064 LCE3AQ5TA76 89 aa5.45□□□□□ -1.54
TRIM3-212ENST00000533064 SYNE2Q8WXH0 6885 aaKnown RBP5.34□□□□□ -1.55
TRIM3-212ENST00000533064 KRTAP6-3Q3LI67 103 aa5.34□□□□□ -1.56
TRIM3-212ENST00000533064 SPRR2FQ96RM1 72 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms