RNA–Protein interactions for RNA: ENST00000532540.5

TGFBR3-209, Transcript of transforming growth factor beta receptor 3, humanhuman

TSL 1 (best)

Gene TGFBR3, Length 3,913 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFBR3-209ENST00000532540 C10orf95Q9H7T3 257 aa3.75□□□□□ -1.81
TGFBR3-209ENST00000532540 VPS13DQ5THJ4 4388 aa3.74□□□□□ -1.81
TGFBR3-209ENST00000532540 HERC2O95714 4834 aa3.73□□□□□ -1.81
TGFBR3-209ENST00000532540 PKHD1P08F94 4074 aa3.73□□□□□ -1.81
TGFBR3-209ENST00000532540 KRTAP13-2Q52LG2 175 aa3.73□□□□□ -1.81
TGFBR3-209ENST00000532540 ABCA13Q86UQ4 5058 aa3.72□□□□□ -1.81
TGFBR3-209ENST00000532540 DYNC1H1Q14204 4646 aaKnown RBP3.7□□□□□ -1.82
TGFBR3-209ENST00000532540 LRP1BQ9NZR2 4599 aa3.69□□□□□ -1.82
TGFBR3-209ENST00000532540 HERC1Q15751 4861 aa3.69□□□□□ -1.82
TGFBR3-209ENST00000532540 KRTAP1-4P0C5Y4 121 aa3.67□□□□□ -1.82
TGFBR3-209ENST00000532540 DNAH2Q9P225 4427 aa3.67□□□□□ -1.82
TGFBR3-209ENST00000532540 DNAH6Q9C0G6 4158 aa3.65□□□□□ -1.82
TGFBR3-209ENST00000532540 TPRXLQ17RH7 258 aa3.65□□□□□ -1.82
TGFBR3-209ENST00000532540 S4R3F8 94 aa3.65□□□□□ -1.82
TGFBR3-209ENST00000532540 ALMS1Q8TCU4 4167 aa3.64□□□□□ -1.83
TGFBR3-209ENST00000532540 CAMK2N1Q7Z7J9 78 aa3.63□□□□□ -1.83
TGFBR3-209ENST00000532540 HECTD4Q9Y4D8 3996 aa3.63□□□□□ -1.83
TGFBR3-209ENST00000532540 PLAC4Q8WY50 150 aa3.62□□□□□ -1.83
TGFBR3-209ENST00000532540 KRTAP15-1Q3LI76 137 aa3.61□□□□□ -1.83
TGFBR3-209ENST00000532540 MYCBP2O75592 4640 aa3.61□□□□□ -1.83
TGFBR3-209ENST00000532540 APOBP04114 4563 aaKnown RBP3.61□□□□□ -1.83
TGFBR3-209ENST00000532540 DNAH17Q9UFH2 4485 aa3.61□□□□□ -1.83
TGFBR3-209ENST00000532540 DNAH8Q96JB1 4490 aa3.6□□□□□ -1.83
TGFBR3-209ENST00000532540 FAT3Q8TDW7 4589 aa3.6□□□□□ -1.83
TGFBR3-209ENST00000532540 VPS13BQ7Z7G8 4022 aa3.6□□□□□ -1.83
TGFBR3-209ENST00000532540 FAT2Q9NYQ8 4349 aa3.6□□□□□ -1.83
TGFBR3-209ENST00000532540 LRP1Q07954 4544 aaKnown RBP3.59□□□□□ -1.83
TGFBR3-209ENST00000532540 KRTAP3-3Q9BYR6 98 aa3.57□□□□□ -1.84
TGFBR3-209ENST00000532540 KRTAP3-2Q9BYR7 98 aa3.57□□□□□ -1.84
TGFBR3-209ENST00000532540 PKD1P98161 4303 aa3.57□□□□□ -1.84
TGFBR3-209ENST00000532540 HSPG2P98160 4391 aa3.57□□□□□ -1.84
TGFBR3-209ENST00000532540 R4GN34 69 aa3.55□□□□□ -1.84
TGFBR3-209ENST00000532540 M0QZ58 72 aa3.54□□□□□ -1.84
TGFBR3-209ENST00000532540 UBR4Q5T4S7 5183 aa3.54□□□□□ -1.84
TGFBR3-209ENST00000532540 KRTAP10-4P60372 401 aaPredicted RBP3.54□□□□□ -1.84
TGFBR3-209ENST00000532540 KRTAP10-8P60410 259 aa3.54□□□□□ -1.84
TGFBR3-209ENST00000532540 M0R2T5 61 aa3.53□□□□□ -1.84
TGFBR3-209ENST00000532540 MT1HL1P0DM35 61 aa3.51□□□□□ -1.85
TGFBR3-209ENST00000532540 RPS29P62273 56 aaKnown RBP3.5□□□□□ -1.85
TGFBR3-209ENST00000532540 RNF213Q63HN8 5207 aa3.46□□□□□ -1.86
TGFBR3-209ENST00000532540 KRTAP12-2P59991 146 aa3.45□□□□□ -1.86
TGFBR3-209ENST00000532540 XP32Q5T750 250 aa3.45□□□□□ -1.86
TGFBR3-209ENST00000532540 PP632Q6XCG6 107 aa3.45□□□□□ -1.86
TGFBR3-209ENST00000532540 KRTAP3-1Q9BYR8 98 aa3.45□□□□□ -1.86
TGFBR3-209ENST00000532540 LRP2P98164 4655 aa3.43□□□□□ -1.86
TGFBR3-209ENST00000532540 KRTAP13-4Q3LI77 160 aa3.43□□□□□ -1.86
TGFBR3-209ENST00000532540 KRTAP12-1P59990 96 aa3.41□□□□□ -1.86
TGFBR3-209ENST00000532540 KRTAP10-6P60371 365 aaPredicted RBP3.41□□□□□ -1.86
TGFBR3-209ENST00000532540 HMCN2Q8NDA2 5059 aa3.34□□□□□ -1.87
TGFBR3-209ENST00000532540 LPAP08519 4548 aa3.32□□□□□ -1.88
TGFBR3-209ENST00000532540 TNP1P09430 55 aa3.31□□□□□ -1.88
TGFBR3-209ENST00000532540 PRO2289Q9P1D8 64 aa3.29□□□□□ -1.88
TGFBR3-209ENST00000532540 MUC2Q02817 5179 aa3.28□□□□□ -1.88
TGFBR3-209ENST00000532540 FSIP2Q5CZC0 6907 aa3.24□□□□□ -1.89
TGFBR3-209ENST00000532540 INE1O15225 51 aa3.22□□□□□ -1.89
TGFBR3-209ENST00000532540 KRTAP4-1Q9BYQ7 146 aa3.21□□□□□ -1.9
TGFBR3-209ENST00000532540 PKHD1L1Q86WI1 4243 aa3.2□□□□□ -1.9
TGFBR3-209ENST00000532540 KRTAP10-10P60014 251 aa3.18□□□□□ -1.9
TGFBR3-209ENST00000532540 FAT4Q6V0I7 4981 aa3.17□□□□□ -1.9
TGFBR3-209ENST00000532540 LCE2BO14633 110 aa3.16□□□□□ -1.9
TGFBR3-209ENST00000532540 TNXBP22105 4242 aa3.13□□□□□ -1.91
TGFBR3-209ENST00000532540 LCE2AQ5TA79 106 aaPredicted RBP3.12□□□□□ -1.91
TGFBR3-209ENST00000532540 KRTAP9-2Q9BYQ4 174 aa3.06□□□□□ -1.92
TGFBR3-209ENST00000532540 MT1HP80294 61 aa3□□□□□ -1.93
TGFBR3-209ENST00000532540 KRTAP23-1A1A580 65 aa2.99□□□□□ -1.93
TGFBR3-209ENST00000532540 LCE2CQ5TA81 110 aa2.99□□□□□ -1.93
TGFBR3-209ENST00000532540 KRTAP9-6A0A140TA67 174 aa2.98□□□□□ -1.93
TGFBR3-209ENST00000532540 LORP23490 312 aaPredicted RBP2.97□□□□□ -1.93
TGFBR3-209ENST00000532540 MT2AP02795 61 aa2.88□□□□□ -1.95
TGFBR3-209ENST00000532540 MT1FP04733 61 aa2.88□□□□□ -1.95
TGFBR3-209ENST00000532540 SPRR5A0A1B0GTR4 108 aa2.86□□□□□ -1.95
TGFBR3-209ENST00000532540 CRCT1Q9UGL9 99 aa2.86□□□□□ -1.95
TGFBR3-209ENST00000532540 USH2AO75445 5202 aa2.86□□□□□ -1.95
TGFBR3-209ENST00000532540 KRTAP19-2Q3LHN2 52 aa2.86□□□□□ -1.95
TGFBR3-209ENST00000532540 MUC17Q685J3 4493 aa2.86□□□□□ -1.95
TGFBR3-209ENST00000532540 LCE3AQ5TA76 89 aa2.8□□□□□ -1.96
TGFBR3-209ENST00000532540 KRTAP9-8Q9BYQ0 159 aa2.79□□□□□ -1.96
TGFBR3-209ENST00000532540 FLGP20930 4061 aaPredicted RBP2.77□□□□□ -1.97
TGFBR3-209ENST00000532540 KRTAP12-3P60328 96 aa2.76□□□□□ -1.97
TGFBR3-209ENST00000532540 SYNE2Q8WXH0 6885 aaKnown RBP2.73□□□□□ -1.97
TGFBR3-209ENST00000532540 SSPOA2VEC9 5147 aa2.71□□□□□ -1.98
TGFBR3-209ENST00000532540 KRTAP19-1Q8IUB9 90 aa2.71□□□□□ -1.98
TGFBR3-209ENST00000532540 KRTAP10-12P60413 245 aa2.7□□□□□ -1.98
TGFBR3-209ENST00000532540 KRTAP9-7A8MTY7 169 aa2.69□□□□□ -1.98
TGFBR3-209ENST00000532540 MACF1Q9UPN3 7388 aaKnown RBP2.69□□□□□ -1.98
TGFBR3-209ENST00000532540 KRTAP9-3Q9BYQ3 159 aa2.68□□□□□ -1.98
TGFBR3-209ENST00000532540 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.65□□□□□ -1.98
TGFBR3-209ENST00000532540 SPRR2GQ9BYE4 73 aa2.65□□□□□ -1.98
TGFBR3-209ENST00000532540 FCGBPQ9Y6R7 5405 aaPredicted RBP2.65□□□□□ -1.98
TGFBR3-209ENST00000532540 KRTAP8-1Q8IUC2 63 aa2.64□□□□□ -1.99
TGFBR3-209ENST00000532540 MT1BP07438 61 aa2.62□□□□□ -1.99
TGFBR3-209ENST00000532540 KMT2DO14686 5537 aa2.59□□□□□ -2
TGFBR3-209ENST00000532540 KRTAP4-8A0A0G2JLE6 195 aa2.57□□□□□ -2
TGFBR3-209ENST00000532540 KRTAP4-8Q9BYQ9 185 aa2.57□□□□□ -2
TGFBR3-209ENST00000532540 LOC100996750A0A140TA64 210 aa2.56□□□□□ -2
TGFBR3-209ENST00000532540 KRTAP4-6Q9BYQ5 205 aa2.56□□□□□ -2
TGFBR3-209ENST00000532540 KRTAP10-7P60409 375 aaPredicted RBP2.55□□□□□ -2
TGFBR3-209ENST00000532540 KRTAP19-8Q3LI54 63 aa2.55□□□□□ -2
TGFBR3-209ENST00000532540 SPRR2FQ96RM1 72 aa2.54□□□□□ -2
TGFBR3-209ENST00000532540 MT1XP80297 61 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms