RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 MT-ATP8P03928 68 aa5.12□□□□□ -1.59
VPS28-214ENST00000531032 SPRR2GQ9BYE4 73 aa5.12□□□□□ -1.59
VPS28-214ENST00000531032 KRTAP3-1Q9BYR8 98 aa5.12□□□□□ -1.59
VPS28-214ENST00000531032 KRTAP19-8Q3LI54 63 aa5.11□□□□□ -1.59
VPS28-214ENST00000531032 Q5VV11 94 aa5.11□□□□□ -1.59
VPS28-214ENST00000531032 CSAG1Q6PB30 78 aa5.11□□□□□ -1.59
VPS28-214ENST00000531032 LOC101927531A0A1B0GV80 90 aa5.1□□□□□ -1.59
VPS28-214ENST00000531032 CYP4F30PQ9H0H9 118 aa5.09□□□□□ -1.59
VPS28-214ENST00000531032 LCA10Q71F78 164 aa5.08□□□□□ -1.6
VPS28-214ENST00000531032 MUC12Q9UKN1 5478 aa5.07□□□□□ -1.6
VPS28-214ENST00000531032 UQCRQO14949 82 aa5.07□□□□□ -1.6
VPS28-214ENST00000531032 KRTAP10-5P60370 271 aa5.07□□□□□ -1.6
VPS28-214ENST00000531032 H0Y9P7 68 aa5.06□□□□□ -1.6
VPS28-214ENST00000531032 ATOX1O00244 68 aa5.06□□□□□ -1.6
VPS28-214ENST00000531032 OCR1Q9BZK8 76 aa5.04□□□□□ -1.6
VPS28-214ENST00000531032 KLKP1Q107X0 134 aa5.03□□□□□ -1.6
VPS28-214ENST00000531032 IMUPQ9GZP8 106 aa5.03□□□□□ -1.6
VPS28-214ENST00000531032 KRTAP5-9P26371 169 aa5.02□□□□□ -1.61
VPS28-214ENST00000531032 KRTAP20-1Q3LI63 56 aa4.99□□□□□ -1.61
VPS28-214ENST00000531032 KRTAP3-3Q9BYR6 98 aa4.99□□□□□ -1.61
VPS28-214ENST00000531032 MP68P56378 58 aa4.98□□□□□ -1.61
VPS28-214ENST00000531032 LINC00208Q96KT6 92 aa4.97□□□□□ -1.61
VPS28-214ENST00000531032 NDUFC1O43677 76 aa4.96□□□□□ -1.62
VPS28-214ENST00000531032 KMT2DO14686 5537 aa4.95□□□□□ -1.62
VPS28-214ENST00000531032 CRIPTQ9P021 101 aa4.95□□□□□ -1.62
VPS28-214ENST00000531032 A8MUN3 132 aa4.94□□□□□ -1.62
VPS28-214ENST00000531032 MDN1Q9NU22 5596 aa4.92□□□□□ -1.62
VPS28-214ENST00000531032 TRAV7A0A075B6U4 112 aa4.9□□□□□ -1.63
VPS28-214ENST00000531032 H3BPC8 53 aa4.87□□□□□ -1.63
VPS28-214ENST00000531032 H0YAA0 97 aa4.86□□□□□ -1.63
VPS28-214ENST00000531032 SMIM20Q8N5G0 67 aa4.86□□□□□ -1.63
VPS28-214ENST00000531032 ADM2Q7Z4H4 148 aa4.85□□□□□ -1.63
VPS28-214ENST00000531032 KRTAP2-3P0C7H8 128 aa4.82□□□□□ -1.64
VPS28-214ENST00000531032 SERP2Q8N6R1 65 aa4.82□□□□□ -1.64
VPS28-214ENST00000531032 KRTAP2-4Q9BYR9 128 aa4.82□□□□□ -1.64
VPS28-214ENST00000531032 SPRR2FQ96RM1 72 aa4.8□□□□□ -1.64
VPS28-214ENST00000531032 SNURFQ9Y675 71 aa4.8□□□□□ -1.64
VPS28-214ENST00000531032 DMAC1Q96GE9 116 aa4.79□□□□□ -1.64
VPS28-214ENST00000531032 PRO2289Q9P1D8 64 aa4.79□□□□□ -1.64
VPS28-214ENST00000531032 MT1XP80297 61 aa4.78□□□□□ -1.64
VPS28-214ENST00000531032 C20orf197Q8N268 126 aa4.78□□□□□ -1.64
VPS28-214ENST00000531032 SPRR2EP22531 72 aa4.77□□□□□ -1.65
VPS28-214ENST00000531032 SPRR2BP35325 72 aa4.77□□□□□ -1.65
VPS28-214ENST00000531032 SPRR2AP35326 72 aa4.77□□□□□ -1.65
VPS28-214ENST00000531032 COX7CP15954 63 aa4.75□□□□□ -1.65
VPS28-214ENST00000531032 ANAPC13Q9BS18 74 aa4.75□□□□□ -1.65
VPS28-214ENST00000531032 R4GN34 69 aa4.75□□□□□ -1.65
VPS28-214ENST00000531032 KRTAP8-1Q8IUC2 63 aa4.72□□□□□ -1.65
VPS28-214ENST00000531032 CYSTM1Q9H1C7 97 aa4.72□□□□□ -1.65
VPS28-214ENST00000531032 M0QZ58 72 aa4.71□□□□□ -1.66
VPS28-214ENST00000531032 KRTAP12-2P59991 146 aa4.71□□□□□ -1.66
VPS28-214ENST00000531032 PLAC4Q8WY50 150 aa4.71□□□□□ -1.66
VPS28-214ENST00000531032 P0C880 135 aa4.7□□□□□ -1.66
VPS28-214ENST00000531032 ACYP2P14621 99 aa4.7□□□□□ -1.66
VPS28-214ENST00000531032 RPS28P62857 69 aaKnown RBP4.7□□□□□ -1.66
VPS28-214ENST00000531032 LCE1AQ5T7P2 110 aa4.7□□□□□ -1.66
VPS28-214ENST00000531032 SPTSSBQ8NFR3 76 aa4.69□□□□□ -1.66
VPS28-214ENST00000531032 CHKB-CPT1BH3BT56 60 aa4.68□□□□□ -1.66
VPS28-214ENST00000531032 LINC01554Q52M75 96 aa4.66□□□□□ -1.66
VPS28-214ENST00000531032 SPANXA2-OT1Q8N9U9 137 aa4.66□□□□□ -1.66
VPS28-214ENST00000531032 KRTAP2-2Q9BYT5 123 aa4.66□□□□□ -1.66
VPS28-214ENST00000531032 KRTAP2-1Q9BYU5 128 aa4.66□□□□□ -1.66
VPS28-214ENST00000531032 CCDC179H3BU77 68 aa4.65□□□□□ -1.67
VPS28-214ENST00000531032 H7BZZ5 65 aa4.64□□□□□ -1.67
VPS28-214ENST00000531032 KRTAP4-8A0A0G2JLE6 195 aa4.62□□□□□ -1.67
VPS28-214ENST00000531032 KRTAP4-8Q9BYQ9 185 aa4.62□□□□□ -1.67
VPS28-214ENST00000531032 KRTAP3-2Q9BYR7 98 aa4.62□□□□□ -1.67
VPS28-214ENST00000531032 SPRR2DP22532 72 aa4.61□□□□□ -1.67
VPS28-214ENST00000531032 KRTAP10-7P60409 375 aaPredicted RBP4.55□□□□□ -1.68
VPS28-214ENST00000531032 KRTAP10-12P60413 245 aa4.55□□□□□ -1.68
VPS28-214ENST00000531032 COA5Q86WW8 74 aa4.54□□□□□ -1.68
VPS28-214ENST00000531032 LCE3BQ5TA77 95 aa4.51□□□□□ -1.69
VPS28-214ENST00000531032 TMEM258P61165 79 aa4.5□□□□□ -1.69
VPS28-214ENST00000531032 PRO0628Q9UI54 55 aa4.45□□□□□ -1.7
VPS28-214ENST00000531032 SEC61GP60059 68 aa4.43□□□□□ -1.7
VPS28-214ENST00000531032 ATP5EP56381 51 aaPredicted RBP4.41□□□□□ -1.7
VPS28-214ENST00000531032 SERP1Q9Y6X1 66 aa4.41□□□□□ -1.7
VPS28-214ENST00000531032 CAMK2N1Q7Z7J9 78 aa4.4□□□□□ -1.71
VPS28-214ENST00000531032 KRTAP13-4Q3LI77 160 aa4.38□□□□□ -1.71
VPS28-214ENST00000531032 SMIM26A0A096LP01 95 aa4.36□□□□□ -1.71
VPS28-214ENST00000531032 A0A0D9SG42 100 aa4.33□□□□□ -1.72
VPS28-214ENST00000531032 V9GYY9 64 aa4.32□□□□□ -1.72
VPS28-214ENST00000531032 DSTQ03001 7570 aaKnown RBP4.31□□□□□ -1.72
VPS28-214ENST00000531032 GPR98Q8WXG9 6306 aa4.3□□□□□ -1.72
VPS28-214ENST00000531032 LCE5AQ5TCM9 118 aa4.3□□□□□ -1.72
VPS28-214ENST00000531032 A0A1B0GU33 70 aa4.29□□□□□ -1.72
VPS28-214ENST00000531032 KRTAP19-7Q3SYF9 63 aa4.28□□□□□ -1.72
VPS28-214ENST00000531032 SPATA8Q6RVD6 105 aa4.28□□□□□ -1.72
VPS28-214ENST00000531032 SPINT4Q6UDR6 99 aa4.28□□□□□ -1.72
VPS28-214ENST00000531032 A0A1B0GU69 56 aa4.26□□□□□ -1.73
VPS28-214ENST00000531032 LINC01558Q9Y6Z2 57 aa4.26□□□□□ -1.73
VPS28-214ENST00000531032 MT1EP04732 61 aa4.25□□□□□ -1.73
VPS28-214ENST00000531032 KRTAP19-3Q7Z4W3 81 aa4.25□□□□□ -1.73
VPS28-214ENST00000531032 KRTAP4-9Q9BYQ8 210 aa4.23□□□□□ -1.73
VPS28-214ENST00000531032 PMAIP1Q13794 54 aa4.2□□□□□ -1.74
VPS28-214ENST00000531032 KRTAP12-1P59990 96 aa4.17□□□□□ -1.74
VPS28-214ENST00000531032 A8MU10 97 aa4.16□□□□□ -1.74
VPS28-214ENST00000531032 BRK1Q8WUW1 75 aa4.16□□□□□ -1.74
VPS28-214ENST00000531032 PRR15LQ9BU68 103 aa4.16□□□□□ -1.74
VPS28-214ENST00000531032 Q1T7F1 81 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms