RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 MT-ATP8P03928 68 aa9.53□□□□□ -0.88
VPS28-203ENST00000524521 KRTAP3-3Q9BYR6 98 aa9.53□□□□□ -0.88
VPS28-203ENST00000524521 SCGB1A1P11684 91 aa9.51□□□□□ -0.89
VPS28-203ENST00000524521 LINC00208Q96KT6 92 aa9.45□□□□□ -0.9
VPS28-203ENST00000524521 OCR1Q9BZK8 76 aa9.45□□□□□ -0.9
VPS28-203ENST00000524521 KLKP1Q107X0 134 aa9.42□□□□□ -0.9
VPS28-203ENST00000524521 MP68P56378 58 aa9.41□□□□□ -0.9
VPS28-203ENST00000524521 SPRR2GQ9BYE4 73 aa9.4□□□□□ -0.9
VPS28-203ENST00000524521 NDUFC1O43677 76 aa9.38□□□□□ -0.91
VPS28-203ENST00000524521 Q5VV11 94 aa9.36□□□□□ -0.91
VPS28-203ENST00000524521 A8MUN3 132 aa9.34□□□□□ -0.91
VPS28-203ENST00000524521 MT1BP07438 61 aa9.34□□□□□ -0.91
VPS28-203ENST00000524521 SMIM20Q8N5G0 67 aa9.34□□□□□ -0.91
VPS28-203ENST00000524521 KRTAP19-8Q3LI54 63 aa9.33□□□□□ -0.92
VPS28-203ENST00000524521 H3BPC8 53 aa9.31□□□□□ -0.92
VPS28-203ENST00000524521 MACF1Q9UPN3 7388 aaKnown RBP9.29□□□□□ -0.92
VPS28-203ENST00000524521 CRIPTQ9P021 101 aa9.28□□□□□ -0.92
VPS28-203ENST00000524521 TRAV7A0A075B6U4 112 aa9.27□□□□□ -0.93
VPS28-203ENST00000524521 A6NN06 94 aa9.25□□□□□ -0.93
VPS28-203ENST00000524521 H0YAA0 97 aa9.24□□□□□ -0.93
VPS28-203ENST00000524521 ADM2Q7Z4H4 148 aa9.18□□□□□ -0.94
VPS28-203ENST00000524521 SYNE2Q8WXH0 6885 aaKnown RBP9.17□□□□□ -0.94
VPS28-203ENST00000524521 KRTAP10-5P60370 271 aa9.12□□□□□ -0.95
VPS28-203ENST00000524521 KRTAP6-3Q3LI67 103 aa9.12□□□□□ -0.95
VPS28-203ENST00000524521 SERP2Q8N6R1 65 aa9.12□□□□□ -0.95
VPS28-203ENST00000524521 DMAC1Q96GE9 116 aa9.1□□□□□ -0.95
VPS28-203ENST00000524521 SNURFQ9Y675 71 aa9.03□□□□□ -0.96
VPS28-203ENST00000524521 C20orf197Q8N268 126 aa9.02□□□□□ -0.97
VPS28-203ENST00000524521 P0C880 135 aa8.97□□□□□ -0.97
VPS28-203ENST00000524521 R4GN34 69 aa8.95□□□□□ -0.98
VPS28-203ENST00000524521 COX7CP15954 63 aa8.94□□□□□ -0.98
VPS28-203ENST00000524521 ACYP2P14621 99 aa8.93□□□□□ -0.98
VPS28-203ENST00000524521 ANAPC13Q9BS18 74 aa8.89□□□□□ -0.99
VPS28-203ENST00000524521 M0QZ58 72 aa8.88□□□□□ -0.99
VPS28-203ENST00000524521 PLAC4Q8WY50 150 aa8.88□□□□□ -0.99
VPS28-203ENST00000524521 KRTAP3-2Q9BYR7 98 aa8.88□□□□□ -0.99
VPS28-203ENST00000524521 SPANXA2-OT1Q8N9U9 137 aa8.85□□□□□ -0.99
VPS28-203ENST00000524521 PRO2289Q9P1D8 64 aa8.82□□□□□ -1
VPS28-203ENST00000524521 SPTSSBQ8NFR3 76 aa8.81□□□□□ -1
VPS28-203ENST00000524521 CHKB-CPT1BH3BT56 60 aa8.77□□□□□ -1.01
VPS28-203ENST00000524521 MT1XP80297 61 aa8.77□□□□□ -1.01
VPS28-203ENST00000524521 LINC01554Q52M75 96 aa8.77□□□□□ -1.01
VPS28-203ENST00000524521 KRTAP5-9P26371 169 aa8.7□□□□□ -1.02
VPS28-203ENST00000524521 H7BZZ5 65 aa8.68□□□□□ -1.02
VPS28-203ENST00000524521 CYSTM1Q9H1C7 97 aa8.67□□□□□ -1.02
VPS28-203ENST00000524521 CCDC179H3BU77 68 aa8.65□□□□□ -1.02
VPS28-203ENST00000524521 MUC12Q9UKN1 5478 aa8.6□□□□□ -1.03
VPS28-203ENST00000524521 NEBP20929 6669 aa8.58□□□□□ -1.04
VPS28-203ENST00000524521 COA5Q86WW8 74 aa8.58□□□□□ -1.04
VPS28-203ENST00000524521 KRTAP12-2P59991 146 aa8.53□□□□□ -1.04
VPS28-203ENST00000524521 KMT2DO14686 5537 aa8.52□□□□□ -1.05
VPS28-203ENST00000524521 KRTAP8-1Q8IUC2 63 aa8.5□□□□□ -1.05
VPS28-203ENST00000524521 SPRR2FQ96RM1 72 aa8.5□□□□□ -1.05
VPS28-203ENST00000524521 ATP5EP56381 51 aaPredicted RBP8.47□□□□□ -1.05
VPS28-203ENST00000524521 KRTAP20-1Q3LI63 56 aa8.43□□□□□ -1.06
VPS28-203ENST00000524521 KRTAP4-8A0A0G2JLE6 195 aa8.4□□□□□ -1.06
VPS28-203ENST00000524521 KRTAP4-8Q9BYQ9 185 aa8.4□□□□□ -1.06
VPS28-203ENST00000524521 KRTAP10-7P60409 375 aaPredicted RBP8.39□□□□□ -1.07
VPS28-203ENST00000524521 TMEM258P61165 79 aa8.39□□□□□ -1.07
VPS28-203ENST00000524521 KRTAP13-4Q3LI77 160 aa8.39□□□□□ -1.07
VPS28-203ENST00000524521 MDN1Q9NU22 5596 aa8.38□□□□□ -1.07
VPS28-203ENST00000524521 SPRR2EP22531 72 aa8.37□□□□□ -1.07
VPS28-203ENST00000524521 SPRR2BP35325 72 aa8.37□□□□□ -1.07
VPS28-203ENST00000524521 SPRR2AP35326 72 aa8.37□□□□□ -1.07
VPS28-203ENST00000524521 SEC61GP60059 68 aa8.35□□□□□ -1.07
VPS28-203ENST00000524521 KRTAP10-12P60413 245 aa8.32□□□□□ -1.08
VPS28-203ENST00000524521 SERP1Q9Y6X1 66 aa8.31□□□□□ -1.08
VPS28-203ENST00000524521 CAMK2N1Q7Z7J9 78 aa8.25□□□□□ -1.09
VPS28-203ENST00000524521 KRTAP2-3P0C7H8 128 aa8.24□□□□□ -1.09
VPS28-203ENST00000524521 LCE1AQ5T7P2 110 aa8.24□□□□□ -1.09
VPS28-203ENST00000524521 KRTAP2-4Q9BYR9 128 aa8.24□□□□□ -1.09
VPS28-203ENST00000524521 A0A0D9SG42 100 aa8.19□□□□□ -1.1
VPS28-203ENST00000524521 A0A1B0GU69 56 aa8.17□□□□□ -1.1
VPS28-203ENST00000524521 A0A1B0GU33 70 aa8.16□□□□□ -1.1
VPS28-203ENST00000524521 SPATA8Q6RVD6 105 aa8.16□□□□□ -1.1
VPS28-203ENST00000524521 PCP4P48539 62 aa8.13□□□□□ -1.11
VPS28-203ENST00000524521 PRR15LQ9BU68 103 aa8.09□□□□□ -1.11
VPS28-203ENST00000524521 SPRR2DP22532 72 aa8.08□□□□□ -1.12
VPS28-203ENST00000524521 SPINT4Q6UDR6 99 aa8.07□□□□□ -1.12
VPS28-203ENST00000524521 LINC01558Q9Y6Z2 57 aa8.04□□□□□ -1.12
VPS28-203ENST00000524521 KRTAP12-1P59990 96 aa7.98□□□□□ -1.13
VPS28-203ENST00000524521 KRTAP2-2Q9BYT5 123 aa7.98□□□□□ -1.13
VPS28-203ENST00000524521 KRTAP2-1Q9BYU5 128 aa7.98□□□□□ -1.13
VPS28-203ENST00000524521 SMIM26A0A096LP01 95 aa7.92□□□□□ -1.14
VPS28-203ENST00000524521 V9GYY9 64 aa7.89□□□□□ -1.15
VPS28-203ENST00000524521 A8MU10 97 aa7.86□□□□□ -1.15
VPS28-203ENST00000524521 LCE3BQ5TA77 95 aa7.86□□□□□ -1.15
VPS28-203ENST00000524521 KRTAP19-7Q3SYF9 63 aa7.84□□□□□ -1.15
VPS28-203ENST00000524521 UQCR11O14957 56 aa7.8□□□□□ -1.16
VPS28-203ENST00000524521 Q1T7F1 81 aa7.8□□□□□ -1.16
VPS28-203ENST00000524521 RPS28P62857 69 aaKnown RBP7.78□□□□□ -1.16
VPS28-203ENST00000524521 MT1EP04732 61 aa7.77□□□□□ -1.17
VPS28-203ENST00000524521 PSPHP1O15172 72 aa7.74□□□□□ -1.17
VPS28-203ENST00000524521 LCE5AQ5TCM9 118 aa7.7□□□□□ -1.18
VPS28-203ENST00000524521 KRTAP19-3Q7Z4W3 81 aa7.7□□□□□ -1.18
VPS28-203ENST00000524521 KRTAP19-5Q3LI72 72 aa7.68□□□□□ -1.18
VPS28-203ENST00000524521 MIR22HGQ0VDD5 57 aa7.65□□□□□ -1.18
VPS28-203ENST00000524521 C10orf95Q9H7T3 257 aa7.64□□□□□ -1.19
VPS28-203ENST00000524521 TNP1P09430 55 aa7.6□□□□□ -1.19
VPS28-203ENST00000524521 LCE3AQ5TA76 89 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms